Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0027212 Lotus japonicus HOM05D006919 ORTHO05D008705 3.2e-173 611.7 314 100.0
Medtr6g069620 Medicago truncatula HOM05D006919 ORTHO05D008705 6.5e-150 534.3 303 88.4
TPR.G8644 Trifolium pratense HOM05D006919 ORTHO05D008705 1.4e-149 533.1 303 88.4
Phvul.004G150300 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 2.1e-148 529.3 303 87.8
Psat1g030800 Pisum sativum HOM05D006919 ORTHO05D008705 2.1e-148 529.3 303 87.5
Phvul.004G149400 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 1.8e-147 526.2 303 87.1
Glyma.07G102800 Glycine max HOM05D006919 ORTHO05D008705 8.7e-147 523.9 306 86.3
Lalb_Chr24g0398171 Lupinus albus HOM05D006919 ORTHO05D008705 3.1e-144 515.4 303 83.8
arahy.Tifrunner.gnm1.ann1.CTKR59 Arachis hypogaea HOM05D006919 ORTHO05D008705 8.8e-139 497.3 303 80.5
Potri.015G037600 Populus trichocarpa HOM05D006919 ORTHO05D008705 5.0e-134 481.5 302 78.8
CANSAT80G0223 Cannabis sativa HOM05D006919 ORTHO05D008705 6.5e-134 481.1 303 78.5
Dinv08205 Davidia involucrata HOM05D006919 ORTHO05D008705 8.5e-134 480.7 304 78.3
VMungo0464G0753 Vigna mungo HOM05D006919 ORTHO05D008705 1.9e-133 479.6 303 81.2
MD06G1227700 Malus domestica HOM05D006919 ORTHO05D008705 3.6e-132 475.3 304 76.0
Actinidia18895 Actinidia chinensis HOM05D006919 ORTHO05D008705 6.1e-132 474.6 304 76.6
Prupe.5G234100 Prunus persica HOM05D006919 ORTHO05D008705 6.1e-132 474.6 304 78.3
arahy.Tifrunner.gnm1.ann1.95HZXM Arachis hypogaea HOM05D006919 ORTHO05D008705 2.3e-131 472.6 346 70.5
CiPaw.15G143800 Carya illinoinensis HOM05D006919 ORTHO05D008705 1.5e-130 469.9 304 77.3
COL.COLO4_04912 Corchorus olitorius HOM05D006919 ORTHO05D008705 2.0e-130 469.5 301 76.1
Gohir.A07G060000 Gossypium hirsutum HOM05D006919 ORTHO05D008705 4.8e-129 464.9 302 74.8
Atru.chr9.1714 Acer truncatum HOM05D006919 ORTHO05D008705 8.2e-129 464.2 303 74.6
Gorai.001G068200 Gossypium raimondii HOM05D006919 ORTHO05D008705 8.2e-129 464.2 302 74.8
CSS0007871 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 1.1e-128 463.8 306 77.1
QL10p029823 Quercus lobata HOM05D006919 ORTHO05D008705 3.1e-128 462.2 303 75.9
Gohir.D07G064700 Gossypium hirsutum HOM05D006919 ORTHO05D008705 4.1e-128 461.8 302 74.5
CsaV3_1G007200 Cucumis sativus L. HOM05D006919 ORTHO05D008705 5.3e-128 461.5 301 75.7
TAR629G0573 Trochodendron aralioides HOM05D006919 ORTHO05D008705 5.3e-128 461.5 303 76.6
Sed0003421 Sechium edule HOM05D006919 ORTHO05D008705 9.1e-128 460.7 303 74.6
FAN08G0969 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.2e-127 460.3 304 73.7
Thecc.03G055400 Theobroma cacao HOM05D006919 ORTHO05D008705 1.2e-127 460.3 301 74.4
RcHm_v2.0_Chr7g0178261 Rosa chinensis HOM05D006919 ORTHO05D008705 2.6e-127 459.1 304 72.7
Duzib205G1348 Durio zibethinus HOM05D006919 ORTHO05D008705 7.7e-127 457.6 301 73.8
FAN13G2797 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.0e-126 457.2 304 72.7
FvH4_5g17430 Fragaria vesca HOM05D006919 ORTHO05D008705 1.7e-126 456.4 305 73.1
FAN04G0116 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.1e-125 453.8 305 73.1
PGR083G2730 Punica granatum HOM05D006919 ORTHO05D008705 1.9e-125 453.0 303 72.3
Sp1g35490 Schrenkiella parvula HOM05D006919 ORTHO05D008705 3.2e-125 452.2 303 73.3
TWI81G0447 Tripterygium wilfordii HOM05D006919 ORTHO05D008705 3.2e-125 452.2 304 74.3
Oeu026273.1 Olea europaea HOM05D006919 ORTHO05D008705 5.5e-125 451.4 303 73.9
Atru.chr9.1680 Acer truncatum HOM05D006919 ORTHO05D008705 9.4e-125 450.7 310 72.3
Aa31LG10G5250 Aethionema arabicum HOM05D006919 ORTHO05D008705 2.1e-124 449.5 304 71.4
AT1G48550 Arabidopsis thaliana HOM05D006919 ORTHO05D008705 2.1e-124 449.5 303 72.6
Carub.0001s3766 Capsella rubella HOM05D006919 ORTHO05D008705 4.7e-124 448.4 303 71.9
CAN.G843.52 Capsicum annuum HOM05D006919 ORTHO05D008705 6.1e-124 448.0 306 72.9
AL1G55190 Arabidopsis lyrata HOM05D006919 ORTHO05D008705 8.0e-124 447.6 303 72.3
Nn4g24311 Nelumbo nucifera HOM05D006919 ORTHO05D008705 8.0e-124 447.6 304 73.0
Thhalv10012210m.g Eutrema salsugineum HOM05D006919 ORTHO05D008705 1.0e-123 447.2 303 71.9
GSVIVG01008449001 Vitis vinifera HOM05D006919 ORTHO05D008705 1.0e-123 447.2 303 72.3
PGSC0003DMG402005674 Solanum tuberosum HOM05D006919 ORTHO05D008705 5.2e-123 444.9 306 72.2
C06p03070 Brassica napus HOM05D006919 ORTHO05D008705 6.7e-123 444.5 303 71.9
BolC6t35427H Brassica oleracea HOM05D006919 ORTHO05D008705 6.7e-123 444.5 303 71.9
THA.LOC104820349 Tarenaya hassleriana HOM05D006919 ORTHO05D008705 8.8e-123 444.1 304 73.0
BcaB07g33748 Brassica carinata HOM05D006919 ORTHO05D008705 2.0e-122 443.0 303 71.9
Migut.D01529 Erythranthe guttata HOM05D006919 ORTHO05D008705 3.3e-122 442.2 305 71.5
A06p04410 Brassica napus HOM05D006919 ORTHO05D008705 5.7e-122 441.4 303 71.3
Sopen03g037620 Solanum pennellii HOM05D006919 ORTHO05D008705 5.7e-122 441.4 306 71.6
Aqoxy3G04092 Aquilegia oxysepala HOM05D006919 ORTHO05D008705 7.5e-122 441.0 303 71.0
AUR62020416 Chenopodium quinoa HOM05D006919 ORTHO05D008705 1.3e-121 440.3 302 72.2
Solyc03g118660.3 Solanum lycopersicum HOM05D006919 ORTHO05D008705 1.3e-121 440.3 308 70.5
Ca_25336_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 2.2e-121 439.5 278 82.7
Ca_29640_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 2.2e-121 439.5 278 82.7
Migut.D01538 Erythranthe guttata HOM05D006919 ORTHO05D008705 2.2e-121 439.5 305 71.5
BraA06t23646Z Brassica rapa HOM05D006919 ORTHO05D008705 2.8e-121 439.1 305 71.5
BcaC08g43045 Brassica carinata HOM05D006919 ORTHO05D008705 1.4e-120 436.8 309 70.2
arahy.Tifrunner.gnm1.ann1.2R737Y Arachis hypogaea HOM05D006919 ORTHO05D008705 2.4e-120 436.0 303 73.6
Cc04_g06200 Coffea canephora HOM05D006919 ORTHO05D008705 3.1e-120 435.6 311 69.5
Hund01978 Selenicereus undatus HOM05D006919 ORTHO05D008705 2.0e-119 433.0 304 69.4
MSTRG.9306 Avicennia marina HOM05D006919 ORTHO05D008705 7.7e-119 431.0 304 70.7
PSO063G3076 Papaver somniferum HOM05D006919 ORTHO05D008705 1.6e-116 423.3 304 70.1
ECA233G0189 Erigeron canadensis HOM05D006919 ORTHO05D008705 2.1e-116 422.9 303 68.3
Lsat_1_v5_gn_8_720 Lactuca sativa HOM05D006919 ORTHO05D008705 6.1e-116 421.4 302 67.5
arahy.Tifrunner.gnm1.ann1.54PB3V Arachis hypogaea HOM05D006919 ORTHO05D008705 1.8e-115 419.9 324 68.8
Cpa.g.sc3.392 Carica papaya HOM05D006919 ORTHO05D008705 3.0e-115 419.1 324 65.4
Ciclev10010588m.g Citrus clementina HOM05D006919 ORTHO05D008705 5.2e-115 418.3 302 69.2
FAN18G1663 Fragaria x ananassa HOM05D006919 ORTHO05D008705 5.2e-115 418.3 304 69.4
Manes.06G005400 Manihot esculenta HOM05D006919 ORTHO05D008705 1.5e-114 416.8 269 77.3
AUR62015799 Chenopodium quinoa HOM05D006919 ORTHO05D008705 5.7e-114 414.8 283 72.1
CSS0013537 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 6.3e-113 411.4 301 72.4
PSO754G0044 Papaver somniferum HOM05D006919 ORTHO05D008705 2.4e-112 409.5 304 67.4
HanXRQChr05g0142681 Helianthus annuus HOM05D006919 ORTHO05D008705 5.9e-111 404.8 303 65.7
ATR1100G039 Amborella trichopoda HOM05D006919 ORTHO05D008705 1.0e-110 404.1 307 65.8
Nitab4.5_0013135g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 1.7e-110 403.3 284 71.8
QL10p030230 Quercus lobata HOM05D006919 ORTHO05D008705 2.2e-110 402.9 298 69.1
EL10Ac4g07782 Beta vulgaris HOM05D006919 ORTHO05D008705 1.4e-107 393.7 303 67.3
MELO3C002137.2 Cucumis melo HOM05D006919 ORTHO05D008705 1.1e-101 374.0 254 73.6
HPP92_023812 Vanilla planifolia HOM05D006919 ORTHO05D008705 5.2e-99 365.2 306 61.8
ClCG04G010590 Citrullus lanatus HOM05D006919 ORTHO05D008705 1.5e-98 363.6 303 63.7
Eucgr.B00878 Eucalyptus grandis HOM05D006919 ORTHO05D008705 1.2e-92 344.0 233 72.1
Peaxi162Scf00314g00331 Petunia axillaris HOM05D006919 ORTHO05D008705 1.3e-89 334.0 236 69.1
Mapoly0012s0164 Marchantia polymorpha HOM05D006919 ORTHO05D008705 6.0e-87 325.1 297 54.2
vmacro16410 Vaccinium macrocarpon HOM05D006919 ORTHO05D008705 1.3e-86 323.9 266 65.8
AagrBONN_evm.TU.Sc2ySwM_344.2286 Anthoceros agrestis HOM05D006919 ORTHO05D008705 1.9e-85 320.1 304 50.7
Nitab4.5_0012026g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 1.2e-82 310.8 215 71.2
MBI09_g15241_MAGBIO Magnolia biondii HOM05D006919 ORTHO05D008705 4.6e-79 298.9 225 67.1
Pp3c2_29770 Physcomitrium patens HOM05D006919 ORTHO05D008705 4.6e-79 298.9 285 49.5
Pp3c1_6570 Physcomitrium patens HOM05D006919 ORTHO05D008705 3.0e-78 296.2 289 49.5
CDE08G0345 Ceratophyllum demersum HOM05D006919 ORTHO05D008705 5.1e-78 295.4 305 52.1
Glyma.U031615 Glycine max HOM05D006919 ORTHO05D008705 6.2e-76 288.5 166 84.3
AagrBONN_evm.TU.Sc2ySwM_228.5103 Anthoceros agrestis HOM05D006919 ORTHO05D008705 4.1e-72 275.8 309 44.3
CARHR038160 Cardamine hirsuta HOM05D006919 ORTHO05D008705 7.1e-72 275.0 182 72.0
Eucgr.B00996 Eucalyptus grandis HOM05D006919 ORTHO05D008705 7.1e-72 275.0 233 60.5
SMO143G0218 Selaginella moellendorffii HOM05D006919 ORTHO05D008705 8.1e-68 261.5 268 51.5
Haze_18872 Corylus avellana HOM05D006919 ORTHO05D008705 2.8e-60 236.5 318 46.5
CBR_g44935 Chara braunii HOM05D006919 ORTHO05D008705 3.1e-59 233.0 312 42.6
Cfa019651 Carpinus fangiana HOM05D006919 ORTHO05D008705 1.2e-55 221.1 146 72.6
RcHm_v2.0_Chr5g0035741 Rosa chinensis HOM05D006919 ORTHO05D008705 5.1e-46 189.1 127 69.3
RcHm_v2.0_Chr7g0224581 Rosa chinensis HOM05D006919 ORTHO05D008705 6.2e-44 182.2 129 67.4
arahy.Tifrunner.gnm1.ann1.248BIT Arachis hypogaea HOM05D006919 ORTHO05D008705 1.4e-35 154.5 103 74.8
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 9.0e-35 151.8 216 44.0
RcHm_v2.0_Chr7g0212051 Rosa chinensis HOM05D006919 ORTHO05D008705 2.6e-26 123.6 88 67.0
Lj9A419G30 Lonicera japonica HOM05D006919 ORTHO05D008705 2.9e-25 120.2 233 34.3
Lj9C419T19 Lonicera japonica HOM05D006919 ORTHO05D008705 2.1e-23 114.0 70 81.4
SEGI_02358 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 2.1e-23 114.0 93 61.3
CBR_g74660 Chara braunii HOM05D006919 ORTHO05D008705 2.7e-23 113.6 186 39.8
SEGI_39350 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 2.4e-11 73.9 72 50.0
Lj5g0003691 Lotus japonicus HOM05D006919 ORTHO05D236465 2.7e-07 60.5 36 86.1


User provided reference genes

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