Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025499 Lotus japonicus HOM05D001384 ORTHO05D001215 2.2e-20 101.7 64 100.0
Psat1g048920 Pisum sativum HOM05D001384 ORTHO05D001215 1.9e-16 88.6 64 82.8
Glyma.01G004600 Glycine max HOM05D001384 ORTHO05D001215 6.2e-15 83.6 66 77.3
Glyma.07G127200 Glycine max HOM05D001384 ORTHO05D001215 8.0e-15 83.2 64 71.9
Medtr6g090535 Medicago truncatula HOM05D001384 ORTHO05D001215 3.4e-13 77.8 64 64.1
arahy.Tifrunner.gnm1.ann1.3Z4R3A Arachis hypogaea HOM05D001384 ORTHO05D001215 4.4e-13 77.4 64 68.8
arahy.Tifrunner.gnm1.ann1.TI6HCL Arachis hypogaea HOM05D001384 ORTHO05D001215 4.4e-13 77.4 64 68.8
Phvul.004G173101 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 2.2e-12 75.1 64 67.2
Thecc.09G095500 Theobroma cacao HOM05D001384 ORTHO05D001215 3.7e-12 74.3 64 62.5
Prupe.7G215700 Prunus persica HOM05D001384 ORTHO05D001215 1.1e-11 72.8 64 60.9
MD02G1072000 Malus domestica HOM05D001384 ORTHO05D001215 5.4e-11 70.5 64 59.4
Peaxi162Scf00498g00030 Petunia axillaris HOM05D001384 ORTHO05D001215 7.0e-11 70.1 64 59.4
Migut.J01071 Erythranthe guttata HOM05D001384 ORTHO05D001215 1.6e-10 68.9 64 62.5
Nitab4.5_0000540g0040 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.0e-10 68.6 64 59.4
MD15G1201800 Malus domestica HOM05D001384 ORTHO05D001215 2.7e-10 68.2 64 56.2
TAR626G0551 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.0e-09 66.2 64 53.1
CSS0002673 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 2.3e-09 65.1 68 64.7
CSS0049312 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 2.3e-09 65.1 68 64.7
Lalb_Chr24g0393961 Lupinus albus HOM05D001384 ORTHO05D001215 2.3e-09 65.1 64 60.9
HanXRQChr10g0319041 Helianthus annuus HOM05D001384 ORTHO05D001215 3.0e-09 64.7 56 58.9
Lalb_Chr22g0349831 Lupinus albus HOM05D001384 ORTHO05D001215 5.0e-09 63.9 64 59.4
Haze_25860 Corylus avellana HOM05D001384 ORTHO05D001215 6.6e-09 63.5 72 62.5
GSVIVG01015262001 Vitis vinifera HOM05D001384 ORTHO05D001215 8.6e-09 63.2 66 66.7
CSS0028432 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 1.5e-08 62.4 67 62.7
FvH4_1g06710 Fragaria vesca HOM05D001384 ORTHO05D001215 1.5e-08 62.4 65 55.4
HanXRQChr09g0238501 Helianthus annuus HOM05D001384 ORTHO05D001215 1.9e-08 62.0 64 53.1
RcHm_v2.0_Chr2g0092451 Rosa chinensis HOM05D001384 ORTHO05D001215 2.5e-08 61.6 65 55.4
DCAR_012014 Daucus carota HOM05D001384 ORTHO05D001215 3.3e-08 61.2 64 68.8
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 5.6e-08 60.5 63 50.8
DCAR_010686 Daucus carota HOM05D001384 ORTHO05D001215 5.6e-08 60.5 65 64.6
Migut.K00567 Erythranthe guttata HOM05D001384 ORTHO05D001215 5.6e-08 60.5 65 63.1
TWI14G0223 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 5.6e-08 60.5 64 60.9
COL.COLO4_18260 Corchorus olitorius HOM05D001384 ORTHO05D001215 7.3e-08 60.1 56 60.7
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 7.3e-08 60.1 54 57.4
FAN23G2194 Fragaria x ananassa HOM05D001384 ORTHO05D001215 9.5e-08 59.7 65 53.8
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 9.5e-08 59.7 60 51.7
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 9.5e-08 59.7 60 51.7
HanXRQChr12g0355291 Helianthus annuus HOM05D001384 ORTHO05D001215 9.5e-08 59.7 56 64.3
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-07 59.3 60 61.7
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 1.2e-07 59.3 60 56.7
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.2e-07 59.3 63 50.8
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 1.2e-07 59.3 63 58.7
TWI39G0811 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 1.6e-07 58.9 64 54.7
GSVIVG01019489001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.6e-07 58.9 64 53.1
Cc06_g10880 Coffea canephora HOM05D001384 ORTHO05D001215 2.1e-07 58.5 65 61.5
Dinv37556 Davidia involucrata HOM05D001384 ORTHO05D001215 2.8e-07 58.2 63 49.2
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.8e-07 58.2 54 55.6
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.8e-07 58.2 54 55.6
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 2.8e-07 58.2 54 55.6
CiPaw.03G220500 Carya illinoinensis HOM05D001384 ORTHO05D001215 3.6e-07 57.8 65 50.8
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.6e-07 57.8 60 50.0
Lsat_1_v5_gn_7_38720 Lactuca sativa HOM05D001384 ORTHO05D001215 3.6e-07 57.8 65 53.8
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 3.6e-07 57.8 63 52.4
FAN28G1521 Fragaria x ananassa HOM05D001384 ORTHO05D001215 4.7e-07 57.4 65 50.8
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.2e-07 57.0 60 48.3
Nitab4.5_0003781g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 8.1e-07 56.6 64 60.9
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 1.1e-06 56.2 63 47.6
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 1.1e-06 56.2 54 53.7
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 1.1e-06 56.2 61 55.7
Lj4g0006841 Lotus japonicus HOM05D001384 ORTHO05D001215 1.4e-06 55.8 55 69.1
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.8e-06 55.5 60 48.3
arahy.Tifrunner.gnm1.ann1.T3QZI5 Arachis hypogaea HOM05D001384 ORTHO05D001215 5.2e-06 53.9 56 62.5
arahy.Tifrunner.gnm1.ann1.Y9NP63 Arachis hypogaea HOM05D001384 ORTHO05D001215 5.2e-06 53.9 54 63.0
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 5.2e-06 53.9 59 49.2
FvH4_7g30990 Fragaria vesca HOM05D001384 ORTHO05D001215 5.2e-06 53.9 55 52.7
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 5.2e-06 53.9 53 50.9
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 5.2e-06 53.9 55 54.5
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 5.2e-06 53.9 55 54.5
TWI15G0052 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 5.2e-06 53.9 63 54.0
AT5G24105 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 6.8e-06 53.5 55 49.1
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 6.8e-06 53.5 64 46.9
Mapoly0079s0002 Marchantia polymorpha HOM05D001384 ORTHO05D001215 6.8e-06 53.5 57 47.4
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 6.8e-06 53.5 64 54.7
Carub.0006s2183 Capsella rubella HOM05D001384 ORTHO05D001215 8.9e-06 53.1 64 43.8
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 8.9e-06 53.1 59 47.5
Manes.06G156900 Manihot esculenta HOM05D001384 ORTHO05D001215 8.9e-06 53.1 59 45.8
Oeu030571.1 Olea europaea HOM05D001384 ORTHO05D001215 8.9e-06 53.1 59 47.5
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 8.9e-06 53.1 53 50.9
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 8.9e-06 53.1 53 50.9
TWI59G0487 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 8.9e-06 53.1 54 59.3


User provided reference genes

Program Settings