Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.8e-256 888.6 427 100.0
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 6.2e-180 634.4 418 73.4
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.3e-173 612.1 418 69.6
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 7.4e-173 610.9 418 68.9
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 9.4e-168 594.0 420 65.0
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.2e-167 593.6 418 67.7
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 2.1e-167 592.8 418 67.2
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 3.6e-167 592.0 418 66.5
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.4e-166 590.1 418 68.7
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 2.3e-166 589.3 420 65.7
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 8.8e-166 587.4 418 66.7
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.9e-165 586.3 418 68.7
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 2.2e-164 582.8 418 67.0
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.4e-163 580.1 418 66.7
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 9.1e-163 577.4 420 64.5
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.2e-162 577.0 418 66.0
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 2.0e-162 576.2 418 65.1
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 4.5e-162 575.1 432 62.7
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 1.0e-161 573.9 418 65.8
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.7e-161 573.2 420 65.7
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 5.0e-161 571.6 418 67.0
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 8.5e-161 570.9 418 64.8
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 4.2e-160 568.5 418 64.8
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 4.2e-160 568.5 417 64.5
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 7.2e-160 567.8 417 64.0
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.2e-159 567.0 417 64.3
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 8.8e-158 560.8 416 65.6
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 1.1e-157 560.5 420 63.8
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.5e-157 560.1 420 63.6
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 2.0e-157 559.7 420 63.8
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 7.4e-157 557.8 422 64.5
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 2.8e-156 555.8 416 64.4
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 6.3e-156 554.7 451 60.5
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 6.3e-156 554.7 416 64.9
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 8.2e-156 554.3 420 64.5
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.4e-155 553.5 418 63.6
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.8e-155 553.1 418 64.1
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 9.1e-155 550.8 420 62.4
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 3.4e-154 548.9 422 62.6
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 7.7e-154 547.7 418 62.4
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.0e-153 547.4 417 64.3
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 1.0e-153 547.4 419 62.5
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 2.9e-153 545.8 417 61.2
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 3.8e-153 545.4 419 63.5
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.0e-153 545.0 419 62.5
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 8.5e-153 544.3 417 64.3
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.4e-152 543.5 418 63.6
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 4.2e-152 542.0 419 62.3
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.4e-152 540.8 419 62.1
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 3.6e-151 538.9 417 61.6
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 3.6e-151 538.9 417 62.1
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.8e-150 536.6 417 61.6
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.8e-150 536.6 419 61.8
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.9e-150 535.4 418 62.2
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 5.2e-150 535.0 422 60.9
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 8.8e-150 534.3 417 60.2
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 8.8e-150 534.3 417 61.9
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 8.8e-150 534.3 417 60.9
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 2.0e-149 533.1 417 61.4
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 2.6e-149 532.7 420 61.0
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 4.4e-149 531.9 419 60.9
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.7e-148 530.0 418 60.8
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 3.7e-148 528.9 420 60.2
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 8.2e-148 527.7 420 61.0
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 1.2e-146 523.9 418 58.6
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.6e-146 523.5 419 59.9
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.6e-146 523.5 417 59.5
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 3.5e-146 522.3 416 60.6
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.2e-145 519.6 382 67.0
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.9e-145 519.2 418 60.5
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.1e-144 517.3 245 100.0
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 5.5e-144 515.0 382 63.6
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 9.4e-144 514.2 417 59.7
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 6.1e-143 511.5 415 59.8
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 5.2e-142 508.4 339 72.3
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 6.7e-142 508.1 417 59.7
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 1.3e-140 503.8 417 57.3
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 1.3e-140 503.8 401 61.3
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.7e-140 503.4 401 61.8
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 8.2e-140 501.1 432 57.2
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.1e-139 500.7 387 62.5
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 2.4e-139 499.6 417 57.6
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 2.4e-139 499.6 417 57.6
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 2.4e-139 499.6 401 61.1
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.3e-139 498.4 332 71.7
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 7.0e-139 498.0 341 67.2
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 2.7e-138 496.1 415 58.6
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 3.5e-138 495.7 414 60.1
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.3e-137 493.8 419 57.8
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.3e-137 493.8 419 57.8
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 8.5e-137 491.1 418 59.1
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.5e-136 490.3 415 58.1
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 4.2e-136 488.8 418 60.8
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 3.6e-135 485.7 412 61.4
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.4e-134 483.8 381 60.6
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 3.5e-130 469.2 419 55.1
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 5.0e-129 465.3 390 58.5
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 8.0e-127 458.0 415 55.7
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 4.0e-126 455.7 416 56.5
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.3e-124 450.7 418 52.4
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 2.8e-119 433.0 419 52.7
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 5.2e-118 428.7 418 52.9
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.2e-117 427.6 418 53.1
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.2e-117 427.6 418 53.1
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.2e-117 427.6 418 53.1
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.0e-117 426.8 419 52.5
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.2e-115 419.5 298 65.4
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 4.6e-114 415.6 425 50.4
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 3.3e-112 409.5 418 53.1
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 8.0e-111 404.8 436 48.6
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.0e-110 402.5 445 47.4
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.9e-107 393.7 420 50.2
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 7.0e-107 391.7 421 48.5
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.9e-104 383.6 308 61.4
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 8.3e-100 368.2 308 60.7
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 2.3e-89 333.6 420 46.0
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.8e-86 323.9 421 41.1
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 1.2e-85 321.2 382 46.9
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 8.4e-84 315.1 153 99.3
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 8.4e-84 315.1 410 42.0
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 6.6e-81 305.4 205 70.2
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 8.7e-81 305.1 418 40.7
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.3e-79 301.2 408 40.4
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.1e-78 298.1 343 47.2
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 6.9e-78 295.4 420 41.2
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.6e-77 293.5 419 41.5
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 6.4e-76 288.9 254 57.9
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 3.2e-75 286.6 420 43.1
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 4.8e-71 272.7 316 47.8
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.4e-62 244.6 158 72.8
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.9e-56 224.2 486 31.5
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.7e-50 203.8 146 61.6
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 1.8e-49 201.1 457 31.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.1e-30 138.7 458 29.3
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 2.5e-27 127.5 93 66.7
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 2.7e-26 124.0 100 61.0
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.5e-24 118.2 113 50.4
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 2.6e-24 117.5 81 61.7
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 2.8e-23 114.0 72 68.1
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 6.3e-15 86.3 77 50.6
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.4e-09 68.6 312 25.6
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 9.8e-08 62.4 66 48.5


User provided reference genes

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