Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 3.4e-71 271.6 138 100.0
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 3.7e-33 145.2 121 64.5
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 1.1e-32 143.7 121 64.5
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 9.1e-32 140.6 119 62.2
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 5.9e-31 137.9 126 61.9
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.9e-31 137.9 119 59.7
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 5.0e-30 134.8 122 60.7
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 2.5e-29 132.5 136 56.6
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 3.0e-27 125.6 123 56.1
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 4.0e-27 125.2 133 52.6
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.8e-27 124.4 121 56.2
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 8.9e-27 124.0 125 54.4
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.6e-26 122.5 124 54.8
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.3e-25 120.2 121 54.5
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.7e-25 119.8 126 54.8
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 1.7e-25 119.8 123 55.3
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.9e-25 119.0 124 53.2
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 3.7e-25 118.6 121 54.5
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.4e-24 116.7 121 52.9
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 2.4e-24 115.9 128 57.0
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 3.2e-24 115.5 122 54.9
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 3.2e-24 115.5 122 54.9
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 4.1e-24 115.2 124 52.4
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 5.4e-24 114.8 122 54.1
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 9.2e-24 114.0 125 50.4
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.6e-23 113.2 141 51.8
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.0e-22 110.5 127 48.0
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 2.9e-22 109.0 108 54.6
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 2.1e-20 102.8 103 57.3
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 2.8e-20 102.4 120 50.8
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 6.1e-20 101.3 124 50.0
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 4.9e-17 91.7 125 46.4
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 8.3e-17 90.9 135 40.7
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.1e-16 90.5 123 43.9
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.4e-16 90.1 132 42.4
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.9e-16 89.7 128 40.6
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.9e-16 89.7 123 44.7
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 2.4e-16 89.4 121 43.8
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 4.1e-16 88.6 124 43.5
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 5.4e-16 88.2 124 43.5
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.2e-15 87.0 121 39.7
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.0e-15 86.3 127 45.7
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 2.0e-15 86.3 127 45.7
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 2.0e-15 86.3 125 44.8
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 2.0e-15 86.3 132 40.2
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.7e-15 85.9 127 45.7
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.7e-15 85.9 127 45.7
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 2.7e-15 85.9 120 43.3
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.5e-15 85.5 128 42.2
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.5e-15 85.5 124 43.5
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 3.5e-15 85.5 121 43.8
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.6e-15 85.1 135 40.0
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 4.6e-15 85.1 135 40.0
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 7.8e-15 84.3 127 46.5
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 7.8e-15 84.3 128 46.1
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 7.8e-15 84.3 129 38.8
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.0e-14 84.0 127 44.9
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.0e-14 84.0 126 46.0
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 1.3e-14 83.6 127 45.7
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.3e-14 83.6 130 38.5
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.3e-14 83.6 133 46.6
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.7e-14 83.2 129 46.5
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.3e-14 82.8 125 44.0
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 2.3e-14 82.8 131 41.2
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.3e-14 82.8 129 48.8
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.3e-14 82.8 135 39.3
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.3e-14 82.8 127 44.1
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-14 82.4 127 44.1
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.0e-14 82.4 127 44.1
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.0e-14 81.6 127 44.9
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 8.6e-14 80.9 127 44.1
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 8.6e-14 80.9 127 44.1
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-13 80.5 127 43.3
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-13 80.5 127 43.3
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.1e-13 80.5 133 41.4
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 1.1e-13 80.5 122 41.8
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-13 80.1 125 42.4
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-13 80.1 125 42.4
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-13 80.1 125 42.4
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.5e-13 80.1 125 42.4
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 1.5e-13 80.1 125 42.4
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 3.3e-13 79.0 128 43.8
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 4.3e-13 78.6 138 41.3
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 5.6e-13 78.2 128 43.8
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 5.6e-13 78.2 121 42.1
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 7.3e-13 77.8 128 42.2
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 7.3e-13 77.8 128 42.2
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 7.3e-13 77.8 128 42.2
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 9.5e-13 77.4 142 38.0
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 9.5e-13 77.4 124 38.7
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-12 77.0 126 41.3
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.2e-12 77.0 130 41.5
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.2e-12 77.0 128 43.0
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-12 76.6 127 41.7
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.6e-12 76.6 128 43.0
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.6e-12 76.6 128 42.2
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 1.6e-12 76.6 127 41.7
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-12 76.3 128 42.2
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.8e-12 75.9 128 43.0
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.6e-12 75.5 133 39.8
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-12 75.5 128 41.4
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 3.6e-12 75.5 132 40.2
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 3.6e-12 75.5 132 40.2
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 4.7e-12 75.1 122 44.3
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 6.2e-12 74.7 129 40.3
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 6.2e-12 74.7 127 40.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 6.2e-12 74.7 127 40.9
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 6.2e-12 74.7 127 40.9
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 6.2e-12 74.7 123 38.2
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 8.1e-12 74.3 133 39.1
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.1e-11 73.9 99 46.5
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.3e-11 72.8 135 40.7
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.1e-11 72.4 133 39.1
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.0e-11 72.0 128 39.8
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 4.0e-11 72.0 138 37.7
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 4.0e-11 72.0 109 41.3
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 4.0e-11 72.0 137 38.7
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.0e-11 72.0 113 41.6
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 5.2e-11 71.6 117 41.0
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 5.2e-11 71.6 141 36.2
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 6.8e-11 71.2 54 61.1
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.8e-11 71.2 109 39.4
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.5e-10 70.1 119 36.1
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.5e-10 70.1 107 39.3
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.5e-10 70.1 129 41.1
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.4e-10 68.9 126 38.1
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.4e-10 68.6 130 38.5
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 4.4e-10 68.6 121 40.5
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 4.4e-10 68.6 121 40.5
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.4e-10 68.6 115 39.1
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 5.8e-10 68.2 110 39.1
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 7.5e-10 67.8 113 40.7
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 7.5e-10 67.8 137 37.2
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 9.8e-10 67.4 131 35.1
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 9.8e-10 67.4 97 44.3
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 9.8e-10 67.4 113 39.8
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 9.8e-10 67.4 116 40.5
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.3e-09 67.0 127 38.6
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.2e-09 66.2 125 36.0
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.2e-09 66.2 128 39.1
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.2e-09 66.2 107 38.3
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 2.2e-09 66.2 52 53.8
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 2.9e-09 65.9 133 33.1
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 4.9e-09 65.1 128 39.1
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 4.9e-09 65.1 128 39.1
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 6.4e-09 64.7 135 39.3
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 8.3e-09 64.3 114 38.6
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 8.3e-09 64.3 108 41.7
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 8.3e-09 64.3 108 40.7
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 8.3e-09 64.3 125 40.0
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.1e-08 63.9 97 42.3
Medtr7g026910 Medicago truncatula HOM05D003805 ORTHO05D004300 1.4e-08 63.5 85 48.2
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.9e-08 63.2 64 53.1
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.9e-08 63.2 55 50.9
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 3.2e-08 62.4 103 39.8
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.2e-08 62.4 107 39.3
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 3.2e-08 62.4 113 39.8
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.1e-08 62.0 130 33.8
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 4.1e-08 62.0 132 32.6
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 4.1e-08 62.0 132 32.6
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 4.1e-08 62.0 124 35.5
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 5.4e-08 61.6 113 38.9
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 7.1e-08 61.2 81 46.9
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 9.2e-08 60.8 127 33.9
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 9.2e-08 60.8 159 34.0
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 9.2e-08 60.8 132 32.6
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-07 59.7 37 64.9
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 2.1e-07 59.7 48 62.5
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.1e-07 59.7 120 36.7
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.1e-07 59.7 57 49.1
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 2.7e-07 59.3 106 43.4
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 6.0e-07 58.2 60 43.3
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 7.8e-07 57.8 66 43.9
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 1.3e-06 57.0 106 36.8
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 1.7e-06 56.6 110 40.0
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.0e-06 55.8 94 36.2


User provided reference genes

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