Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 2238.8 1171 100.0
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1816.2 1173 80.2
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1810.8 1173 79.5
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1807.0 1176 80.1
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1784.2 1173 80.2
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1763.4 1173 78.0
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1763.0 1177 77.7
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1676.8 1174 75.2
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1675.6 1174 74.8
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1645.6 1220 72.8
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1590.5 1200 72.2
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1390.6 1178 64.8
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1389.8 1168 63.8
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1371.3 1177 63.7
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1370.1 1169 62.7
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1369.4 1169 63.8
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1364.7 1173 63.3
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1364.4 1183 63.2
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1364.0 1168 64.0
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1360.1 1176 60.5
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1359.4 1155 61.9
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1339.7 1158 62.4
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1339.3 1182 61.8
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1337.4 1154 61.4
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1317.8 1140 61.0
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1314.3 1035 63.5
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1309.7 1166 62.1
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1308.9 1172 60.0
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1305.0 1175 60.3
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1299.3 1166 60.6
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1297.3 1176 59.7
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1289.6 1167 58.7
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1285.0 1224 55.3
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1283.1 1173 59.0
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1275.0 1174 58.7
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1273.5 1037 62.5
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1270.0 1153 58.4
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1269.6 1154 58.7
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1269.2 1179 59.2
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1267.7 1172 58.8
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1266.5 1161 58.1
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1263.1 1155 59.1
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1234.2 1125 58.9
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1231.5 1346 53.7
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1230.3 1185 56.7
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1226.5 1185 56.8
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1219.9 1172 57.3
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1214.1 1169 56.9
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1208.7 1161 56.2
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1200.3 1233 54.3
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1199.5 1637 45.8
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1189.5 1163 55.2
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1183.7 1159 56.0
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1183.7 1162 55.9
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1176.8 842 75.8
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1167.1 1178 55.2
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1166.8 1134 55.7
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1163.3 1170 55.4
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1157.1 1154 53.8
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1148.3 1159 55.7
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1147.9 1162 52.7
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1145.2 946 61.6
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1143.6 1166 54.9
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1140.6 1087 58.5
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1136.3 1177 52.5
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1134.8 1168 53.5
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1126.7 1151 53.6
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1125.5 1179 53.7
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1121.7 1164 54.0
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1119.4 1194 53.0
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1117.4 1160 52.3
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1117.4 1160 52.3
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1114.8 1151 52.5
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1107.8 1185 51.9
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1105.9 1140 53.5
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1105.9 1141 52.9
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1101.3 1151 51.7
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1089.3 1000 56.6
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1076.6 1136 53.0
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 2.7e-310 1068.9 1115 53.2
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 1.1e-303 1047.0 1166 50.1
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 2.7e-302 1042.3 1032 51.8
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 5.0e-296 1021.5 1076 53.4
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.6e-292 1009.2 661 78.4
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 4.4e-292 1008.4 653 78.9
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 4.4e-292 1008.4 1170 48.2
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 9.1e-290 1000.7 633 78.5
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 5.3e-282 974.9 1243 45.9
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 2.1e-278 963.0 1154 47.8
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 1.9e-271 939.9 989 53.3
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 4.9e-259 898.7 1155 45.5
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 4.3e-239 832.4 716 57.0
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 3.6e-238 829.3 1181 42.3
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 1.3e-235 820.8 729 57.6
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 1.6e-225 787.3 1045 44.0
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 2.2e-195 687.2 1056 40.3
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.1e-186 658.3 960 39.4
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 3.6e-185 653.3 776 48.1
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 5.7e-183 646.0 1030 36.3
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.2e-182 644.0 670 52.2
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 6.7e-176 622.5 1078 36.5
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 7.2e-170 602.4 1063 36.2
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 7.5e-159 565.8 491 60.1
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 1.3e-142 511.9 1229 30.8
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 4.0e-104 384.0 431 50.6
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 8.7e-99 366.3 415 54.0
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.6e-63 248.4 275 45.1
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.4e-59 236.1 178 62.9
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 2.0e-39 169.1 116 66.4
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 4.7e-28 131.3 166 44.6
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 1.8e-27 129.4 107 58.9
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 1.2e-23 116.7 314 28.3
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 2.1e-20 105.9 81 64.2
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 6.0e-15 87.8 61 70.5
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 1.1e-13 83.6 76 56.6
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 1.1e-11 77.0 85 47.1
Medtr6g074780 Medicago truncatula HOM05D000005 ORTHO05D000012 9.9e-10 70.5 37 83.8
Medtr6g074160 Medicago truncatula HOM05D006302 ORTHO05D007960 2.2e-09 69.3 41 73.2
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 1.1e-08 67.0 47 63.8
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 5.4e-08 64.7 71 47.9
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.6e-07 63.2 40 70.0
Medtr6g478020 Medicago truncatula HOM05D000005 ORTHO05D000012 6.0e-07 61.2 42 66.7
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 1.7e-06 59.7 37 70.3
Medtr6g472240 Medicago truncatula HOM05D006302 ORTHO05D261209 3.0e-06 58.9 69 49.3
Medtr6g074790 Medicago truncatula HOM05D006302 ORTHO05D007960 3.9e-06 58.5 43 69.8
Lsat_1_v5_gn_0_32400 Lactuca sativa HOM05D002303 ORTHO05D004329 8.6e-06 57.4 98 38.8


User provided reference genes

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