Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025231 Lotus japonicus HOM05D003294 ORTHO05D004060 3.3e-39 167.2 93 100.0
Lj2g0020269 Lotus japonicus HOM05D003294 ORTHO05D004060 1.7e-35 154.8 92 94.6
Lj6g0023787 Lotus japonicus HOM05D003294 ORTHO05D004060 1.1e-31 142.1 76 88.2
Glyma.20G247850 Glycine max HOM05D003294 ORTHO05D004060 1.8e-29 134.8 75 84.0
arahy.Tifrunner.gnm1.ann1.NU92WK Arachis hypogaea HOM05D003294 ORTHO05D004060 1.2e-28 132.1 69 87.0
VMungo0720G0780 Vigna mungo HOM05D003294 ORTHO05D004060 1.2e-28 132.1 70 84.3
Psat0s3952g0120 Pisum sativum HOM05D003294 ORTHO05D004060 2.0e-28 131.3 70 85.7
Lj5g0001019 Lotus japonicus HOM05D003294 ORTHO05D004060 2.6e-28 131.0 75 85.3
Psat6g050240 Pisum sativum HOM05D003294 ORTHO05D004060 2.6e-28 131.0 70 84.3
Phvul.007G002400 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 3.4e-28 130.6 67 89.6
TPR.G36208 Trifolium pratense HOM05D003294 ORTHO05D004060 3.4e-28 130.6 70 84.3
TPR.G40851 Trifolium pratense HOM05D003294 ORTHO05D004060 9.9e-28 129.0 75 81.3
Medtr1g116947 Medicago truncatula HOM05D003294 ORTHO05D004060 2.2e-27 127.9 69 82.6
Psat0s2492g0040 Pisum sativum HOM05D003294 ORTHO05D004060 2.9e-27 127.5 69 81.2
Lalb_Chr02g0144471 Lupinus albus HOM05D003294 ORTHO05D004060 2.4e-26 124.4 67 85.1
Medtr1g033080 Medicago truncatula HOM05D003294 ORTHO05D004060 2.4e-26 124.4 69 79.7
Medtr1g033130 Medicago truncatula HOM05D003294 ORTHO05D004060 2.4e-26 124.4 69 79.7
arahy.Tifrunner.gnm1.ann1.XI0QBF Arachis hypogaea HOM05D003294 ORTHO05D004060 3.2e-26 124.0 79 75.9
VMungo1383G0624 Vigna mungo HOM05D003294 ORTHO05D004060 2.7e-25 120.9 75 72.0
MELO3C000009.2 Cucumis melo HOM05D000068 ORTHO05D000084 7.8e-25 119.4 74 74.3
Phvul.007G084600 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 1.3e-24 118.6 69 79.7
Psat0s3952g0080 Pisum sativum HOM05D003294 ORTHO05D004060 1.7e-24 118.2 92 64.1
Ca_13009_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 3.0e-24 117.5 61 88.5
Ca_13010_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 3.0e-24 117.5 61 88.5
PGR142G3893 Punica granatum HOM05D003294 ORTHO05D004060 3.9e-24 117.1 70 75.7
Sed0006652 Sechium edule HOM05D003294 ORTHO05D004060 8.7e-24 115.9 68 79.4
arahy.Tifrunner.gnm1.ann1.F7AR35 Arachis hypogaea HOM05D003294 ORTHO05D004060 1.5e-23 115.2 68 76.5
arahy.Tifrunner.gnm1.ann1.U0YEJU Arachis hypogaea HOM05D003294 ORTHO05D004060 1.5e-23 115.2 68 76.5
CsaV3_4G003720 Cucumis sativus L. HOM05D003294 ORTHO05D004060 2.5e-23 114.4 69 76.8
Potri.014G151101 Populus trichocarpa HOM05D003294 ORTHO05D004060 3.3e-23 114.0 74 73.0
Thecc.04G182000 Theobroma cacao HOM05D003294 ORTHO05D004060 4.3e-23 113.6 74 70.3
Ca_13008_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 5.6e-23 113.2 61 85.2
Duzib268G0989 Durio zibethinus HOM05D003294 ORTHO05D004060 5.6e-23 113.2 75 68.0
Aa31LG10G13630 Aethionema arabicum HOM05D003294 ORTHO05D004060 7.3e-23 112.8 74 68.9
CiPaw.01G105500 Carya illinoinensis HOM05D003294 ORTHO05D004060 7.3e-23 112.8 68 76.5
Peaxi162Scf00286g00022 Petunia axillaris HOM05D003294 ORTHO05D004060 7.3e-23 112.8 70 71.4
Sed0017100 Sechium edule HOM05D003294 ORTHO05D004060 7.3e-23 112.8 68 76.5
Nn1g09740 Nelumbo nucifera HOM05D003294 ORTHO05D004060 9.6e-23 112.5 71 76.1
PGSC0003DMG400021603 Solanum tuberosum HOM05D003294 ORTHO05D004060 9.6e-23 112.5 70 74.3
Phvul.008G003200 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 1.2e-22 112.1 68 73.5
Sopen09g036430 Solanum pennellii HOM05D003294 ORTHO05D004060 1.2e-22 112.1 68 75.0
DCAR_023908 Daucus carota HOM05D003294 ORTHO05D004060 1.6e-22 111.7 70 72.9
CAN.G710.61 Capsicum annuum HOM05D003294 ORTHO05D004060 2.8e-22 110.9 68 75.0
MBI11_g02538_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.8e-22 110.9 75 69.3
FvH4_4g11660 Fragaria vesca HOM05D003294 ORTHO05D004060 3.6e-22 110.5 75 73.3
FAN07G0287 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.6e-22 110.5 75 73.3
FAN12G0818 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.6e-22 110.5 75 73.3
FAN12G1447 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.6e-22 110.5 75 73.3
FAN22G1863 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.6e-22 110.5 75 73.3
BolC3t15227H Brassica oleracea HOM05D003294 ORTHO05D004060 4.7e-22 110.2 70 70.0
FAN17G2242 Fragaria x ananassa HOM05D003294 ORTHO05D004060 4.7e-22 110.2 75 73.3
Oeu006702.1 Olea europaea HOM05D003294 ORTHO05D004060 4.7e-22 110.2 67 74.6
PSO017G7143 Papaver somniferum HOM05D003294 ORTHO05D004060 4.7e-22 110.2 70 68.6
Sabra02G0176500 Salix brachista HOM05D003294 ORTHO05D004060 4.7e-22 110.2 69 75.4
Actinidia35892 Actinidia chinensis HOM05D003294 ORTHO05D004060 6.2e-22 109.8 68 75.0
Manes.11G114666 Manihot esculenta HOM05D003294 ORTHO05D004060 6.2e-22 109.8 66 75.8
ClCG07G016610 Citrullus lanatus HOM05D003294 ORTHO05D004060 8.1e-22 109.4 67 76.1
Peaxi162Scf00378g00826 Petunia axillaris HOM05D003294 ORTHO05D004060 8.1e-22 109.4 68 70.6
Peaxi162Scf00378g00827 Petunia axillaris HOM05D003294 ORTHO05D004060 8.1e-22 109.4 68 70.6
Peaxi162Scf00378g00828 Petunia axillaris HOM05D003294 ORTHO05D004060 8.1e-22 109.4 68 70.6
QL10p046489 Quercus lobata HOM05D003294 ORTHO05D004060 8.1e-22 109.4 69 71.0
Migut.G00806 Erythranthe guttata HOM05D003294 ORTHO05D004060 1.8e-21 108.2 68 73.5
PSO017G4822 Papaver somniferum HOM05D003294 ORTHO05D004060 1.8e-21 108.2 69 71.0
Sabra14G0114900 Salix brachista HOM05D003294 ORTHO05D004060 1.8e-21 108.2 74 70.3
Actinidia17219 Actinidia chinensis HOM05D003294 ORTHO05D004060 3.1e-21 107.5 67 74.6
Cpa.g.sc164.2 Carica papaya HOM05D003294 ORTHO05D004060 3.1e-21 107.5 68 70.6
MBI08_g05488_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 3.1e-21 107.5 74 64.9
TAR365G0590 Trochodendron aralioides HOM05D003294 ORTHO05D004060 3.1e-21 107.5 67 76.1
BolC4t22061H Brassica oleracea HOM05D003294 ORTHO05D004060 4.0e-21 107.1 65 73.8
Aa31LG1G24960 Aethionema arabicum HOM05D003294 ORTHO05D004060 5.3e-21 106.7 75 64.0
Cfa015791 Carpinus fangiana HOM05D003294 ORTHO05D004060 5.3e-21 106.7 66 75.8
BcaC07g40319 Brassica carinata HOM05D003294 ORTHO05D004060 9.0e-21 105.9 76 67.1
C08p34360 Brassica napus HOM05D003294 ORTHO05D004060 9.0e-21 105.9 76 67.1
BolC8t51035H Brassica oleracea HOM05D003294 ORTHO05D004060 9.0e-21 105.9 76 67.1
Dinv22670 Davidia involucrata HOM05D003294 ORTHO05D004060 9.0e-21 105.9 69 71.0
MBI08_g05491_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 9.0e-21 105.9 69 66.7
Sabra14G0114500 Salix brachista HOM05D003294 ORTHO05D004060 9.0e-21 105.9 74 68.9
BcaC01g05257 Brassica carinata HOM05D003294 ORTHO05D004060 1.5e-20 105.1 65 72.3
C03p28650 Brassica napus HOM05D003294 ORTHO05D004060 1.5e-20 105.1 65 72.3
CSS0007766 Camellia sinensis var. sinensis HOM05D003294 ORTHO05D004060 1.5e-20 105.1 72 72.2
Peaxi162Scf00323g00521 Petunia axillaris HOM05D003294 ORTHO05D004060 1.5e-20 105.1 68 67.6
Potri.002G231250 Populus trichocarpa HOM05D003294 ORTHO05D004060 1.5e-20 105.1 67 73.1
A03p24060 Brassica napus HOM05D003294 ORTHO05D004060 2.0e-20 104.8 75 65.3
A04p32470 Brassica napus HOM05D003294 ORTHO05D004060 2.0e-20 104.8 75 65.3
C04p70160 Brassica napus HOM05D003294 ORTHO05D004060 2.0e-20 104.8 75 65.3
BolC4t28519H Brassica oleracea HOM05D003294 ORTHO05D004060 2.0e-20 104.8 75 65.3
Gohir.A09G210500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 2.0e-20 104.8 75 68.0
Sp4g25280 Schrenkiella parvula HOM05D003294 ORTHO05D004060 2.0e-20 104.8 75 65.3
SpUn0921_0020 Schrenkiella parvula HOM05D003294 ORTHO05D004060 2.0e-20 104.8 75 65.3
Aqoxy2G04082 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 2.6e-20 104.4 67 70.1
CARHR138220 Cardamine hirsuta HOM05D003294 ORTHO05D004060 2.6e-20 104.4 75 64.0
Lsat_1_v5_gn_2_51461 Lactuca sativa HOM05D003294 ORTHO05D004060 2.6e-20 104.4 76 65.8
Lj6C64T13 Lonicera japonica HOM05D003294 ORTHO05D004060 2.6e-20 104.4 68 72.1
Actinidia35893 Actinidia chinensis HOM05D003294 ORTHO05D004060 3.4e-20 104.0 65 75.4
Cc03_g11110 Coffea canephora HOM05D003294 ORTHO05D004060 3.4e-20 104.0 65 72.3
A09p51590 Brassica napus HOM05D003294 ORTHO05D004060 4.4e-20 103.6 65 70.8
BraA09t40598Z Brassica rapa HOM05D003294 ORTHO05D004060 4.4e-20 103.6 65 70.8
Dinv44225 Davidia involucrata HOM05D003294 ORTHO05D004060 4.4e-20 103.6 65 75.4
vmacro00571 Vaccinium macrocarpon HOM05D003294 ORTHO05D004060 4.4e-20 103.6 68 66.2
CAN.G484.120 Capsicum annuum HOM05D003294 ORTHO05D004060 5.8e-20 103.2 70 65.7
THA.LOC104802293 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 5.8e-20 103.2 65 69.2
Gorai.006G227800 Gossypium raimondii HOM05D003294 ORTHO05D004060 7.6e-20 102.8 68 69.1
unitig_744.g24077 Utricularia gibba HOM05D003294 ORTHO05D004060 7.6e-20 102.8 66 69.7
Carub.0555s0001 Capsella rubella HOM05D003294 ORTHO05D004060 9.9e-20 102.4 75 61.3
HanXRQChr14g0437091 Helianthus annuus HOM05D003294 ORTHO05D004060 9.9e-20 102.4 72 68.1
PSO675G6401 Papaver somniferum HOM05D003294 ORTHO05D004060 9.9e-20 102.4 67 70.1
Sopen12g033530 Solanum pennellii HOM05D003294 ORTHO05D004060 9.9e-20 102.4 70 65.7
HanXRQChr03g0075661 Helianthus annuus HOM05D003294 ORTHO05D004060 1.3e-19 102.1 71 69.0
Peaxi162Scf00323g00620 Petunia axillaris HOM05D003294 ORTHO05D004060 1.3e-19 102.1 70 65.7
Solyc12g098780.2 Solanum lycopersicum HOM05D003294 ORTHO05D004060 1.3e-19 102.1 68 66.2
ECA238G3164 Erigeron canadensis HOM05D003294 ORTHO05D004060 1.7e-19 101.7 71 69.0
PGSC0003DMG400004676 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.7e-19 101.7 68 66.2
Duzib151G0954 Durio zibethinus HOM05D003294 ORTHO05D004060 2.2e-19 101.3 65 73.8
Gorai.005G018000 Gossypium raimondii HOM05D003294 ORTHO05D004060 2.2e-19 101.3 67 68.7
Lsat_1_v5_gn_2_50521 Lactuca sativa HOM05D003294 ORTHO05D004060 2.2e-19 101.3 76 64.5
Nitab4.5_0000383g0350 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.2e-19 101.3 70 67.1
Hund31331 Selenicereus undatus HOM05D003294 ORTHO05D004060 2.2e-19 101.3 69 66.7
Hund31332 Selenicereus undatus HOM05D003294 ORTHO05D004060 2.2e-19 101.3 69 66.7
Sopen12g033510 Solanum pennellii HOM05D003294 ORTHO05D004060 2.2e-19 101.3 68 66.2
MBI08_g20550_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.9e-19 100.9 67 67.2
THA.LOC104803514 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 2.9e-19 100.9 64 68.8
Gohir.D09G203900 Gossypium hirsutum HOM05D003294 ORTHO05D004060 3.8e-19 100.5 75 64.0
Solyc12g150132.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 3.8e-19 100.5 70 64.3
Sopen12g033520 Solanum pennellii HOM05D003294 ORTHO05D004060 3.8e-19 100.5 68 64.7
Lsat_1_v5_gn_2_51341 Lactuca sativa HOM05D003294 ORTHO05D004060 4.9e-19 100.1 76 63.2
Lsat_1_v5_gn_2_51640 Lactuca sativa HOM05D003294 ORTHO05D004060 4.9e-19 100.1 76 63.2
TWI15G0198 Tripterygium wilfordii HOM05D003294 ORTHO05D004060 4.9e-19 100.1 64 71.9
Sopen12g033540 Solanum pennellii HOM05D003294 ORTHO05D004060 6.4e-19 99.8 70 62.9
CAN.G484.121 Capsicum annuum HOM05D003294 ORTHO05D004060 8.4e-19 99.4 70 64.3
SpUn1318_0010 Schrenkiella parvula HOM05D003294 ORTHO05D004060 1.1e-18 99.0 65 67.7
CAN.G484.118 Capsicum annuum HOM05D003294 ORTHO05D004060 1.4e-18 98.6 70 62.9
Gohir.D02G014550 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.4e-18 98.6 65 69.2
PGSC0003DMG400004675 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.4e-18 98.6 67 68.7
Lj6A66G18 Lonicera japonica HOM05D003294 ORTHO05D004060 1.9e-18 98.2 70 65.7
Lju521A1G13 Lonicera japonica HOM05D003294 ORTHO05D004060 1.9e-18 98.2 70 65.7
Nitab4.5_0000383g0230 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.9e-18 98.2 67 68.7
Rhsim09G0035700 Rhododendron simsii HOM05D003294 ORTHO05D004060 2.4e-18 97.8 68 64.7
Gohir.A02G013500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 5.4e-18 96.7 65 67.7
unitig_578.g16248 Utricularia gibba HOM05D003294 ORTHO05D004060 7.1e-18 96.3 65 64.6
PGSC0003DMG400002364 Solanum tuberosum HOM05D003294 ORTHO05D004060 9.3e-18 95.9 65 66.2
Nitab4.5_0011287g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.6e-17 95.1 65 66.2
Sopen12g033500 Solanum pennellii HOM05D003294 ORTHO05D004060 1.6e-17 95.1 64 68.8
MSTRG.24590 Avicennia marina HOM05D003294 ORTHO05D004060 2.7e-17 94.4 71 63.4
Nitab4.5_0020026g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 4.6e-17 93.6 70 61.4
Solyc12g150131.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 4.6e-17 93.6 64 67.2
CAN.G484.117 Capsicum annuum HOM05D003294 ORTHO05D004060 1.3e-16 92.0 70 60.0
MBI08_g05500_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 6.6e-16 89.7 62 64.5
ATR0743G132 Amborella trichopoda HOM05D003294 ORTHO05D004060 2.5e-15 87.8 64 60.9
BraA05t19350Z Brassica rapa HOM05D003294 ORTHO05D004060 4.3e-15 87.0 52 73.1
Peaxi162Scf00323g00618 Petunia axillaris HOM05D003294 ORTHO05D004060 5.6e-15 86.7 68 57.4
Sopen12g018920 Solanum pennellii HOM05D003294 ORTHO05D004060 9.6e-15 85.9 68 55.9
Atru.chr3.1652 Acer truncatum HOM05D003294 ORTHO05D004060 8.1e-14 82.8 52 73.1
SEGI_35656 Sequoiadendron giganteum HOM05D003294 ORTHO05D004060 1.1e-13 82.4 72 54.2
Nn7g38030 Nelumbo nucifera HOM05D003294 ORTHO05D004060 1.4e-13 82.0 70 51.4
Zm00001eb144520 Zea mays HOM05D003294 ORTHO05D004060 1.4e-13 82.0 61 55.7
BraA03t11617Z Brassica rapa HOM05D003294 ORTHO05D004060 1.2e-12 79.0 50 70.0
BraA04t18713Z Brassica rapa HOM05D003294 ORTHO05D004060 1.2e-12 79.0 50 70.0
SGA_v2.0_scaffold406G51043 Striga asiatica HOM05D003294 ORTHO05D004060 1.2e-12 79.0 54 66.7
Os01g0899700 Oryza sativa ssp. japonica HOM05D003294 ORTHO05D004060 2.2e-11 74.7 60 50.0
Nitab4.5_0001049g0140 Nicotiana tabacum HOM05D003294 ORTHO05D004060 3.5e-09 67.4 48 56.2
Nitab4.5_0002908g0110 Nicotiana tabacum HOM05D003294 ORTHO05D017749 4.6e-09 67.0 39 69.2
CAN.G484.124 Capsicum annuum HOM05D003294 ORTHO05D017749 1.8e-08 65.1 39 69.2
Sabra14G0114800 Salix brachista HOM05D003294 ORTHO05D004060 3.0e-08 64.3 40 72.5
Lalb_Chr21g0307691 Lupinus albus HOM05D003294 ORTHO05D004060 6.7e-08 63.2 34 85.3
Medtr1g033100 Medicago truncatula HOM05D003294 ORTHO05D004060 2.8e-06 57.8 34 79.4
Nitab4.5_0000978g0120 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.8e-06 57.8 87 42.5
TPR.G6490 Trifolium pratense HOM05D003294 ORTHO05D004060 3.7e-06 57.4 34 79.4


User provided reference genes

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