Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 5.2e-168 594.3 310 100.0
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 4.5e-95 352.1 315 67.3
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.9e-93 346.7 287 68.6
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 9.4e-93 344.4 301 67.1
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 2.7e-92 342.8 297 66.3
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 2.3e-91 339.7 291 65.3
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 3.3e-90 335.9 294 69.4
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 4.4e-90 335.5 296 65.9
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 6.3e-89 331.6 321 63.6
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.1e-88 330.9 296 65.5
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.0e-86 324.3 297 67.0
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 8.8e-83 311.2 284 64.8
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 8.8e-83 311.2 278 65.5
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 7.4e-82 308.1 277 63.9
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 4.8e-81 305.4 285 64.6
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 4.8e-81 305.4 285 64.6
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 7.0e-80 301.6 296 59.8
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 2.6e-79 299.7 282 63.5
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 7.7e-79 298.1 289 63.7
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.2e-76 290.8 284 61.6
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.6e-76 290.4 265 68.3
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 4.7e-76 288.9 283 62.9
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 6.1e-76 288.5 286 60.5
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.2e-74 284.3 236 69.1
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.2e-74 284.3 255 65.5
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 3.7e-73 279.3 283 62.2
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.1e-72 276.2 284 61.3
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 4.1e-72 275.8 279 61.3
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 7.0e-72 275.0 294 59.2
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 4.5e-71 272.3 215 71.2
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.7e-71 271.6 280 59.3
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 7.7e-71 271.6 279 59.9
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 5.0e-70 268.9 274 59.9
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.1e-69 267.7 245 66.9
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 2.5e-69 266.5 295 56.3
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 7.2e-69 265.0 290 55.5
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.7e-68 263.1 293 57.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 3.6e-68 262.7 307 53.4
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.1e-68 261.9 215 69.3
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 6.1e-68 261.9 291 57.0
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 8.0e-68 261.5 215 69.3
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 8.0e-68 261.5 306 55.6
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.0e-67 261.2 215 69.3
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.0e-67 261.2 293 56.7
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.4e-67 260.8 293 58.0
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.4e-67 260.8 238 62.6
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 4.0e-67 259.2 245 62.4
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.0e-67 259.2 215 69.3
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 8.8e-67 258.1 281 55.9
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.2e-66 257.7 242 65.3
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.5e-66 257.3 289 57.1
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.0e-66 256.9 266 60.5
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 7.5e-66 255.0 282 57.4
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.8e-65 253.1 291 56.0
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.3e-65 251.9 291 55.7
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 8.3e-65 251.5 251 63.3
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 2.4e-64 250.0 266 59.4
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.4e-64 250.0 291 55.7
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 7.0e-64 248.4 217 66.4
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 7.0e-64 248.4 304 53.3
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.2e-63 247.7 292 56.2
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 1.6e-63 247.3 329 48.9
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 2.7e-63 246.5 295 52.9
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 2.7e-63 246.5 304 51.0
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 5.9e-63 245.4 286 54.9
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 7.7e-63 245.0 285 56.1
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.7e-63 245.0 297 53.5
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 7.7e-63 245.0 307 50.5
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.8e-62 242.7 281 55.5
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 4.2e-61 239.2 292 55.1
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 2.8e-60 236.5 226 63.3
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 4.7e-60 235.7 281 54.1
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 6.1e-60 235.3 299 55.2
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 8.0e-60 235.0 289 52.9
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.0e-59 234.6 291 53.6
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.4e-59 234.2 287 56.1
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.8e-59 233.8 315 54.0
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.8e-59 233.8 217 62.7
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 2.3e-59 233.4 275 54.9
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 2.3e-59 233.4 281 53.7
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 2.3e-59 233.4 288 55.6
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 5.2e-59 232.3 281 52.7
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 2.2e-57 226.9 257 56.8
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 3.7e-57 226.1 295 52.5
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.3e-57 225.3 286 53.1
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 5.4e-56 222.2 237 58.2
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 9.2e-56 221.5 176 68.2
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.6e-55 220.7 285 49.8
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 2.7e-55 219.9 290 52.4
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 3.5e-55 219.5 326 46.9
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.0e-54 218.0 262 58.0
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.3e-54 216.9 285 51.9
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.8e-54 216.1 321 47.7
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 9.5e-53 211.5 247 53.8
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.1e-52 210.3 281 48.8
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.2e-50 204.5 324 48.5
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 4.9e-49 199.1 261 52.9
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 8.3e-49 198.4 256 51.6
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 8.3e-49 198.4 303 44.6
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.4e-48 195.7 252 53.6
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 1.6e-47 194.1 314 43.0
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 4.6e-47 192.6 296 47.0
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.0e-46 191.4 234 53.8
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.0e-46 191.4 313 45.7
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 2.3e-46 190.3 272 50.4
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 3.0e-46 189.9 325 44.3
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 1.9e-45 187.2 298 46.3
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.9e-45 187.2 293 45.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.3e-45 186.0 242 48.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 5.6e-45 185.7 275 45.1
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 9.5e-45 184.9 303 46.2
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 9.5e-45 184.9 248 51.6
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 5.2e-43 179.1 308 41.9
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 1.5e-42 177.6 251 49.0
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.5e-42 177.6 258 48.4
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.0e-42 177.2 229 52.8
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 7.5e-42 175.3 258 48.1
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 9.8e-42 174.9 259 49.8
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 9.8e-42 174.9 259 49.8
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 9.8e-42 174.9 240 50.0
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.7e-41 174.1 254 49.2
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.9e-41 173.3 275 46.9
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 3.7e-41 172.9 260 49.2
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 4.9e-41 172.6 252 48.8
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-40 171.4 230 51.3
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.4e-40 171.0 259 48.6
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.9e-40 170.6 249 49.8
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 3.2e-40 169.9 241 49.0
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 5.4e-40 169.1 278 42.4
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 7.0e-40 168.7 273 42.9
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 9.2e-40 168.3 266 47.4
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 9.2e-40 168.3 269 46.5
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 3.5e-39 166.4 264 46.2
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 3.5e-39 166.4 289 44.6
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.0e-38 164.9 257 47.5
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.3e-38 164.5 254 48.0
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 6.6e-38 162.2 264 46.2
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 6.6e-38 162.2 228 51.8
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-37 161.4 262 46.2
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-37 161.4 262 46.2
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 3.3e-37 159.8 243 46.5
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 4.3e-37 159.5 291 41.9
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 2.1e-36 157.1 278 42.4
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 2.3e-35 153.7 291 40.9
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 9.9e-34 148.3 104 75.0
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.2e-33 147.1 227 44.5
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 2.9e-33 146.7 217 47.0
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 8.3e-33 145.2 157 54.1
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 6.0e-31 139.0 107 71.0
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 9.5e-29 131.7 276 39.5
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.2e-28 131.3 236 43.2
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 4.7e-28 129.4 286 36.0
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 6.2e-28 129.0 276 38.8
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 2.4e-27 127.1 286 35.7
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.6e-26 123.6 266 37.6
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 9.9e-26 121.7 286 34.6
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 9.9e-26 121.7 266 37.6
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 3.0e-22 110.2 178 44.4
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 6.6e-22 109.0 229 39.3
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.6e-20 104.4 136 46.3
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 2.7e-15 87.0 64 76.6
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 4.3e-13 79.7 65 63.1


User provided reference genes

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