Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 2194.1 1094 100.0
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1955.6 1087 88.9
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1946.8 1094 88.7
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1943.7 1087 88.1
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1940.6 1087 88.9
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1931.4 1087 87.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1924.1 1094 87.9
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1913.3 1085 87.1
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1896.7 1094 86.0
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1881.7 1089 85.7
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1845.9 1086 84.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1845.9 1086 84.3
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1725.7 1087 77.8
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1721.4 1088 78.0
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1717.6 1090 77.2
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1714.1 1087 77.7
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1704.1 1081 77.9
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1697.9 1090 77.0
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1692.2 1087 76.7
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1690.6 1088 76.2
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1685.2 1083 76.6
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1682.2 1088 76.1
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1681.0 1086 76.1
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1679.5 1087 76.7
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1676.8 1076 77.0
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1087 77.0
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1676.0 1083 75.6
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1674.1 1087 76.0
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1672.5 1086 75.2
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1662.9 1088 75.7
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1662.9 1084 76.0
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1661.4 1169 71.5
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1660.2 1092 75.5
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1659.0 1086 75.1
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1655.6 1086 75.1
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1653.3 1169 71.3
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1651.7 1087 76.1
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1649.0 1089 75.0
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1649.0 1089 74.9
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1648.3 1083 76.1
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1644.8 1088 75.6
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1641.7 1085 74.5
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1640.6 1092 73.7
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1638.6 1089 74.3
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1636.3 1088 74.7
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1633.2 1083 74.3
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1633.2 1085 74.4
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1632.5 1088 74.7
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1631.7 1097 74.9
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1629.8 1088 74.4
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1625.5 1111 72.3
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1615.5 1091 72.5
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1612.0 1089 72.2
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1611.7 1098 72.4
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1597.0 1092 72.8
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1085 72.4
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1590.9 1084 71.8
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1581.2 1090 71.4
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1578.5 1097 71.5
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1087 72.0
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1573.5 1084 71.7
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1571.6 1096 71.9
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1570.1 1087 71.4
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1570.1 1091 71.0
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1570.1 1087 71.7
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1569.7 1091 72.0
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1114 70.5
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1084 71.2
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1084 71.7
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1567.7 1083 71.5
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1567.7 1084 71.3
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1096 70.6
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1566.2 1087 71.6
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1564.3 1087 71.7
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1564.3 1087 71.7
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1563.5 1087 71.8
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1563.5 1083 71.1
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1562.0 1087 71.4
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1558.9 1070 72.0
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1557.7 1087 71.4
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 1087 71.4
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1556.6 1086 71.5
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1556.2 1087 71.3
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1554.3 1086 69.6
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1549.6 1106 68.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 1115 69.5
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 1089 72.1
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1548.1 1010 75.0
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1548.1 1086 71.2
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1545.4 1092 69.7
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1545.0 1084 71.1
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1537.3 1086 70.2
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1535.8 1090 70.6
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1526.5 1082 69.5
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1525.8 999 76.2
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1525.4 1108 69.9
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1522.7 1086 70.3
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1521.1 1159 65.8
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1517.7 1083 68.9
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1516.1 1084 68.8
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1511.1 1086 68.3
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1503.0 1106 68.1
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1501.9 1002 74.2
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1491.1 1058 69.7
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1462.6 1111 65.9
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1457.2 1090 66.1
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1440.2 981 72.0
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1420.6 1083 66.4
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1419.4 1087 67.6
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1414.4 1107 63.8
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1326.2 1088 64.2
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1287.7 790 80.8
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1177.9 1091 54.6
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1175.6 1097 54.2
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1167.1 689 82.3
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1157.5 1133 52.6
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1145.2 1090 53.6
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1129.8 717 77.7
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1125.2 671 80.9
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1124.4 1090 52.1
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 2.0e-307 1059.3 757 70.8
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 6.5e-290 1001.1 844 59.4
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-275 953.4 817 60.2
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.2e-274 949.5 613 77.3
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 4.6e-251 872.1 962 48.5
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 7.5e-246 854.7 626 69.0
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 3.9e-234 815.8 499 79.0
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.9e-225 786.9 634 62.8
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 2.1e-208 730.3 974 45.0
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 3.8e-173 613.2 589 54.8
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.2e-164 583.6 430 68.8
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.5e-148 531.6 303 81.8
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.3e-130 471.1 312 72.8
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 4.6e-126 456.8 388 63.4
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.2e-78 299.3 297 54.2
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 4.8e-75 287.3 241 61.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 4.1e-66 257.7 136 86.8
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.5e-64 250.0 205 61.0
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 8.2e-51 206.8 138 69.6
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 8.8e-37 160.2 238 42.9
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.5e-33 148.3 140 57.1
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 4.0e-29 134.8 108 63.0
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.5e-28 132.9 156 46.8
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.3e-27 129.8 72 83.3
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 1.8e-26 125.9 145 48.3
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 2.0e-25 122.5 97 62.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 2.9e-19 102.1 88 59.1
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.6e-14 86.3 48 87.5
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.8e-13 82.8 76 50.0
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 5.8e-12 77.8 49 69.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.4e-10 73.2 136 39.7


User provided reference genes

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