Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025600 Lotus japonicus HOM05D006591 ORTHO05D007861 1.2e-47 194.1 246 100.0
Glyma.01G055500 Glycine max HOM05D006591 ORTHO05D007861 8.4e-36 154.8 125 85.6
Glyma.02G113900 Glycine max HOM05D006591 ORTHO05D007861 1.0e-33 147.9 123 74.0
Psat2g128080 Pisum sativum HOM05D006591 ORTHO05D007861 1.5e-32 144.1 125 75.2
Phvul.002G068900 Phaseolus vulgaris HOM05D006591 ORTHO05D007861 7.3e-32 141.7 121 69.4
TPR.G2283 Trifolium pratense HOM05D006591 ORTHO05D007861 4.7e-31 139.0 123 63.4
VMungo1215G0675 Vigna mungo HOM05D006591 ORTHO05D007861 6.9e-30 135.2 119 81.5
Lalb_Chr10g0098581 Lupinus albus HOM05D006591 ORTHO05D007861 2.9e-28 129.8 127 77.2
TPR.G24426 Trifolium pratense HOM05D006591 ORTHO05D007861 1.0e-25 121.3 123 73.2
Ca_04911_v3 Cicer arietinum L. HOM05D006591 ORTHO05D007861 2.3e-25 120.2 125 73.6
Ciclev10032613m.g Citrus clementina HOM05D006591 ORTHO05D007861 3.0e-25 119.8 125 67.2
MELO3C002930.2 Cucumis melo HOM05D006591 ORTHO05D007861 3.0e-25 119.8 123 55.3
PGSC0003DMG400028326 Solanum tuberosum HOM05D006591 ORTHO05D007861 5.1e-25 119.0 117 68.4
Medtr5g043640 Medicago truncatula HOM05D006591 ORTHO05D007861 6.6e-25 118.6 125 72.0
arahy.Tifrunner.gnm1.ann1.09DLU7 Arachis hypogaea HOM05D006591 ORTHO05D007861 1.5e-24 117.5 123 70.7
Dinv16706 Davidia involucrata HOM05D006591 ORTHO05D007861 1.9e-24 117.1 125 66.4
CANSAT64G0984 Cannabis sativa HOM05D006591 ORTHO05D007861 3.3e-24 116.3 124 69.4
Solyc05g012590.4 Solanum lycopersicum HOM05D006591 ORTHO05D007861 7.3e-24 115.2 115 54.8
Sopen05g007420 Solanum pennellii HOM05D006591 ORTHO05D007861 1.3e-23 114.4 117 65.8
QL03p070967 Quercus lobata HOM05D006591 ORTHO05D007861 4.8e-23 112.5 121 52.1
TWI79G1606 Tripterygium wilfordii HOM05D006591 ORTHO05D007861 8.1e-23 111.7 121 64.5
arahy.Tifrunner.gnm1.ann1.74ATFD Arachis hypogaea HOM05D006591 ORTHO05D007861 1.8e-22 110.5 123 54.5
Peaxi162Scf00314g00027 Petunia axillaris HOM05D006591 ORTHO05D007861 3.1e-22 109.8 107 65.4
Actinidia19919 Actinidia chinensis HOM05D006591 ORTHO05D007861 5.3e-22 109.0 122 51.6
Lj3C1032T3 Lonicera japonica HOM05D006591 ORTHO05D007861 5.3e-22 109.0 122 64.8
Atru.chr11.1685 Acer truncatum HOM05D006591 ORTHO05D007861 1.2e-21 107.8 125 65.6
Gohir.D05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 1.2e-21 107.8 110 57.3
Gorai.009G326200 Gossypium raimondii HOM05D006591 ORTHO05D007861 1.2e-21 107.8 109 56.9
GSVIVG01012181001 Vitis vinifera HOM05D006591 ORTHO05D007861 1.2e-21 107.8 121 62.0
BcaC04g21487 Brassica carinata HOM05D006591 ORTHO05D007861 1.5e-21 107.5 116 50.9
C09p31230 Brassica napus HOM05D006591 ORTHO05D007861 1.5e-21 107.5 116 50.9
BolC9t55979H Brassica oleracea HOM05D006591 ORTHO05D007861 1.5e-21 107.5 116 50.9
CSS0032544 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 2.0e-21 107.1 124 51.6
COL.COLO4_05797 Corchorus olitorius HOM05D006591 ORTHO05D007861 2.0e-21 107.1 107 57.0
Gohir.A05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 2.0e-21 107.1 110 56.4
PGR119G1238 Punica granatum HOM05D006591 ORTHO05D007861 2.0e-21 107.1 125 48.8
DCAR_027452 Daucus carota HOM05D006591 ORTHO05D007861 4.5e-21 105.9 123 60.2
Cpa.g.sc1.95 Carica papaya HOM05D006591 ORTHO05D007861 7.6e-21 105.1 123 48.8
Cfa008903 Carpinus fangiana HOM05D006591 ORTHO05D007861 9.9e-21 104.8 125 60.0
CsaV3_5G025480 Cucumis sativus L. HOM05D006591 ORTHO05D007861 1.3e-20 104.4 123 64.2
CiPaw.06G090100 Carya illinoinensis HOM05D006591 ORTHO05D007861 1.7e-20 104.0 125 64.8
CAN.G1340.9 Capsicum annuum HOM05D006591 ORTHO05D007861 2.2e-20 103.6 110 64.5
Duzib268G0337 Durio zibethinus HOM05D006591 ORTHO05D007861 2.9e-20 103.2 117 54.7
vmacro16368 Vaccinium macrocarpon HOM05D006591 ORTHO05D007861 2.9e-20 103.2 119 51.3
Nn4g23331 Nelumbo nucifera HOM05D006591 ORTHO05D007861 6.4e-20 102.1 123 60.2
Haze_11932 Corylus avellana HOM05D006591 ORTHO05D007861 1.1e-19 101.3 148 43.2
Prupe.1G282400 Prunus persica HOM05D006591 ORTHO05D007861 4.2e-19 99.4 124 61.3
ECA246G1963 Erigeron canadensis HOM05D006591 ORTHO05D007861 7.1e-19 98.6 116 62.1
Rhsim12G0134100 Rhododendron simsii HOM05D006591 ORTHO05D007861 1.2e-18 97.8 159 42.8
Hund25197 Selenicereus undatus HOM05D006591 ORTHO05D007861 1.2e-18 97.8 91 58.2
Thhalv10004832m.g Eutrema salsugineum HOM05D006591 ORTHO05D007861 2.7e-18 96.7 116 49.1
TWI75G0359 Tripterygium wilfordii HOM05D006591 ORTHO05D007861 2.7e-18 96.7 121 59.5
MD13G1065800 Malus domestica HOM05D006591 ORTHO05D007861 3.5e-18 96.3 123 60.2
HanXRQChr17g0545461 Helianthus annuus HOM05D006591 ORTHO05D007861 4.6e-18 95.9 123 54.5
BcaB07g30669 Brassica carinata HOM05D006591 ORTHO05D007861 6.0e-18 95.5 116 56.9
Carub.0005s0239 Capsella rubella HOM05D006591 ORTHO05D007861 6.0e-18 95.5 117 60.7
MD16G1064400 Malus domestica HOM05D006591 ORTHO05D007861 7.9e-18 95.1 122 60.7
BraA09t38037Z Brassica rapa HOM05D006591 ORTHO05D007861 1.3e-17 94.4 117 57.3
CSS0024373 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.8e-17 94.0 93 57.0
TAR374G1558 Trochodendron aralioides HOM05D006591 ORTHO05D007861 1.8e-17 94.0 121 57.0
Oeu028261.1 Olea europaea HOM05D006591 ORTHO05D007861 3.0e-17 93.2 117 58.1
CSS0002938 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 3.9e-17 92.8 93 57.0
CSS0020090 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 3.9e-17 92.8 93 57.0
Actinidia31944 Actinidia chinensis HOM05D006591 ORTHO05D007861 5.1e-17 92.4 116 48.3
CSS0029304 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 5.1e-17 92.4 93 57.0
Cc11_g12350 Coffea canephora HOM05D006591 ORTHO05D007861 6.7e-17 92.0 116 47.4
Thecc.02G335700 Theobroma cacao HOM05D006591 ORTHO05D007861 1.1e-16 91.3 121 62.8
A09p24440 Brassica napus HOM05D006591 ORTHO05D007861 1.5e-16 90.9 117 56.4
ATR0111G005 Amborella trichopoda HOM05D006591 ORTHO05D007861 4.3e-16 89.4 125 57.6
Manes.05G107800 Manihot esculenta HOM05D006591 ORTHO05D007861 5.6e-16 89.0 115 60.9
MSTRG.2323 Avicennia marina HOM05D006591 ORTHO05D007861 1.3e-15 87.8 119 59.7
RcHm_v2.0_Chr4g0438821 Rosa chinensis HOM05D006591 ORTHO05D007861 1.3e-15 87.8 114 61.4
AagrBONN_evm.TU.Sc2ySwM_344.1136 Anthoceros agrestis HOM05D006591 ORTHO05D007861 2.1e-15 87.0 107 47.7
Sc11g0002290 Simmondsia chinensis HOM05D006591 ORTHO05D007861 4.8e-15 85.9 117 59.0
Potri.010G161300 Populus trichocarpa HOM05D006591 ORTHO05D007861 6.2e-15 85.5 88 55.7
SGA_v2.0_scaffold287G47153 Striga asiatica HOM05D006591 ORTHO05D007861 6.2e-15 85.5 122 59.0
Lsat_1_v5_gn_3_56260 Lactuca sativa HOM05D006591 ORTHO05D007861 1.1e-14 84.7 125 56.0
FAN22G1196 Fragaria x ananassa HOM05D006591 ORTHO05D007861 1.4e-14 84.3 115 60.0
Sp2g14340 Schrenkiella parvula HOM05D006591 ORTHO05D007861 2.4e-14 83.6 117 55.6
THA.LOC104801815 Tarenaya hassleriana HOM05D006591 ORTHO05D007861 3.1e-14 83.2 84 57.1
AL5G13180 Arabidopsis lyrata HOM05D006591 ORTHO05D007861 4.0e-14 82.8 82 54.9
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 5.3e-14 82.4 106 52.8
PSO017G3262 Papaver somniferum HOM05D006591 ORTHO05D007861 6.9e-14 82.0 122 56.6
CARHR145770 Cardamine hirsuta HOM05D006591 ORTHO05D007861 2.0e-13 80.5 82 54.9
FAN07G2187 Fragaria x ananassa HOM05D006591 ORTHO05D007861 2.6e-13 80.1 113 57.5
PSO478G2874 Papaver somniferum HOM05D006591 ORTHO05D007861 2.6e-13 80.1 124 54.8
Sabra10G0122800 Salix brachista HOM05D006591 ORTHO05D007861 3.4e-13 79.7 87 52.9
Migut.E00061 Erythranthe guttata HOM05D006591 ORTHO05D007861 7.6e-13 78.6 117 58.1
EL10Ac6g14958 Beta vulgaris HOM05D006591 ORTHO05D007861 9.9e-13 78.2 106 55.7
FAN17G0139 Fragaria x ananassa HOM05D006591 ORTHO05D007861 9.9e-13 78.2 113 57.5
FvH4_4g30470 Fragaria vesca HOM05D006591 ORTHO05D007861 2.2e-12 77.0 113 56.6
Aqoxy3G00449 Aquilegia oxysepala HOM05D006591 ORTHO05D007861 3.8e-12 76.3 85 50.6
FAN12G1471 Fragaria x ananassa HOM05D006591 ORTHO05D007861 4.9e-12 75.9 113 55.8
SEGI_35394 Sequoiadendron giganteum HOM05D006591 ORTHO05D007861 6.4e-12 75.5 76 50.0
BcaC02g07876 Brassica carinata HOM05D006591 ORTHO05D007861 2.4e-11 73.6 92 45.7
CSS0029980 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 2.4e-11 73.6 93 50.5
AT2G03430 Arabidopsis thaliana HOM05D006591 ORTHO05D007861 3.2e-11 73.2 81 54.3
Zm00001eb214530 Zea mays HOM05D006591 ORTHO05D007861 4.2e-11 72.8 109 59.6
Cre02.g117550 Chlamydomonas reinhardtii HOM05D006591 ORTHO05D007861 5.5e-11 72.4 100 42.0
Eucgr.G02461 Eucalyptus grandis HOM05D006591 ORTHO05D007861 5.5e-11 72.4 77 54.5
Mapoly0001s0139 Marchantia polymorpha HOM05D006591 ORTHO05D007861 7.1e-11 72.0 99 41.4
Ah.02g126600 Amaranthus hybridus HOM05D006591 ORTHO05D007861 1.2e-10 71.2 118 40.7
CDE07G0054 Ceratophyllum demersum HOM05D006591 ORTHO05D007861 2.7e-10 70.1 120 50.8
C06p01310 Brassica napus HOM05D006591 ORTHO05D007861 3.5e-10 69.7 127 39.4
unitig_22.g5555 Utricularia gibba HOM05D006591 ORTHO05D007861 3.5e-10 69.7 71 54.9
Nitab4.5_0000334g0240 Nicotiana tabacum HOM05D006591 ORTHO05D007861 4.6e-10 69.3 88 48.9
HPP92_018457 Vanilla planifolia HOM05D006591 ORTHO05D007861 7.9e-10 68.6 69 55.1
Sed0000747 Sechium edule HOM05D006591 ORTHO05D007861 1.8e-09 67.4 90 45.6
Pp3c6_21850 Physcomitrium patens HOM05D006591 ORTHO05D007861 3.3e-08 63.2 101 40.6
CBR_g23768 Chara braunii HOM05D006591 ORTHO05D007861 5.6e-08 62.4 80 43.8
EL10Ac6g14961 Beta vulgaris HOM05D027931 ORTHO05D007861 6.2e-07 58.9 105 34.3
BolC4t27718H Brassica oleracea HOM05D006591 ORTHO05D007861 1.8e-06 57.4 147 31.3
EL10Ac6g14960 Beta vulgaris HOM05D006591 ORTHO05D007861 3.1e-06 56.6 102 36.3
Gohir.D10G139700 Gossypium hirsutum HOM05D006591 ORTHO05D007861 4.0e-06 56.2 65 52.3


User provided reference genes

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