Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.0e-107 392.5 211 100.0
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 2.9e-85 318.9 209 83.7
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 3.7e-85 318.5 206 84.0
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.9e-84 316.2 211 82.9
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 4.1e-84 315.1 211 82.9
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 2.1e-83 312.8 211 82.0
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 2.7e-83 312.4 209 82.8
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 7.8e-83 310.8 209 81.3
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 1.2e-80 303.5 211 80.1
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.6e-75 286.6 213 77.9
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 1.4e-71 273.5 186 80.1
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 2.4e-71 272.7 186 79.0
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 4.0e-71 271.9 185 80.0
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 5.3e-71 271.6 203 73.9
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 9.0e-71 270.8 209 73.7
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 1.5e-70 270.0 209 71.3
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.5e-70 270.0 207 71.0
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.4e-70 268.5 186 77.4
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 7.6e-70 267.7 197 76.1
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.3e-69 266.9 186 76.9
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.7e-69 266.5 209 71.8
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 2.2e-69 266.2 194 73.7
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.4e-68 263.5 196 74.5
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.9e-68 263.1 202 73.8
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.9e-68 263.1 203 73.4
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.4e-68 262.7 200 74.5
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 3.2e-68 262.3 186 75.3
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 4.2e-68 261.9 195 71.8
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 9.3e-68 260.8 209 68.9
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 9.3e-68 260.8 206 71.4
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 3.5e-67 258.8 210 68.6
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 6.0e-67 258.1 194 72.7
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 7.9e-67 257.7 208 69.7
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.0e-66 257.3 185 74.1
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.7e-66 256.5 185 75.7
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 3.0e-66 255.8 180 77.2
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 5.1e-66 255.0 194 72.7
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 8.7e-66 254.2 211 68.2
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.5e-65 253.4 209 68.9
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.5e-65 253.4 195 70.3
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.5e-65 253.4 195 70.3
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.9e-65 253.1 197 72.6
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 3.3e-65 252.3 211 65.9
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 5.6e-65 251.5 192 71.4
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.3e-64 250.4 197 72.1
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.1e-64 249.6 203 70.9
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.1e-64 249.6 198 68.7
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.6e-64 248.8 194 71.1
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.4e-63 246.9 184 71.7
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 3.1e-63 245.7 205 67.8
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 4.0e-63 245.4 203 70.0
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 1.5e-62 243.4 182 69.8
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 3.4e-62 242.3 207 67.1
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 4.5e-62 241.9 209 68.9
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 1.3e-61 240.4 182 73.6
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 2.2e-61 239.6 223 64.6
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.1e-60 237.3 192 66.7
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.4e-60 236.9 185 68.1
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.9e-60 236.5 209 63.6
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 2.4e-60 236.1 203 64.5
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 3.2e-60 235.7 210 64.3
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 4.2e-60 235.3 208 64.9
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 2.7e-59 232.6 226 59.7
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 4.6e-59 231.9 203 64.0
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 7.9e-59 231.1 179 72.1
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.1e-57 227.3 200 64.0
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 2.5e-57 226.1 207 62.3
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 5.6e-57 224.9 197 66.5
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 7.4e-57 224.6 188 64.9
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 7.4e-57 224.6 187 65.2
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 7.4e-57 224.6 188 64.9
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 7.4e-57 224.6 188 64.9
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 7.4e-57 224.6 197 64.5
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 7.4e-57 224.6 197 63.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 7.4e-57 224.6 209 63.6
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.3e-56 223.8 188 64.4
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 2.1e-56 223.0 209 59.8
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 3.7e-56 222.2 193 62.7
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 3.7e-56 222.2 193 62.7
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 1.8e-55 219.9 197 63.5
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 5.3e-55 218.4 173 66.5
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 1.2e-54 217.2 187 63.6
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 1.2e-54 217.2 187 63.6
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 1.2e-54 217.2 187 63.6
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.5e-54 216.9 196 63.3
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 4.5e-54 215.3 190 65.8
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 7.6e-54 214.5 166 66.9
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 1.0e-53 214.2 170 66.5
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.2e-53 213.0 181 64.6
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 3.8e-53 212.2 197 60.4
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 3.8e-53 212.2 151 72.2
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 6.5e-53 211.5 196 62.2
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.9e-52 209.9 211 58.3
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.2e-52 209.1 151 73.5
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 7.1e-52 208.0 151 73.5
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 9.3e-52 207.6 186 64.0
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 9.3e-52 207.6 207 56.5
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 1.6e-51 206.8 212 58.0
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.6e-51 205.3 142 77.5
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 3.9e-50 202.2 248 51.6
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 8.7e-50 201.1 188 57.4
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.1e-49 200.7 197 58.9
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.9e-49 199.9 142 72.5
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 9.6e-49 197.6 141 72.3
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 8.2e-48 194.5 139 74.1
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 3.1e-47 192.6 185 57.3
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.7e-45 186.8 133 72.9
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.7e-43 179.5 212 54.7
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 4.6e-43 178.7 151 68.9
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 6.1e-43 178.3 185 55.7
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.5e-41 173.7 143 63.6
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 2.8e-40 169.5 115 73.9
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 4.1e-39 165.6 137 70.1
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 3.4e-38 162.5 111 68.5
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 2.8e-32 142.9 123 69.1
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.5e-30 137.1 85 81.2
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.4e-30 136.0 85 80.0
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.8e-29 132.5 123 56.1
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.8e-29 132.5 85 78.8
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 3.2e-28 129.4 114 63.2
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 1.8e-26 123.6 83 79.5
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.1e-25 120.9 100 69.0
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 1.4e-23 114.0 161 39.1
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.4e-23 113.2 149 47.7
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 5.3e-23 112.1 93 62.4
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 3.5e-22 109.4 120 51.7
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 7.7e-22 108.2 192 37.0
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.3e-21 107.5 200 36.5
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 8.5e-21 104.8 69 76.8
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 1.9e-20 103.6 67 73.1
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 9.4e-20 101.3 152 46.7
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 8.8e-18 94.7 66 74.2
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.6e-17 93.2 79 64.6
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.8e-15 87.0 103 41.7
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 1.2e-11 74.3 139 36.0
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.6e-06 57.4 83 45.8
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 7.7e-06 55.1 63 50.8


User provided reference genes

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