Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 5.4e-66 254.2 131 100.0
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 9.0e-13 77.4 79 57.0
Lj1g0014156 Lotus japonicus HOM05D001177 ORTHO05D007091 2.6e-12 75.9 45 86.7
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 3.4e-12 75.5 79 53.2
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 4.5e-12 75.1 79 51.9
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 2.2e-11 72.8 79 51.9
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 6.5e-11 71.2 79 50.6
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 6.5e-11 71.2 79 50.6
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 3.2e-10 68.9 79 50.6
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 5.5e-10 68.2 79 48.1
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 9.3e-10 67.4 79 50.6
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 9.3e-10 67.4 79 49.4
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 9.3e-10 67.4 79 49.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 9.3e-10 67.4 79 44.3
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 2.7e-09 65.9 79 45.6
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 3.5e-09 65.5 80 46.2
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 3.5e-09 65.5 80 46.2
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 3.5e-09 65.5 80 46.2
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 4.6e-09 65.1 80 46.2
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 4.6e-09 65.1 73 47.9
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 4.6e-09 65.1 73 49.3
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 6.1e-09 64.7 73 49.3
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 6.1e-09 64.7 92 44.6
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 7.9e-09 64.3 75 48.0
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 1.0e-08 63.9 79 46.8
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 1.0e-08 63.9 79 45.6
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 1.0e-08 63.9 73 46.6
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 1.0e-08 63.9 79 46.8
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 1.3e-08 63.5 79 41.8
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 1.3e-08 63.5 79 44.3
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 1.3e-08 63.5 79 44.3
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 1.3e-08 63.5 79 44.3
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 1.3e-08 63.5 79 44.3
arahy.Tifrunner.gnm1.ann1.Q0SVNI Arachis hypogaea HOM05D001177 ORTHO05D007091 1.8e-08 63.2 44 72.7
arahy.Tifrunner.gnm1.ann1.R689L2 Arachis hypogaea HOM05D001177 ORTHO05D007091 1.8e-08 63.2 44 72.7
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 1.8e-08 63.2 73 45.2
Glyma.16G063400 Glycine max HOM05D001177 ORTHO05D007091 1.8e-08 63.2 49 71.4
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 1.8e-08 63.2 79 43.0
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 1.8e-08 63.2 79 43.0
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 1.8e-08 63.2 80 43.8
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 2.3e-08 62.8 79 43.0
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 2.3e-08 62.8 73 46.6
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 2.3e-08 62.8 75 46.7
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 2.3e-08 62.8 79 46.8
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 2.3e-08 62.8 79 45.6
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 2.3e-08 62.8 73 49.3
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 3.0e-08 62.4 73 46.6
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 3.0e-08 62.4 73 46.6
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 3.0e-08 62.4 73 46.6
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 3.0e-08 62.4 73 45.2
Ciclev10017544m.g Citrus clementina HOM05D001177 ORTHO05D001507 3.9e-08 62.0 40 82.5
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 3.9e-08 62.0 79 44.3
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 3.9e-08 62.0 79 45.6
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 3.9e-08 62.0 79 44.3
RcHm_v2.0_Chr2g0174111 Rosa chinensis HOM05D001177 ORTHO05D007091 3.9e-08 62.0 41 73.2
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 3.9e-08 62.0 73 46.6
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 5.1e-08 61.6 73 43.8
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 5.1e-08 61.6 75 45.3
Lalb_Chr14g0363031 Lupinus albus HOM05D001177 ORTHO05D007091 5.1e-08 61.6 53 60.4
TPR.G9071 Trifolium pratense HOM05D001177 ORTHO05D007091 5.1e-08 61.6 33 87.9
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 5.1e-08 61.6 79 41.8
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 6.7e-08 61.2 73 43.8
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 6.7e-08 61.2 73 43.8
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 6.7e-08 61.2 79 41.8
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 6.7e-08 61.2 79 41.8
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 6.7e-08 61.2 79 41.8
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 6.7e-08 61.2 73 43.8
FvH4_6g52470 Fragaria vesca HOM05D001177 ORTHO05D007091 6.7e-08 61.2 43 74.4
FAN02G2178 Fragaria x ananassa HOM05D001177 ORTHO05D007091 6.7e-08 61.2 43 74.4
FAN14G2882 Fragaria x ananassa HOM05D001177 ORTHO05D007091 6.7e-08 61.2 43 74.4
Gohir.D09G032700 Gossypium hirsutum HOM05D001177 ORTHO05D007091 6.7e-08 61.2 43 72.1
Gorai.006G037700 Gossypium raimondii HOM05D001177 ORTHO05D007091 6.7e-08 61.2 43 72.1
Nitab4.5_0001031g0080 Nicotiana tabacum HOM05D001177 ORTHO05D007091 6.7e-08 61.2 53 56.6
Psat3g169040 Pisum sativum HOM05D001177 ORTHO05D007091 6.7e-08 61.2 43 72.1
Aqoxy5G03563 Aquilegia oxysepala HOM05D001177 ORTHO05D007091 8.7e-08 60.8 42 71.4
CDE04G1204 Ceratophyllum demersum HOM05D001177 ORTHO05D007091 8.7e-08 60.8 39 74.4
FAN05G3425 Fragaria x ananassa HOM05D001177 ORTHO05D007091 8.7e-08 60.8 43 74.4
Glyma.19G082000 Glycine max HOM05D001177 ORTHO05D007091 8.7e-08 60.8 49 69.4
Gohir.A09G032700 Gossypium hirsutum HOM05D001177 ORTHO05D007091 8.7e-08 60.8 43 72.1
Nitab4.5_0001863g0200 Nicotiana tabacum HOM05D001177 ORTHO05D007091 8.7e-08 60.8 53 56.6
Oeu048591.1 Olea europaea HOM05D001177 ORTHO05D007091 8.7e-08 60.8 52 59.6
vmacro05919 Vaccinium macrocarpon HOM05D001177 ORTHO05D007091 8.7e-08 60.8 41 70.7
HanXRQChr09g0255621 Helianthus annuus HOM05D001177 ORTHO05D007091 1.1e-07 60.5 50 66.0
Medtr7g035445 Medicago truncatula HOM05D001177 ORTHO05D007091 1.1e-07 60.5 33 84.8
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 1.1e-07 60.5 79 41.8
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 1.5e-07 60.1 79 45.6
EL10Ac6g13445 Beta vulgaris HOM05D001177 ORTHO05D007091 1.5e-07 60.1 35 77.1
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 1.5e-07 60.1 79 40.5
Cfa007285 Carpinus fangiana HOM05D001177 ORTHO05D007091 1.5e-07 60.1 43 74.4
CiPaw.04G032700 Carya illinoinensis HOM05D001177 ORTHO05D007091 1.5e-07 60.1 32 90.6
Duzib147G1186 Durio zibethinus HOM05D001177 ORTHO05D007091 1.5e-07 60.1 32 90.6
FAN09G0779 Fragaria x ananassa HOM05D001177 ORTHO05D007091 1.5e-07 60.1 43 72.1
FAN09G4850 Fragaria x ananassa HOM05D001177 ORTHO05D007091 1.5e-07 60.1 43 72.1
Nitab4.5_0001544g0160 Nicotiana tabacum HOM05D001177 ORTHO05D007091 1.5e-07 60.1 54 64.8
Prupe.3G299100 Prunus persica HOM05D001177 ORTHO05D001507 1.5e-07 60.1 42 76.2
Thecc.04G027000 Theobroma cacao HOM05D001177 ORTHO05D007091 1.5e-07 60.1 35 82.9
GSVIVG01003965001 Vitis vinifera HOM05D001177 ORTHO05D001507 1.5e-07 60.1 42 69.0
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 1.9e-07 59.7 73 43.8
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 1.9e-07 59.7 73 43.8
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 1.9e-07 59.7 73 43.8
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 1.9e-07 59.7 73 43.8
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 1.9e-07 59.7 73 42.5
Lju41A46T90 Lonicera japonica HOM05D001177 ORTHO05D007091 1.9e-07 59.7 39 69.2
MD17G1018600 Malus domestica HOM05D001177 ORTHO05D007091 1.9e-07 59.7 42 66.7
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 1.9e-07 59.7 73 45.2
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 1.9e-07 59.7 73 43.8
Ah.02g130620 Amaranthus hybridus HOM05D001177 ORTHO05D007091 2.5e-07 59.3 60 53.3
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 2.5e-07 59.3 79 41.8
Cc08_g11710 Coffea canephora HOM05D001177 ORTHO05D007091 2.5e-07 59.3 42 66.7
MD09G1017800 Malus domestica HOM05D001177 ORTHO05D007091 2.5e-07 59.3 42 66.7
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 2.5e-07 59.3 72 47.2
Rhsim10G0011600 Rhododendron simsii HOM05D001177 ORTHO05D007091 2.5e-07 59.3 40 77.5
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 3.3e-07 58.9 79 43.0
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 3.3e-07 58.9 79 43.0
TWI12G0650 Tripterygium wilfordii HOM05D001177 ORTHO05D007091 3.3e-07 58.9 52 59.6
unitig_21.g20485 Utricularia gibba HOM05D001177 ORTHO05D007091 3.3e-07 58.9 46 67.4
Aa31LG2G5370 Aethionema arabicum HOM05D001177 ORTHO05D001507 4.3e-07 58.5 53 60.4
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 4.3e-07 58.5 79 44.3
Haze_14808 Corylus avellana HOM05D001177 ORTHO05D007091 4.3e-07 58.5 43 72.1
Phvul.008G148200 Phaseolus vulgaris HOM05D001177 ORTHO05D007091 4.3e-07 58.5 45 66.7
QL02p073037 Quercus lobata HOM05D001177 ORTHO05D007091 4.3e-07 58.5 40 77.5
QL02p073106 Quercus lobata HOM05D001177 ORTHO05D007091 4.3e-07 58.5 40 77.5
Atru.chr6.2479 Acer truncatum HOM05D001177 ORTHO05D007091 5.7e-07 58.2 41 70.7
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 5.7e-07 58.2 79 45.6
ECA232G2553 Erigeron canadensis HOM05D001177 ORTHO05D007091 5.7e-07 58.2 31 83.9
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 5.7e-07 58.2 72 45.8
Nn4g22453 Nelumbo nucifera HOM05D001177 ORTHO05D007091 5.7e-07 58.2 55 63.6
Os12g0267900 Oryza sativa ssp. japonica HOM05D001177 ORTHO05D007091 5.7e-07 58.2 51 54.9
Sed0019906 Sechium edule HOM05D001177 ORTHO05D007091 5.7e-07 58.2 42 69.0
PGSC0003DMG400020230 Solanum tuberosum HOM05D001177 ORTHO05D007091 5.7e-07 58.2 53 56.6
ClCG05G013200 Citrullus lanatus HOM05D001177 ORTHO05D007091 7.4e-07 57.8 41 75.6
Migut.H00054 Erythranthe guttata HOM05D001177 ORTHO05D007091 7.4e-07 57.8 51 58.8
PGSC0003DMG400006969 Solanum tuberosum HOM05D001177 ORTHO05D007091 7.4e-07 57.8 53 54.7
Thecc.04G025000 Theobroma cacao HOM05D001177 ORTHO05D007091 7.4e-07 57.8 43 69.8
TAR371G1081 Trochodendron aralioides HOM05D001177 ORTHO05D007091 7.4e-07 57.8 42 64.3
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 9.7e-07 57.4 79 41.8
Ca_06569_v3 Cicer arietinum L. HOM05D001177 ORTHO05D007091 9.7e-07 57.4 34 76.5
COL.COLO4_29271 Corchorus olitorius HOM05D001177 ORTHO05D007091 9.7e-07 57.4 52 63.5
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 9.7e-07 57.4 72 43.1
Solyc02g093760.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 9.7e-07 57.4 42 66.7
CSS0005984 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D007091 1.3e-06 57.0 41 68.3
CSS0031107 Camellia sinensis var. sinensis HOM05D001177 ORTHO05D007091 1.3e-06 57.0 41 68.3
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 1.3e-06 57.0 69 43.5
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 1.3e-06 57.0 79 41.8
MBI11_g40895_MAGBIO Magnolia biondii HOM05D001177 ORTHO05D007091 1.3e-06 57.0 53 60.4
Sopen02g017100 Solanum pennellii HOM05D001177 ORTHO05D007091 1.3e-06 57.0 40 75.0
Sopen02g038400 Solanum pennellii HOM05D001177 ORTHO05D007091 1.3e-06 57.0 52 55.8
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 1.3e-06 57.0 85 42.4
CANSAT64G1259 Cannabis sativa HOM05D001177 ORTHO05D007091 1.6e-06 56.6 41 68.3
DCAR_002963 Daucus carota HOM05D001177 ORTHO05D007091 1.6e-06 56.6 51 58.8
Dinv00599 Davidia involucrata HOM05D001177 ORTHO05D007091 1.6e-06 56.6 41 65.9
Solyc02g067970.4 Solanum lycopersicum HOM05D001177 ORTHO05D007091 1.6e-06 56.6 53 54.7
TAR446G0002 Trochodendron aralioides HOM05D001177 ORTHO05D007091 1.6e-06 56.6 32 84.4
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 1.6e-06 56.6 79 41.8
Actinidia36159 Actinidia chinensis HOM05D001177 ORTHO05D007091 2.2e-06 56.2 30 86.7
CDE07G0753 Ceratophyllum demersum HOM05D001177 ORTHO05D007091 2.2e-06 56.2 39 69.2
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 2.2e-06 56.2 79 39.2
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 2.2e-06 56.2 79 39.2
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 2.2e-06 56.2 79 39.2
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 2.2e-06 56.2 79 43.0
Hund24909 Selenicereus undatus HOM05D001177 ORTHO05D007091 2.2e-06 56.2 53 50.9
CsaV3_3G027350 Cucumis sativus L. HOM05D001177 ORTHO05D007091 2.8e-06 55.8 41 73.2
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 2.8e-06 55.8 73 46.6
Manes.01G014100 Manihot esculenta HOM05D001177 ORTHO05D007091 2.8e-06 55.8 52 57.7
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 2.8e-06 55.8 79 38.0
Nn3g16573 Nelumbo nucifera HOM05D001177 ORTHO05D007091 2.8e-06 55.8 53 58.5
Sc03g0007010 Simmondsia chinensis HOM05D001177 ORTHO05D007091 2.8e-06 55.8 52 55.8
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 2.8e-06 55.8 72 44.4
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 3.7e-06 55.5 78 43.6
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 3.7e-06 55.5 74 41.9
Eucgr.I01697 Eucalyptus grandis HOM05D001177 ORTHO05D001507 3.7e-06 55.5 34 73.5
Nitab4.5_0005414g0040 Nicotiana tabacum HOM05D001177 ORTHO05D007091 3.7e-06 55.5 51 51.0
SHI03853 Sapria himalayana HOM05D001177 ORTHO05D007091 3.7e-06 55.5 60 55.0
Gohir.D11G069600 Gossypium hirsutum HOM05D001177 ORTHO05D007091 4.8e-06 55.1 41 75.6
Gorai.007G074400 Gossypium raimondii HOM05D001177 ORTHO05D007091 4.8e-06 55.1 41 75.6
PSO017G0460 Papaver somniferum HOM05D001177 ORTHO05D007091 4.8e-06 55.1 56 55.4
PSO384G2778 Papaver somniferum HOM05D001177 ORTHO05D007091 4.8e-06 55.1 54 59.3
Peaxi162Scf00420g00254 Petunia axillaris HOM05D001177 ORTHO05D007091 4.8e-06 55.1 52 51.9
Potri.001G336832 Populus trichocarpa HOM05D001177 ORTHO05D007091 4.8e-06 55.1 53 54.7
Cpa.g.sc1097.2 Carica papaya HOM05D001177 ORTHO05D007091 6.3e-06 54.7 36 69.4
ECA232G2835 Erigeron canadensis HOM05D003414 ORTHO05D003913 6.3e-06 54.7 51 58.8
Zm00001eb111820 Zea mays HOM05D001177 ORTHO05D007091 6.3e-06 54.7 41 63.4
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 8.2e-06 54.3 79 40.5
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 8.2e-06 54.3 79 41.8
MELO3C014848.2 Cucumis melo HOM05D001177 ORTHO05D007091 8.2e-06 54.3 41 70.7


User provided reference genes

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