Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.3e-160 569.7 287 100.0
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 7.1e-79 298.1 293 59.0
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.2e-73 280.8 294 53.4
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 2.6e-73 279.6 296 52.7
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 7.6e-73 278.1 294 53.1
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 2.9e-72 276.2 262 55.7
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 3.8e-72 275.8 296 53.4
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 3.8e-72 275.8 257 56.4
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 1.1e-71 274.2 257 57.2
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 1.1e-71 274.2 295 53.6
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 2.5e-71 273.1 257 56.0
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 7.1e-71 271.6 257 56.4
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 2.1e-70 270.0 297 52.2
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 2.1e-70 270.0 257 56.8
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 2.7e-70 269.6 256 56.6
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.5e-70 269.2 295 51.2
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.5e-70 269.2 295 51.2
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 4.6e-70 268.9 294 51.0
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 4.6e-70 268.9 294 51.7
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 6.0e-70 268.5 297 49.8
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 6.0e-70 268.5 296 50.7
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 6.0e-70 268.5 262 53.1
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 7.9e-70 268.1 284 52.8
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 7.9e-70 268.1 288 52.4
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 7.9e-70 268.1 257 56.0
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 7.9e-70 268.1 284 52.8
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.0e-69 267.7 295 51.9
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.0e-69 267.7 263 53.6
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 1.3e-69 267.3 295 50.8
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.3e-69 267.3 295 50.8
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 2.3e-69 266.5 256 54.7
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 3.9e-69 265.8 256 54.7
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 3.9e-69 265.8 257 55.6
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 6.7e-69 265.0 300 52.0
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 8.7e-69 264.6 240 57.5
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.1e-68 264.2 297 51.2
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.5e-68 263.8 258 53.9
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 1.5e-68 263.8 292 51.4
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 1.9e-68 263.5 257 53.7
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 1.9e-68 263.5 258 53.5
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.9e-68 263.5 257 54.5
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 5.7e-68 261.9 294 48.3
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 9.7e-68 261.2 258 53.5
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 9.7e-68 261.2 256 55.1
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 9.7e-68 261.2 262 52.3
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 9.7e-68 261.2 255 54.1
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 9.7e-68 261.2 286 49.7
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.6e-67 260.4 262 52.7
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 2.2e-67 260.0 285 49.5
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 3.7e-67 259.2 255 53.7
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 3.7e-67 259.2 254 53.9
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 4.8e-67 258.8 254 54.7
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 8.2e-67 258.1 254 53.9
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.4e-66 257.3 257 53.3
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.4e-66 257.3 267 50.6
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 3.1e-66 256.1 293 49.1
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 9.0e-66 254.6 296 48.3
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.6e-65 253.1 289 48.8
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 5.9e-65 251.9 253 53.0
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 7.7e-65 251.5 259 51.0
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 1.0e-64 251.1 254 51.6
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.3e-64 250.8 255 52.2
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.7e-64 250.4 255 52.2
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.2e-64 250.0 258 52.7
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 2.2e-64 250.0 254 53.1
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 2.9e-64 249.6 257 50.2
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 3.8e-64 249.2 291 47.8
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 3.8e-64 249.2 254 52.0
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 8.5e-64 248.1 254 52.0
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 8.5e-64 248.1 254 52.4
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 8.5e-64 248.1 254 52.4
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 1.1e-63 247.7 253 52.6
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 1.1e-63 247.7 253 52.6
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 1.1e-63 247.7 253 52.6
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 1.4e-63 247.3 254 50.8
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 1.4e-63 247.3 253 52.6
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.9e-63 246.9 254 52.0
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 2.5e-63 246.5 254 51.2
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 4.2e-63 245.7 254 51.2
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 4.2e-63 245.7 254 52.0
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 7.2e-63 245.0 257 49.8
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 1.2e-62 244.2 254 50.8
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 2.7e-62 243.0 257 49.8
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 2.7e-62 243.0 300 52.3
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 3.6e-62 242.7 257 50.6
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 4.6e-62 242.3 255 52.2
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 4.6e-62 242.3 253 51.8
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.8e-61 240.4 256 50.4
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.8e-61 240.4 256 50.4
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.3e-61 240.0 255 50.6
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 3.9e-61 239.2 241 51.0
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 5.1e-61 238.8 257 49.4
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 8.8e-61 238.0 254 50.0
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 8.8e-61 238.0 254 50.0
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 8.8e-61 238.0 254 50.0
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 8.8e-61 238.0 255 52.5
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 8.8e-61 238.0 257 49.0
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.1e-60 237.7 254 49.6
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 2.0e-60 236.9 254 50.0
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 4.3e-60 235.7 255 49.8
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 4.3e-60 235.7 262 47.7
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 1.7e-59 233.8 253 49.4
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 3.7e-59 232.6 253 49.4
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.8e-59 232.3 296 45.6
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.4e-58 230.7 229 51.5
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 5.3e-58 228.8 256 48.4
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 5.3e-58 228.8 205 59.5
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 1.5e-57 227.3 254 48.8
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.5e-57 227.3 256 48.4
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 1.3e-56 224.2 317 46.1
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 1.2e-54 217.6 420 35.2
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 2.3e-53 213.4 231 48.1
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 8.8e-53 211.5 240 49.2
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 1.5e-52 210.7 257 46.3
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 1.7e-51 207.2 258 45.0
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 1.4e-50 204.1 236 48.7
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 2.4e-50 203.4 253 46.2
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.1e-50 202.6 259 44.4
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 1.5e-49 200.7 281 42.7
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.1e-47 194.5 212 47.2
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 4.2e-47 192.6 292 38.7
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.2e-46 191.0 237 44.7
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.5e-44 184.1 174 52.9
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.7e-43 180.6 173 54.3
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 7.0e-42 175.3 172 52.3
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 6.5e-40 168.7 252 40.9
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 2.4e-34 150.2 122 61.5
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 2.7e-33 146.7 140 56.4
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 2.9e-32 143.3 195 42.1
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 5.0e-32 142.5 210 37.1
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.2e-30 137.9 227 38.3
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.5e-28 131.0 139 52.5
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.1e-26 124.8 125 54.4
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.4e-26 123.6 186 38.2
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.5e-25 119.8 235 33.6
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.1e-18 98.2 107 45.8
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.7e-16 90.9 84 51.2
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.3e-16 90.5 229 28.8
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 5.8e-12 75.9 89 41.6
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.9e-11 73.6 66 54.5
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 4.9e-11 72.8 71 46.5
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 1.1e-10 71.6 72 44.4
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.2e-09 68.2 66 56.1
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.0e-09 67.4 108 41.7
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 3.3e-07 60.1 64 43.8
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.2e-06 58.2 177 27.1


User provided reference genes

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