Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0027470 Lotus japonicus HOM05D007804 ORTHO05D009828 6.8e-88 327.4 177 100.0
Medtr6g009320 Medicago truncatula HOM05D007804 ORTHO05D009828 7.3e-50 201.1 194 67.0
Psat1g077320 Pisum sativum HOM05D007804 ORTHO05D009828 8.4e-46 187.6 191 58.1
Lalb_Chr21g0319161 Lupinus albus HOM05D007804 ORTHO05D009828 5.4e-45 184.9 190 64.7
VMungo0464G0276 Vigna mungo HOM05D007804 ORTHO05D009828 1.6e-44 183.3 191 64.9
Glyma.13G067400 Glycine max HOM05D007804 ORTHO05D009828 4.3e-42 175.3 194 64.4
Psat1g077160 Pisum sativum HOM05D007804 ORTHO05D009828 7.3e-42 174.5 200 58.5
TPR.G32605 Trifolium pratense HOM05D007804 ORTHO05D009828 7.3e-42 174.5 199 60.8
Phvul.004G023300 Phaseolus vulgaris HOM05D007804 ORTHO05D009828 2.8e-41 172.6 194 63.9
Glyma.19G017000 Glycine max HOM05D007804 ORTHO05D009828 5.8e-39 164.9 184 63.6
Lalb_Chr02g0159931 Lupinus albus HOM05D007804 ORTHO05D009828 1.3e-30 137.1 199 55.3
Thecc.04G069800 Theobroma cacao HOM05D007804 ORTHO05D009828 4.5e-23 112.1 167 43.7
Prupe.3G275600 Prunus persica HOM05D007804 ORTHO05D009828 6.5e-22 108.2 159 45.9
Cfa007487 Carpinus fangiana HOM05D007804 ORTHO05D009828 3.5e-20 102.4 162 44.4
Duzib147G0590 Durio zibethinus HOM05D007804 ORTHO05D009828 4.6e-20 102.1 173 42.2
QL02p079311 Quercus lobata HOM05D007804 ORTHO05D009828 7.9e-20 101.3 150 46.7
CiPaw.03G032600 Carya illinoinensis HOM05D007804 ORTHO05D009828 8.7e-19 97.8 169 45.6
Ciclev10012771m.g Citrus clementina HOM05D007804 ORTHO05D009828 1.6e-17 93.6 178 42.7
FAN09G3343 Fragaria x ananassa HOM05D007804 ORTHO05D009828 3.1e-16 89.4 156 41.7
Gorai.006G026600 Gossypium raimondii HOM05D007804 ORTHO05D009828 3.1e-16 89.4 179 43.0
FvH4_6g49720 Fragaria vesca HOM05D007804 ORTHO05D009828 2.0e-15 86.7 155 41.3
FAN14G3729 Fragaria x ananassa HOM05D007804 ORTHO05D009828 2.0e-15 86.7 155 41.3
Gohir.D09G022600 Gossypium hirsutum HOM05D007804 ORTHO05D009828 2.0e-15 86.7 163 44.2
Manes.15G177500 Manihot esculenta HOM05D007804 ORTHO05D009828 2.6e-15 86.3 160 42.5
RcHm_v2.0_Chr2g0169751 Rosa chinensis HOM05D007804 ORTHO05D009828 3.4e-15 85.9 150 38.7
Gohir.A09G023300 Gossypium hirsutum HOM05D007804 ORTHO05D009828 4.5e-15 85.5 177 42.9
COL.COLO4_36996 Corchorus olitorius HOM05D007804 ORTHO05D009828 5.8e-15 85.1 145 44.8
FAN05G0497 Fragaria x ananassa HOM05D007804 ORTHO05D009828 5.8e-15 85.1 155 40.6
FAN02G3435 Fragaria x ananassa HOM05D007804 ORTHO05D009828 1.3e-14 84.0 155 40.6
Cpa.g.sc14.66 Carica papaya HOM05D007804 ORTHO05D009828 2.9e-14 82.8 162 40.7
Manes.17G117500 Manihot esculenta HOM05D007804 ORTHO05D009828 1.4e-13 80.5 159 38.4
Nitab4.5_0002265g0080 Nicotiana tabacum HOM05D007804 ORTHO05D009828 2.5e-13 79.7 174 36.8
Peaxi162Scf00129g00628 Petunia axillaris HOM05D007804 ORTHO05D009828 1.6e-12 77.0 180 37.8
CSS0004616 Camellia sinensis var. sinensis HOM05D007804 ORTHO05D009828 2.7e-12 76.3 173 41.6
Manes.17G120501 Manihot esculenta HOM05D007804 ORTHO05D009828 2.7e-12 76.3 161 37.3
Nitab4.5_0001239g0070 Nicotiana tabacum HOM05D007804 ORTHO05D009828 3.0e-11 72.8 161 37.3
Nn3g17058 Nelumbo nucifera HOM05D007804 ORTHO05D009828 5.1e-11 72.0 189 35.4
BcaC03g17515 Brassica carinata HOM05D007804 ORTHO05D009828 6.7e-11 71.6 204 36.3
BolC2t11538H Brassica oleracea HOM05D007804 ORTHO05D009828 6.7e-11 71.6 204 36.3
Migut.K01348 Erythranthe guttata HOM05D007804 ORTHO05D009828 8.7e-11 71.2 167 34.7
SGA_v2.0_scaffold135G34801 Striga asiatica HOM05D007804 ORTHO05D009828 8.7e-11 71.2 153 39.9
C02p54770 Brassica napus HOM05D007804 ORTHO05D009828 1.1e-10 70.9 204 36.3
PGSC0003DMG402001401 Solanum tuberosum HOM05D007804 ORTHO05D009828 3.3e-10 69.3 161 36.6
BcaB07g30130 Brassica carinata HOM05D007804 ORTHO05D009828 4.3e-10 68.9 193 34.7
ClCG09G018550 Citrullus lanatus HOM05D007804 ORTHO05D009828 7.4e-10 68.2 174 42.5
TWI36G0430 Tripterygium wilfordii HOM05D007804 ORTHO05D009828 7.4e-10 68.2 166 39.2
MSTRG.23968 Avicennia marina HOM05D007804 ORTHO05D009828 9.7e-10 67.8 151 42.4
THA.LOC104805425 Tarenaya hassleriana HOM05D007804 ORTHO05D009828 9.7e-10 67.8 212 32.5
Atru.chr8.2473 Acer truncatum HOM05D007804 ORTHO05D009828 1.6e-09 67.0 64 57.8
Actinidia02723 Actinidia chinensis HOM05D007804 ORTHO05D009828 1.6e-09 67.0 158 34.8
Solyc02g087440.4 Solanum lycopersicum HOM05D007804 ORTHO05D009828 1.6e-09 67.0 158 37.3
Thhalv10004896m.g Eutrema salsugineum HOM05D007804 ORTHO05D009828 2.2e-09 66.6 209 32.5
Sp2g17190 Schrenkiella parvula HOM05D007804 ORTHO05D009828 3.7e-09 65.9 183 34.4
Sopen02g032190 Solanum pennellii HOM05D007804 ORTHO05D009828 3.7e-09 65.9 158 37.3
MELO3C021487.2 Cucumis melo HOM05D007804 ORTHO05D009828 4.8e-09 65.5 177 39.5
BraA02t08592Z Brassica rapa HOM05D007804 ORTHO05D009828 6.3e-09 65.1 177 31.6
Sed0002452 Sechium edule HOM05D007804 ORTHO05D009828 6.3e-09 65.1 168 39.9
BraA06t26974Z Brassica rapa HOM05D007804 ORTHO05D009828 8.2e-09 64.7 185 34.6
Aa31LG2G4650 Aethionema arabicum HOM05D007804 ORTHO05D009828 1.1e-08 64.3 191 32.5
Rhsim08G0063700 Rhododendron simsii HOM05D007804 ORTHO05D009828 1.1e-08 64.3 158 36.7
Sed0004613 Sechium edule HOM05D007804 ORTHO05D009828 1.1e-08 64.3 164 43.3
Sed0005835 Sechium edule HOM05D007804 ORTHO05D009828 1.1e-08 64.3 164 43.3
A02p35930 Brassica napus HOM05D007804 ORTHO05D009828 1.4e-08 63.9 177 31.6
A06p40550 Brassica napus HOM05D007804 ORTHO05D009828 1.4e-08 63.9 185 34.6
CARHR292560 Cardamine hirsuta HOM05D007804 ORTHO05D009828 1.4e-08 63.9 193 33.7
AL5G18030 Arabidopsis lyrata HOM05D007804 ORTHO05D009828 1.8e-08 63.5 191 32.5
DCAR_011178 Daucus carota HOM05D007804 ORTHO05D009828 1.8e-08 63.5 188 34.6
CsaV3_5G037680 Cucumis sativus L. HOM05D007804 ORTHO05D009828 2.4e-08 63.2 181 39.2
Oeu027756.1 Olea europaea HOM05D007804 ORTHO05D009828 3.1e-08 62.8 148 36.5
AT3G28420 Arabidopsis thaliana HOM05D007804 ORTHO05D009828 9.0e-08 61.2 196 33.7
BcaC06g30917 Brassica carinata HOM05D007804 ORTHO05D009828 9.0e-08 61.2 166 34.3
SalBow1G7839 Salvia bowleyana HOM05D007804 ORTHO05D009828 1.2e-07 60.8 145 35.9
Migut.H00872 Erythranthe guttata HOM05D007804 ORTHO05D009828 1.5e-07 60.5 160 33.8
Carub.0005s0691 Capsella rubella HOM05D007804 ORTHO05D009828 2.6e-07 59.7 174 34.5
Lsat_1_v5_gn_4_180340 Lactuca sativa HOM05D007804 ORTHO05D009828 2.6e-07 59.7 151 38.4
BcaC06g33740 Brassica carinata HOM05D007804 ORTHO05D009828 3.4e-07 59.3 167 33.5
C07p37470 Brassica napus HOM05D000068 ORTHO05D009828 3.4e-07 59.3 173 32.4
BolC7t44259H Brassica oleracea HOM05D000068 ORTHO05D009828 3.4e-07 59.3 173 32.4
CAN.G206.83 Capsicum annuum HOM05D007804 ORTHO05D009828 3.4e-07 59.3 166 33.7
Nn4g22964 Nelumbo nucifera HOM05D007804 ORTHO05D009828 7.7e-07 58.2 139 36.0
Oeu017303.1 Olea europaea HOM05D007804 ORTHO05D009828 1.0e-06 57.8 154 34.4
TAR622G0153 Trochodendron aralioides HOM05D007804 ORTHO05D009828 1.0e-06 57.8 158 33.5


User provided reference genes

Program Settings