Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 6.5e-84 313.9 148 100.0
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 3.0e-65 251.9 147 82.3
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.3e-63 244.2 153 73.9
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 6.3e-63 244.2 153 73.9
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.4e-62 243.0 142 80.3
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.4e-62 243.0 142 80.3
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.4e-62 243.0 149 79.9
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.7e-60 236.1 153 72.5
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.8e-57 226.1 151 69.5
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 2.3e-57 225.7 137 80.3
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 5.2e-57 224.6 144 76.4
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 6.7e-57 224.2 139 77.0
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.2e-56 223.4 144 73.6
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.6e-56 222.2 140 74.3
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 3.3e-56 221.9 144 72.2
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 4.4e-56 221.5 147 68.7
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 7.5e-56 220.7 153 69.3
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 1.7e-55 219.5 142 73.9
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 2.8e-55 218.8 146 70.5
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 3.7e-55 218.4 137 74.5
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 8.2e-55 217.2 140 72.1
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.8e-54 216.1 140 72.1
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.8e-54 216.1 137 76.6
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 2.4e-54 215.7 139 73.4
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 3.1e-54 215.3 142 70.4
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 4.1e-54 214.9 142 69.7
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 4.1e-54 214.9 139 75.5
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 9.1e-54 213.8 143 72.0
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 1.6e-53 213.0 135 77.8
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.6e-53 213.0 140 70.7
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 5.9e-53 211.1 139 74.8
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 7.7e-53 210.7 152 67.8
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.0e-52 210.3 136 73.5
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.0e-52 210.3 139 70.5
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 1.0e-52 210.3 139 70.5
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.3e-52 209.9 151 70.2
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 1.7e-52 209.5 139 70.5
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.7e-52 209.5 139 71.2
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-52 209.1 139 70.5
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.8e-52 208.4 139 69.8
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 3.8e-52 208.4 146 68.5
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 6.5e-52 207.6 137 74.5
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.1e-51 206.8 138 70.3
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.1e-51 206.8 137 74.5
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.9e-51 206.1 144 70.1
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 3.2e-51 205.3 152 65.1
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 4.2e-51 204.9 136 69.9
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 5.5e-51 204.5 139 69.8
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.2e-50 203.4 137 73.7
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 1.2e-50 203.4 139 71.9
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 1.2e-50 203.4 137 71.5
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.1e-50 202.6 144 68.1
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 4.7e-50 201.4 139 70.5
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 8.0e-50 200.7 140 70.7
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 1.0e-49 200.3 140 67.1
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.8e-49 199.5 140 70.0
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.8e-49 199.5 139 67.6
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.8e-49 199.5 139 71.2
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 2.3e-49 199.1 148 65.5
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 2.3e-49 199.1 139 66.2
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 3.0e-49 198.7 140 70.0
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 3.0e-49 198.7 147 63.9
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 3.0e-49 198.7 138 68.1
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 4.0e-49 198.4 140 70.0
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 5.2e-49 198.0 137 71.5
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.2e-48 196.8 146 66.4
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.2e-48 196.8 137 70.1
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.5e-48 196.4 140 70.0
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.5e-48 196.4 139 69.1
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 2.6e-48 195.7 139 67.6
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 2.6e-48 195.7 145 61.4
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 4.4e-48 194.9 143 67.1
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 7.5e-48 194.1 145 60.7
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 7.5e-48 194.1 139 68.3
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 9.8e-48 193.7 140 64.3
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 9.8e-48 193.7 139 69.1
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-47 193.4 136 67.6
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.8e-47 192.2 136 69.1
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.8e-47 192.2 136 69.1
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 4.8e-47 191.4 146 63.0
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.3e-47 191.0 139 63.3
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.3e-47 191.0 139 63.3
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 6.3e-47 191.0 140 62.9
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 8.3e-47 190.7 137 68.6
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-46 190.3 139 64.0
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 1.1e-46 190.3 135 67.4
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.4e-46 189.9 139 67.6
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.8e-46 189.5 138 65.9
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 2.4e-46 189.1 136 66.9
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 2.4e-46 189.1 136 66.9
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 2.4e-46 189.1 136 66.9
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 3.1e-46 188.7 130 68.5
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 4.1e-46 188.3 137 65.0
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 7.0e-46 187.6 145 61.4
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.0e-46 187.6 145 61.4
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 9.1e-46 187.2 130 66.9
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 9.1e-46 187.2 137 65.0
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.6e-45 186.4 179 55.3
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 1.6e-45 186.4 136 65.4
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 2.0e-45 186.0 139 66.9
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 2.7e-45 185.7 136 66.9
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 4.5e-45 184.9 140 59.3
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.5e-45 184.9 139 63.3
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 1.3e-44 183.3 141 61.7
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 8.6e-44 180.6 135 63.7
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.6e-44 180.6 135 63.7
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.1e-43 180.3 131 63.4
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 2.5e-43 179.1 140 64.3
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.5e-43 179.1 140 63.6
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.3e-43 178.7 140 60.7
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 4.2e-43 178.3 138 64.5
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.5e-43 177.9 140 57.1
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.5e-43 177.9 140 60.7
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 9.5e-43 177.2 140 60.7
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 9.5e-43 177.2 149 57.0
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 1.6e-42 176.4 138 60.9
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.7e-42 174.9 142 55.6
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.0e-41 173.7 136 64.0
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.0e-41 173.7 139 62.6
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.4e-41 173.3 141 60.3
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.8e-41 172.9 141 56.0
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.8e-41 172.9 141 56.0
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 5.2e-41 171.4 141 58.9
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 6.8e-41 171.0 147 58.5
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 6.8e-41 171.0 138 59.4
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 1.5e-40 169.9 144 56.9
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 9.8e-40 167.2 137 59.9
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 1.3e-39 166.8 131 61.1
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.4e-38 163.3 142 57.0
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.8e-38 162.9 140 57.9
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 5.4e-38 161.4 140 54.3
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 9.2e-38 160.6 138 53.6
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.2e-37 160.2 139 55.4
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.6e-37 159.8 136 52.9
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.7e-36 156.4 138 52.2
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 5.0e-36 154.8 139 59.0
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 6.6e-36 154.5 134 56.0
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 2.5e-35 152.5 114 70.2
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.3e-35 151.8 203 42.9
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 4.3e-35 151.8 136 58.1
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 9.5e-35 150.6 144 47.9
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 2.1e-34 149.4 138 50.0
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 2.1e-34 149.4 100 70.0
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 3.6e-34 148.7 115 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 2.3e-33 146.0 140 48.6
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.8e-33 144.4 140 52.1
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.7e-31 139.8 138 47.8
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 1.6e-29 133.3 140 47.9
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 2.7e-29 132.5 136 47.8
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.0e-28 128.3 148 45.9
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 8.6e-28 127.5 137 48.9
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.9e-27 126.3 100 59.0
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 3.7e-23 112.1 136 47.1
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.9e-22 109.8 132 50.0
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 3.0e-20 102.4 127 43.3
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 8.1e-18 94.4 64 71.9
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.4e-17 93.6 106 48.1
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.1e-17 92.4 118 40.7
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.0e-16 89.7 58 72.4
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 7.5e-16 87.8 73 50.7
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 9.9e-16 87.4 104 46.2
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.3e-15 87.0 58 74.1
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.7e-15 86.7 77 62.3
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 2.4e-14 82.8 45 68.9
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 6.6e-12 74.7 52 59.6
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 4.7e-10 68.6 68 57.4
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 5.2e-09 65.1 34 70.6
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 2.9e-07 59.3 38 71.1
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 1.9e-06 56.6 67 47.8


User provided reference genes

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