Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 4.4e-250 867.8 555 100.0
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 8.5e-137 491.5 560 67.9
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 3.0e-126 456.4 572 66.3
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 7.5e-125 451.8 568 63.4
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 1.6e-119 434.1 577 57.9
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 3.3e-112 409.8 568 63.4
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 4.2e-112 409.5 554 61.7
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 5.7e-109 399.1 558 61.6
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 4.3e-104 382.9 556 60.8
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 4.3e-104 382.9 554 60.6
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 9.8e-93 345.1 463 61.6
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 4.9e-92 342.8 586 51.9
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.2e-90 338.2 596 52.9
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 1.6e-90 337.8 534 58.8
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 2.7e-90 337.0 452 61.7
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 2.7e-90 337.0 559 58.0
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.3e-89 334.7 520 60.0
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 8.6e-89 332.0 503 41.7
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.1e-88 331.6 563 55.4
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 4.3e-88 329.7 574 55.6
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 9.5e-88 328.6 520 56.9
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 1.2e-87 328.2 484 58.1
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 2.8e-87 327.0 522 59.8
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 3.1e-86 323.6 575 55.0
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 1.2e-85 321.6 492 59.6
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 1.5e-85 321.2 456 58.3
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 4.4e-85 319.7 455 64.2
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 5.8e-85 319.3 581 56.1
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 1.7e-84 317.8 454 63.2
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 8.3e-84 315.5 486 57.4
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 7.1e-83 312.4 322 53.4
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 9.2e-83 312.0 491 56.4
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 6.0e-82 309.3 480 57.9
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 7.8e-82 308.9 457 60.8
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 2.3e-81 307.4 599 49.6
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 1.1e-80 305.1 563 53.1
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 1.1e-80 305.1 480 60.4
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 3.3e-80 303.5 315 52.1
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 7.3e-80 302.4 494 55.3
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.2e-79 301.6 557 51.2
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 1.2e-79 301.6 578 51.2
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 6.2e-79 299.3 469 60.8
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 5.2e-78 296.2 307 53.7
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 3.4e-77 293.5 588 49.0
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 4.4e-77 293.1 453 57.8
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.1e-75 288.5 527 52.4
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 2.4e-75 287.3 453 57.4
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 2.4e-75 287.3 572 53.1
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 7.1e-75 285.8 336 46.7
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 7.1e-75 285.8 482 55.4
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 2.1e-74 284.3 590 50.2
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 3.5e-74 283.5 565 52.6
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.0e-73 282.0 441 42.2
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.0e-73 282.0 441 42.2
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 2.3e-73 280.8 565 52.4
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 2.3e-73 280.8 470 55.5
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 5.1e-73 279.6 574 48.3
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.9e-72 277.7 482 58.1
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 5.6e-72 276.2 451 56.1
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 1.6e-71 274.6 533 51.0
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 2.1e-71 274.2 533 51.6
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 2.8e-71 273.9 452 52.9
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 3.6e-71 273.5 500 52.8
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 1.1e-70 271.9 533 51.8
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 5.3e-70 269.6 512 54.3
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 6.9e-70 269.2 304 48.7
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 6.9e-70 269.2 474 36.5
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 9.9e-69 265.4 549 50.5
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.9e-68 263.8 456 56.4
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 1.9e-67 261.2 597 46.6
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 9.3e-67 258.8 390 41.3
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 9.3e-67 258.8 531 50.5
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 1.2e-66 258.5 577 48.9
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 1.7e-65 254.6 330 44.2
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 3.0e-65 253.8 464 55.6
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 3.9e-65 253.4 570 47.2
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 3.3e-64 250.4 540 50.2
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.3e-63 248.4 472 52.5
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.3e-63 248.4 568 49.3
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 2.8e-63 247.3 502 51.2
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 3.6e-63 246.9 454 56.6
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 1.8e-62 244.6 509 54.2
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 2.6e-61 240.7 528 45.1
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 9.9e-61 238.8 594 46.6
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 2.9e-60 237.3 418 35.6
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 6.4e-60 236.1 418 35.6
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 8.4e-60 235.7 480 53.5
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 3.2e-59 233.8 477 55.8
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 7.1e-59 232.6 490 53.1
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 1.2e-58 231.9 470 54.0
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 2.1e-58 231.1 478 54.2
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 1.8e-57 228.0 571 48.3
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 5.1e-57 226.5 480 53.5
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 6.7e-57 226.1 489 52.8
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 1.9e-56 224.6 476 54.0
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 7.4e-56 222.6 581 47.2
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 1.6e-55 221.5 581 47.2
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 3.7e-55 220.3 297 42.1
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 2.0e-53 214.5 451 55.0
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 1.2e-50 205.3 571 48.5
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 8.2e-47 192.6 402 35.8
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 8.2e-47 192.6 402 35.8
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 1.8e-46 191.4 404 34.9
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 1.8e-46 191.4 497 45.1
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 4.9e-44 183.3 438 50.7
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.1e-40 172.2 273 37.4
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.7e-40 169.9 542 28.2
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 3.4e-37 160.6 318 35.5
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.3e-36 158.7 276 39.5
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 2.5e-35 154.5 260 36.5
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 7.2e-35 152.9 430 44.9
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 9.4e-35 152.5 285 39.6
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 3.0e-33 147.5 281 37.4
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 5.7e-32 143.3 345 29.9
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 1.7e-31 141.7 276 35.9
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 1.7e-31 141.7 276 35.9
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 6.9e-30 136.3 254 37.4
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.2e-27 127.5 351 29.3
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 2.6e-24 117.9 199 40.7
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 8.2e-23 112.8 194 39.2
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 2.1e-18 98.2 201 35.3
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 3.3e-16 90.9 72 58.3
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 7.0e-14 83.2 157 40.1
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.6e-13 81.3 352 22.7
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 3.5e-13 80.9 134 38.8
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 1.5e-11 75.5 46 73.9
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 3.6e-10 70.9 114 38.6
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 8.0e-10 69.7 45 71.1
Medtr3g108743 Medicago truncatula HOM05D030372 ORTHO05D025854 8.0e-10 69.7 53 62.3
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 1.8e-09 68.6 68 48.5
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 1.2e-08 65.9 43 72.1
Medtr8g080260 Medicago truncatula HOM05D004670 ORTHO05D014137 6.3e-07 60.1 113 39.8
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 8.3e-07 59.7 41 68.3
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 1.1e-06 59.3 46 67.4
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 1.4e-06 58.9 194 29.9
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.4e-06 58.9 192 23.4
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.4e-06 58.9 211 22.3
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 3.1e-06 57.8 192 25.5
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 7.0e-06 56.6 192 25.5
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 7.0e-06 56.6 192 25.5
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 7.0e-06 56.6 173 26.0


User provided reference genes

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