Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 2.2e-274 948.3 488 100.0
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 6.0e-211 737.6 479 77.7
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 6.6e-210 734.2 494 77.7
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 2.6e-206 722.2 460 78.9
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 9.9e-206 720.3 492 74.4
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 3.8e-205 718.4 487 74.7
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 3.0e-202 708.8 423 83.5
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 1.2e-195 686.8 430 78.6
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 1.3e-192 676.8 498 70.3
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 4.8e-184 648.3 489 69.1
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 1.2e-182 643.7 469 69.7
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.7e-181 639.8 430 74.7
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 1.6e-179 633.3 465 67.5
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 5.1e-178 628.2 468 65.6
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 5.1e-178 628.2 415 73.3
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 6.7e-178 627.9 477 64.2
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 2.5e-177 625.9 418 73.7
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 9.6e-177 624.0 466 65.2
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 3.7e-176 622.1 417 73.1
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.8e-176 621.7 468 65.6
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 8.2e-176 620.9 411 72.5
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 8.2e-176 620.9 466 65.2
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 1.4e-175 620.2 430 70.9
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 1.8e-175 619.8 411 73.7
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 4.1e-175 618.6 467 67.5
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 1.2e-174 617.1 414 71.5
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 1.5e-174 616.7 415 72.5
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 1.5e-174 616.7 412 72.6
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 2.2e-173 612.8 416 71.6
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.9e-173 612.5 414 70.5
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 2.9e-173 612.5 414 72.2
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 1.1e-172 610.5 414 70.5
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.4e-172 610.1 414 72.0
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 3.2e-172 609.0 426 69.0
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 3.2e-172 609.0 414 70.3
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 9.3e-172 607.4 412 72.6
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 9.3e-172 607.4 419 70.6
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.1e-169 600.5 442 67.4
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 1.1e-169 600.5 416 70.7
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 2.5e-169 599.4 411 70.3
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 3.3e-169 599.0 475 63.2
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 2.4e-167 592.8 415 68.2
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 5.9e-166 588.2 394 72.1
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 1.4e-164 583.6 382 73.0
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 4.2e-164 582.0 411 69.1
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 3.6e-163 578.9 411 69.8
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 4.6e-163 578.6 411 67.6
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.4e-162 577.0 488 60.7
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 1.8e-162 576.6 455 63.1
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 2.3e-162 576.2 412 68.4
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 6.7e-162 574.7 423 68.3
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 1.5e-161 573.5 418 66.5
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 4.3e-161 572.0 446 65.5
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 2.2e-160 569.7 419 68.3
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 3.7e-160 568.9 418 65.3
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 1.4e-159 567.0 411 66.7
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 9.1e-159 564.3 419 65.6
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 9.1e-159 564.3 456 62.7
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 1.2e-158 563.9 516 59.9
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 5.9e-158 561.6 411 64.7
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 2.2e-157 559.7 411 65.5
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 4.2e-156 555.4 412 66.0
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 9.4e-156 554.3 418 66.7
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.2e-155 553.9 411 63.3
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.8e-154 547.7 414 65.9
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 1.5e-153 547.0 410 67.8
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 4.4e-153 545.4 415 64.1
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 7.4e-153 544.7 429 63.4
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 2.2e-152 543.1 455 60.4
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 6.3e-152 541.6 461 57.0
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 8.2e-152 541.2 428 63.8
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 3.1e-151 539.3 418 63.9
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 5.9e-150 535.0 408 66.4
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 5.0e-149 531.9 411 64.5
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.2e-148 529.3 445 61.3
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 4.2e-148 528.9 449 60.4
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 1.2e-147 527.3 362 71.0
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 2.1e-147 526.6 344 72.4
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 4.7e-147 525.4 411 64.7
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 4.8e-144 515.4 401 63.3
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.8e-144 515.4 468 59.8
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 7.0e-143 511.5 549 51.4
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 1.9e-140 503.4 396 61.9
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.7e-139 498.8 412 61.7
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.0e-139 498.0 446 59.0
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.3e-138 496.5 344 68.6
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 4.0e-138 495.7 411 58.4
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 3.5e-134 482.6 382 61.0
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 2.9e-133 479.6 370 61.6
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 4.4e-129 465.7 411 55.0
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 7.5e-129 464.9 409 57.2
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 3.8e-125 452.6 311 71.4
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 8.6e-125 451.4 324 67.9
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 7.3e-124 448.4 428 54.4
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 1.4e-119 434.1 418 55.3
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 7.8e-118 428.3 415 55.9
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 3.7e-112 409.5 446 47.3
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 6.2e-107 392.1 311 62.4
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 2.4e-103 380.2 416 48.1
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 5.6e-100 369.0 299 64.5
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 4.2e-87 326.2 224 70.1
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 9.6e-84 315.1 263 65.4
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 3.5e-78 296.6 187 73.8
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 1.0e-77 295.0 254 55.9
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 2.6e-73 280.4 188 71.3
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.0e-65 254.2 229 58.1
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 5.1e-61 239.6 206 64.6
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 1.2e-57 228.4 300 44.7
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 8.5e-48 195.7 169 58.0
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 9.7e-44 182.2 260 40.0
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 3.3e-36 157.1 96 75.0
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.3e-35 155.2 150 49.3
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 8.2e-35 152.5 97 72.2
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 1.4e-34 151.8 115 59.1
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 2.4e-34 151.0 121 57.9
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.1e-31 142.1 87 69.0
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 1.0e-29 135.6 236 36.4
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 8.8e-29 132.5 134 52.2
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 3.3e-28 130.6 111 56.8
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 1.8e-26 124.8 276 35.9
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 1.3e-24 118.6 445 27.0
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 2.5e-23 114.4 103 54.4
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 7.5e-20 102.8 96 52.1
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 8.3e-19 99.4 223 32.3
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 2.3e-16 91.3 128 40.6
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 2.8e-14 84.3 109 43.1
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 6.1e-14 83.2 293 25.3
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.3e-13 81.3 53 69.8
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 3.4e-12 77.4 48 75.0
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 3.7e-11 73.9 63 50.8
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 4.9e-11 73.6 476 24.4
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 3.1e-10 70.9 56 53.6
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 9.2e-10 69.3 40 77.5
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 1.6e-09 68.6 49 67.3
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.2e-06 58.9 39 66.7
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 4.7e-06 57.0 31 77.4


User provided reference genes

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