Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0027708 Lotus japonicus HOM05D007541 ORTHO05D009404 2.0e-49 198.7 97 100.0
Medtr5g043830 Medicago truncatula HOM05D007541 ORTHO05D009404 1.6e-22 109.4 102 56.9
TPR.G24449 Trifolium pratense HOM05D007541 ORTHO05D009404 1.8e-21 105.9 116 56.0
Lalb_Chr10g0098651 Lupinus albus HOM05D007541 ORTHO05D009404 3.0e-21 105.1 83 60.2
Lalb_Chr05g0220081 Lupinus albus HOM05D007541 ORTHO05D009404 5.1e-21 104.4 91 61.5
Lalb_Chr17g0341081 Lupinus albus HOM05D007541 ORTHO05D009404 2.5e-20 102.1 94 54.3
Lj4g0006658 Lotus japonicus HOM05D007541 ORTHO05D009404 2.4e-18 95.5 94 57.4
Glyma.01G056400 Glycine max HOM05D007541 ORTHO05D009404 4.0e-18 94.7 96 54.2
Phvul.002G081400 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 1.2e-17 93.2 98 52.0
Lalb_Chr04g0255771 Lupinus albus HOM05D007541 ORTHO05D009404 5.8e-17 90.9 71 60.6
Glyma.02G115000 Glycine max HOM05D007541 ORTHO05D009404 7.6e-17 90.5 57 70.2
Lalb_Chr04g0255761 Lupinus albus HOM05D007541 ORTHO05D009404 7.6e-17 90.5 100 52.0
VMungo1215G1351 Vigna mungo HOM05D007541 ORTHO05D009404 2.3e-13 79.0 57 63.2
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 3.0e-13 78.6 102 51.0
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 6.7e-13 77.4 102 51.0
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 8.7e-13 77.0 81 56.8
Manes.01G029500 Manihot esculenta HOM05D007541 ORTHO05D009404 1.5e-12 76.3 102 45.1
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 9.7e-12 73.6 87 47.1
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 1.3e-11 73.2 97 46.4
Thecc.02G334900 Theobroma cacao HOM05D007541 ORTHO05D009404 1.3e-11 73.2 116 43.1
Cfa008899 Carpinus fangiana HOM05D007541 ORTHO05D009404 3.7e-11 71.6 104 45.2
Carub.0002s1591 Capsella rubella HOM05D007541 ORTHO05D009404 4.8e-11 71.2 92 43.5
AL2G28420 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 8.2e-11 70.5 58 56.9
TPR.G34056 Trifolium pratense HOM05D007541 ORTHO05D009404 8.2e-11 70.5 95 48.4
arahy.Tifrunner.gnm1.ann1.USME0F Arachis hypogaea HOM05D007541 ORTHO05D009404 1.4e-10 69.7 104 51.9
CiPaw.06G090800 Carya illinoinensis HOM05D007541 ORTHO05D009404 2.4e-10 68.9 105 43.8
arahy.Tifrunner.gnm1.ann1.B7DCA1 Arachis hypogaea HOM05D007541 ORTHO05D009404 3.1e-10 68.6 104 51.9
AT1G69320 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 4.1e-10 68.2 96 43.8
A07p13000 Brassica napus HOM05D007541 ORTHO05D009404 5.3e-10 67.8 57 57.9
TPR.G741 Trifolium pratense HOM05D007541 ORTHO05D009404 5.3e-10 67.8 95 47.4
BcaB05g21930 Brassica carinata HOM05D007541 ORTHO05D009404 6.9e-10 67.4 61 57.4
Duzib268G0968 Durio zibethinus HOM05D007541 ORTHO05D009404 6.9e-10 67.4 105 46.7
Aa31LG7G8500 Aethionema arabicum HOM05D001658 ORTHO05D001406 9.0e-10 67.0 84 47.6
A08p27410 Brassica napus HOM05D007541 ORTHO05D009404 1.2e-09 66.6 116 38.8
A09p39990 Brassica napus HOM05D007541 ORTHO05D009404 1.2e-09 66.6 111 41.4
BraA08t34682Z Brassica rapa HOM05D007541 ORTHO05D009404 1.2e-09 66.6 116 38.8
BraA09t39497Z Brassica rapa HOM05D007541 ORTHO05D009404 1.2e-09 66.6 111 41.4
BcaC01g01749 Brassica carinata HOM05D007541 ORTHO05D009404 1.5e-09 66.2 61 57.4
C03p72330 Brassica napus HOM05D007541 ORTHO05D009404 1.5e-09 66.2 61 57.4
C07p19450 Brassica napus HOM05D007541 ORTHO05D009404 1.5e-09 66.2 59 55.9
BolC3t19527H Brassica oleracea HOM05D007541 ORTHO05D009404 1.5e-09 66.2 61 57.4
BolC7t42463H Brassica oleracea HOM05D007541 ORTHO05D009404 1.5e-09 66.2 59 55.9
Carub.0001s2443 Capsella rubella HOM05D007541 ORTHO05D009404 1.5e-09 66.2 59 59.3
CARHR062200 Cardamine hirsuta HOM05D007541 ORTHO05D009404 2.0e-09 65.9 95 43.2
Duzib248G1062 Durio zibethinus HOM05D007541 ORTHO05D009404 2.6e-09 65.5 111 41.4
Thhalv10019344m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 2.6e-09 65.5 104 41.3
AL1G39130 Arabidopsis lyrata HOM05D007541 ORTHO05D009404 3.4e-09 65.1 116 38.8
AT1G26600 Arabidopsis thaliana HOM05D007541 ORTHO05D009404 4.5e-09 64.7 61 55.7
BcaC05g26408 Brassica carinata HOM05D007541 ORTHO05D009404 5.9e-09 64.3 56 57.1
Phvul.002G168200 Phaseolus vulgaris HOM05D007541 ORTHO05D009404 1.0e-08 63.5 57 54.4
THA.LOC104822896 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 1.0e-08 63.5 57 52.6
BcaB03g14076 Brassica carinata HOM05D007541 ORTHO05D009404 1.3e-08 63.2 105 41.0
MELO3C012140.2 Cucumis melo HOM05D007541 ORTHO05D009404 1.7e-08 62.8 59 55.9
BcaB03g11998 Brassica carinata HOM05D007541 ORTHO05D009404 2.2e-08 62.4 63 52.4
FAN12G3046 Fragaria x ananassa HOM05D007541 ORTHO05D009404 2.2e-08 62.4 73 47.9
BcaC05g26410 Brassica carinata HOM05D007541 ORTHO05D009404 2.9e-08 62.0 114 37.7
BolC5t31179H Brassica oleracea HOM05D007541 ORTHO05D009404 2.9e-08 62.0 114 37.7
FAN22G1195 Fragaria x ananassa HOM05D007541 ORTHO05D009404 2.9e-08 62.0 72 45.8
PGR102G1405 Punica granatum HOM05D007541 ORTHO05D009404 2.9e-08 62.0 59 55.9
BraA07t29071Z Brassica rapa HOM05D007541 ORTHO05D009404 5.0e-08 61.2 104 38.5
Thhalv10009109m.g Eutrema salsugineum HOM05D007541 ORTHO05D009404 5.0e-08 61.2 60 51.7
FAN17G1776 Fragaria x ananassa HOM05D007541 ORTHO05D009404 5.0e-08 61.2 72 45.8
C05p24450 Brassica napus HOM05D007541 ORTHO05D009404 6.5e-08 60.8 116 38.8
CsaV3_5G033190 Cucumis sativus L. HOM05D007541 ORTHO05D009404 8.5e-08 60.5 59 54.2
FvH4_4g30410 Fragaria vesca HOM05D007541 ORTHO05D009404 8.5e-08 60.5 72 45.8
QL03p070744 Quercus lobata HOM05D007541 ORTHO05D009404 8.5e-08 60.5 59 54.2
CARHR025370 Cardamine hirsuta HOM05D007541 ORTHO05D009404 1.1e-07 60.1 112 38.4
Ciclev10033671m.g Citrus clementina HOM05D007541 ORTHO05D009404 1.9e-07 59.3 63 47.6
QL03p071059 Quercus lobata HOM05D007541 ORTHO05D009404 1.9e-07 59.3 59 54.2
Sopen05g007360 Solanum pennellii HOM05D007541 ORTHO05D009404 5.5e-07 57.8 92 43.5
Potri.008G093500 Populus trichocarpa HOM05D007541 ORTHO05D009404 7.2e-07 57.4 61 54.1
THA.LOC104805033 Tarenaya hassleriana HOM05D007541 ORTHO05D009404 7.2e-07 57.4 111 36.0
Glyma.20G027000 Glycine max HOM05D007541 ORTHO05D009404 1.6e-06 56.2 68 47.1
Hma1.2p1_0354F.1_g133580 Hydrangea macrophylla HOM05D007541 ORTHO05D009404 1.6e-06 56.2 104 42.3
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 1.6e-06 56.2 98 41.8
Sabra10G0122200 Salix brachista HOM05D007541 ORTHO05D009404 2.1e-06 55.8 57 52.6
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 6.1e-06 54.3 105 41.0


User provided reference genes

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