Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025219 Lotus japonicus HOM05D005630 ORTHO05D006979 4.3e-75 284.6 150 100.0
Lj3g0020108 Lotus japonicus HOM05D005630 ORTHO05D006979 4.0e-57 224.9 153 79.7
TPR.G31501 Trifolium pratense HOM05D005630 ORTHO05D006979 1.9e-54 216.1 150 74.7
Ca_08945_v3 Cicer arietinum L. HOM05D005630 ORTHO05D006979 3.2e-54 215.3 150 76.0
Medtr6g088605 Medicago truncatula HOM05D005630 ORTHO05D006979 1.2e-53 213.4 150 72.7
Psat3g037680 Pisum sativum HOM05D005630 ORTHO05D006979 1.2e-53 213.4 150 74.0
Medtr7g103190 Medicago truncatula HOM05D005630 ORTHO05D006979 6.0e-53 211.1 147 73.5
TPR.G21379 Trifolium pratense HOM05D005630 ORTHO05D006979 1.9e-51 206.1 128 74.2
VMungo0464G1592 Vigna mungo HOM05D005630 ORTHO05D006979 2.5e-51 205.7 147 74.1
Glyma.01G008800 Glycine max HOM05D005630 ORTHO05D006979 3.3e-51 205.3 145 75.9
Glyma.16G077600 Glycine max HOM05D005630 ORTHO05D006979 3.3e-51 205.3 145 75.2
Cfa020874 Carpinus fangiana HOM05D005630 ORTHO05D006979 5.6e-51 204.5 148 73.0
Lalb_Chr01g0020901 Lupinus albus HOM05D005630 ORTHO05D006979 1.2e-50 203.4 121 79.3
VMungo0464G1149 Vigna mungo HOM05D005630 ORTHO05D006979 1.2e-50 203.4 128 71.9
Sed0022514 Sechium edule HOM05D005630 ORTHO05D006979 1.8e-49 199.5 151 68.9
Phvul.004G170400 Phaseolus vulgaris HOM05D005630 ORTHO05D006979 3.1e-49 198.7 147 72.8
RcHm_v2.0_Chr2g0086501 Rosa chinensis HOM05D005630 ORTHO05D006979 4.0e-49 198.4 150 70.0
CANSAT11G0524 Cannabis sativa HOM05D005630 ORTHO05D006979 5.2e-49 198.0 148 64.9
QL02p091555 Quercus lobata HOM05D005630 ORTHO05D006979 5.2e-49 198.0 151 70.2
ClCG10G005100 Citrullus lanatus HOM05D005630 ORTHO05D006979 9.0e-49 197.2 150 71.3
CiPaw.04G061600 Carya illinoinensis HOM05D005630 ORTHO05D006979 1.2e-48 196.8 128 71.1
TAR383G0582 Trochodendron aralioides HOM05D005630 ORTHO05D006979 1.5e-48 196.4 125 72.8
Sc08g0004950 Simmondsia chinensis HOM05D005630 ORTHO05D006979 7.6e-48 194.1 128 71.1
GSVIVG01001041001 Vitis vinifera HOM05D005630 ORTHO05D006979 1.3e-47 193.4 138 73.2
Haze_19305 Corylus avellana HOM05D005630 ORTHO05D006979 2.2e-47 192.6 142 71.8
TWI34G2008 Tripterygium wilfordii HOM05D005630 ORTHO05D006979 2.9e-47 192.2 128 70.3
Prupe.3G048400 Prunus persica HOM05D005630 ORTHO05D006979 6.4e-47 191.0 118 74.6
Prupe.7G253200 Prunus persica HOM05D005630 ORTHO05D006979 6.4e-47 191.0 109 79.8
FAN26G1041 Fragaria x ananassa HOM05D005630 ORTHO05D006979 8.4e-47 190.7 125 69.6
FAN28G1107 Fragaria x ananassa HOM05D005630 ORTHO05D006979 8.4e-47 190.7 125 69.6
Atru.chr7.200 Acer truncatum HOM05D005630 ORTHO05D006979 1.1e-46 190.3 148 62.2
FvH4_1g01540 Fragaria vesca HOM05D005630 ORTHO05D006979 1.9e-46 189.5 125 69.6
Hma1.2p1_1164F.1_g262820 Hydrangea macrophylla HOM05D005630 ORTHO05D006979 1.9e-46 189.5 148 68.9
Potri.018G113200 Populus trichocarpa HOM05D005630 ORTHO05D006979 1.9e-46 189.5 119 74.8
Nn8g40117 Nelumbo nucifera HOM05D005630 ORTHO05D006979 2.4e-46 189.1 129 71.3
Eucgr.H01228 Eucalyptus grandis HOM05D005630 ORTHO05D006979 4.2e-46 188.3 151 66.9
CSS0013521 Camellia sinensis var. sinensis HOM05D005630 ORTHO05D006979 5.4e-46 188.0 129 69.0
Solyc05g054990.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 5.4e-46 188.0 151 66.2
Actinidia03956 Actinidia chinensis HOM05D005630 ORTHO05D006979 9.3e-46 187.2 147 63.9
arahy.Tifrunner.gnm1.ann1.N9H741 Arachis hypogaea HOM05D005630 ORTHO05D006979 1.2e-45 186.8 144 70.8
Eucgr.H01921 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.2e-45 186.8 151 66.2
Rhsim03G0057400 Rhododendron simsii HOM05D005630 ORTHO05D006979 1.2e-45 186.8 118 72.9
PGR142G4039 Punica granatum HOM05D005630 ORTHO05D006979 1.6e-45 186.4 118 72.0
Sopen05g033450 Solanum pennellii HOM05D005630 ORTHO05D006979 2.1e-45 186.0 151 66.2
Nitab4.5_0000914g0010 Nicotiana tabacum HOM05D005630 ORTHO05D006979 2.7e-45 185.7 118 72.0
PGSC0003DMG400023408 Solanum tuberosum HOM05D005630 ORTHO05D006979 3.5e-45 185.3 148 67.6
Duzib128G0941 Durio zibethinus HOM05D005630 ORTHO05D006979 4.6e-45 184.9 128 69.5
Nitab4.5_0002880g0080 Nicotiana tabacum HOM05D005630 ORTHO05D006979 6.0e-45 184.5 118 71.2
Psat5g026240 Pisum sativum HOM05D005630 ORTHO05D006979 6.0e-45 184.5 151 69.5
Gohir.A05G280400 Gossypium hirsutum HOM05D005630 ORTHO05D006979 7.8e-45 184.1 119 72.3
Gohir.D05G282200 Gossypium hirsutum HOM05D005630 ORTHO05D006979 7.8e-45 184.1 119 72.3
Gorai.009G295600 Gossypium raimondii HOM05D005630 ORTHO05D006979 7.8e-45 184.1 119 72.3
MD02G1012200 Malus domestica HOM05D005630 ORTHO05D006979 7.8e-45 184.1 121 70.2
Manes.03G015700 Manihot esculenta HOM05D005630 ORTHO05D006979 7.8e-45 184.1 118 72.0
Nitab4.5_0005975g0020 Nicotiana tabacum HOM05D005630 ORTHO05D006979 1.0e-44 183.7 133 66.9
COL.COLO4_35448 Corchorus olitorius HOM05D000321 ORTHO05D000204 1.3e-44 183.3 119 69.7
EL10Ac4g09637 Beta vulgaris HOM05D005630 ORTHO05D006979 1.7e-44 183.0 147 60.5
MD15G1158000 Malus domestica HOM05D005630 ORTHO05D006979 1.7e-44 183.0 123 69.9
Oeu028785.1 Olea europaea HOM05D005630 ORTHO05D006979 3.0e-44 182.2 149 63.8
MELO3C014176.2 Cucumis melo HOM05D005630 ORTHO05D006979 3.9e-44 181.8 154 65.6
CsaV3_3G004770 Cucumis sativus L. HOM05D005630 ORTHO05D006979 3.9e-44 181.8 154 64.9
HanXRQChr10g0314501 Helianthus annuus HOM05D005630 ORTHO05D006979 1.1e-43 180.3 128 64.1
Sopen02g029090 Solanum pennellii HOM05D005630 ORTHO05D006979 1.1e-43 180.3 118 69.5
CAN.G1505.19 Capsicum annuum HOM05D005630 ORTHO05D006979 1.5e-43 179.9 148 64.9
Peaxi162Scf00083g01117 Petunia axillaris HOM05D005630 ORTHO05D006979 2.5e-43 179.1 145 66.2
Nitab4.5_0003965g0050 Nicotiana tabacum HOM05D005630 ORTHO05D006979 3.3e-43 178.7 118 68.6
CAN.G1465.11 Capsicum annuum HOM05D005630 ORTHO05D006979 4.3e-43 178.3 146 65.8
Cc06_g16720 Coffea canephora HOM05D005630 ORTHO05D006979 1.3e-42 176.8 109 71.6
Solyc02g084380.3 Solanum lycopersicum HOM05D005630 ORTHO05D006979 1.3e-42 176.8 119 68.1
Lsat_1_v5_gn_5_90640 Lactuca sativa HOM05D005630 ORTHO05D006979 2.8e-42 175.6 129 66.7
Thhalv10021733m.g Eutrema salsugineum HOM05D005630 ORTHO05D006979 3.6e-42 175.3 124 66.1
THA.LOC104826572 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 3.6e-42 175.3 149 59.1
MSTRG.19630 Avicennia marina HOM05D005630 ORTHO05D006979 8.1e-42 174.1 144 61.8
DCAR_019353 Daucus carota HOM05D000452 ORTHO05D000647 2.4e-41 172.6 116 64.7
FAN23G2038 Fragaria x ananassa HOM05D005630 ORTHO05D006979 4.0e-41 171.8 173 50.9
THA.LOC104815401 Tarenaya hassleriana HOM05D005630 ORTHO05D006979 4.0e-41 171.8 129 65.1
Actinidia37787 Actinidia chinensis HOM05D005630 ORTHO05D006979 5.3e-41 171.4 145 66.2
BolC3t17269H Brassica oleracea HOM05D005630 ORTHO05D006979 6.9e-41 171.0 123 64.2
Aa31LG8G5570 Aethionema arabicum HOM05D005630 ORTHO05D006979 1.2e-40 170.2 125 65.6
C03p49710 Brassica napus HOM05D005630 ORTHO05D006979 1.2e-40 170.2 123 64.2
ECA234G3390 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.2e-40 170.2 102 73.5
BcaC05g28577 Brassica carinata HOM05D005630 ORTHO05D006979 1.5e-40 169.9 102 74.5
A05p30870 Brassica napus HOM05D005630 ORTHO05D006979 1.5e-40 169.9 102 74.5
C05p46800 Brassica napus HOM05D005630 ORTHO05D006979 1.5e-40 169.9 102 74.5
BolC5t33410H Brassica oleracea HOM05D005630 ORTHO05D006979 1.5e-40 169.9 102 74.5
BraA05t21929Z Brassica rapa HOM05D005630 ORTHO05D006979 1.5e-40 169.9 102 74.5
BcaB06g25926 Brassica carinata HOM05D005630 ORTHO05D006979 2.0e-40 169.5 123 65.0
PSO210G0346 Papaver somniferum HOM05D005630 ORTHO05D006979 2.0e-40 169.5 104 74.0
PSO210G6044 Papaver somniferum HOM05D005630 ORTHO05D006979 2.0e-40 169.5 104 74.0
Carub.0003s1855 Capsella rubella HOM05D005630 ORTHO05D006979 2.6e-40 169.1 102 73.5
CARHR094150 Cardamine hirsuta HOM05D005630 ORTHO05D006979 2.6e-40 169.1 125 64.8
BcaB04g19003 Brassica carinata HOM05D005630 ORTHO05D006979 3.4e-40 168.7 123 65.0
BraA03t13240Z Brassica rapa HOM05D005630 ORTHO05D006979 3.4e-40 168.7 123 64.2
Ciclev10009802m.g Citrus clementina HOM05D005630 ORTHO05D006979 3.4e-40 168.7 150 58.7
Sp3g16800 Schrenkiella parvula HOM05D005630 ORTHO05D006979 3.4e-40 168.7 124 63.7
AL3G32110 Arabidopsis lyrata HOM05D005630 ORTHO05D006979 7.6e-40 167.5 102 73.5
AT3G18760 Arabidopsis thaliana HOM05D005630 ORTHO05D006979 7.6e-40 167.5 102 73.5
vmacro07529 Vaccinium macrocarpon HOM05D005630 ORTHO05D006979 7.6e-40 167.5 98 75.5
SGA_v2.0_scaffold336G49163 Striga asiatica HOM05D005630 ORTHO05D006979 9.9e-40 167.2 123 65.0
Migut.J01281 Erythranthe guttata HOM05D005630 ORTHO05D006979 4.9e-39 164.9 109 67.0
SalBow1G1736 Salvia bowleyana HOM05D005630 ORTHO05D006979 2.4e-38 162.5 102 71.6
unitig_46.g18303 Utricularia gibba HOM05D005630 ORTHO05D006979 2.7e-37 159.1 118 61.9
Os01g0220300 Oryza sativa ssp. japonica HOM05D005630 ORTHO05D006979 3.5e-37 158.7 125 60.8
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 3.5e-37 158.7 108 63.9
A03p40820 Brassica napus HOM05D005630 ORTHO05D006979 1.3e-36 156.8 123 61.0
Zm00001eb119770 Zea mays HOM05D005630 ORTHO05D006979 3.9e-36 155.2 119 62.2
MBI07_g35858_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 6.7e-36 154.5 87 80.5
FAN19G2317 Fragaria x ananassa HOM05D005630 ORTHO05D006979 1.1e-35 153.7 125 60.0
Thecc.10G171800 Theobroma cacao HOM05D005630 ORTHO05D006979 2.5e-35 152.5 110 66.4
Dinv41416 Davidia involucrata HOM05D005630 ORTHO05D006979 2.8e-34 149.1 129 61.2
Oeu040774.1 Olea europaea HOM05D005630 ORTHO05D006979 4.8e-34 148.3 161 49.1
HPP92_008634 Vanilla planifolia HOM05D005630 ORTHO05D006979 1.4e-33 146.7 118 58.5
CDE02G3819 Ceratophyllum demersum HOM05D005630 ORTHO05D006979 1.8e-33 146.4 84 79.8
Ah.01g003710 Amaranthus hybridus HOM05D005630 ORTHO05D006979 2.4e-33 146.0 107 64.5
unitig_48.g30288 Utricularia gibba HOM05D005630 ORTHO05D006979 3.0e-28 129.0 86 64.0
Eucgr.B02192 Eucalyptus grandis HOM05D005630 ORTHO05D006979 2.5e-27 125.9 78 70.5
Pp3c3_21570 Physcomitrium patens HOM05D005630 ORTHO05D006979 5.6e-27 124.8 101 52.5
AagrBONN_evm.TU.Sc2ySwM_117.2919 Anthoceros agrestis HOM05D005630 ORTHO05D006979 2.4e-25 119.4 101 51.5
SMO146G0230 Selaginella moellendorffii HOM05D005630 ORTHO05D006979 1.3e-23 113.6 101 48.5
Mapoly0179s0002 Marchantia polymorpha HOM05D005630 ORTHO05D006979 1.2e-21 107.1 97 48.5
Lj7A451T27 Lonicera japonica HOM05D005630 ORTHO05D006979 4.6e-21 105.1 61 75.4
CBR_g37184 Chara braunii HOM05D005630 ORTHO05D006979 1.0e-20 104.0 98 51.0
SGA_v2.0_scaffold416G51224 Striga asiatica HOM05D005630 ORTHO05D006979 1.0e-20 104.0 61 73.8
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 2.5e-19 99.4 86 60.5
AUR62001080 Chenopodium quinoa HOM05D005630 ORTHO05D006979 3.7e-18 95.5 61 67.2
AUR62004880 Chenopodium quinoa HOM05D005630 ORTHO05D006979 2.4e-17 92.8 61 67.2
Eucgr.L01073 Eucalyptus grandis HOM05D005630 ORTHO05D006979 1.2e-16 90.5 92 63.0
SEGI_16423 Sequoiadendron giganteum HOM05D005630 ORTHO05D006979 1.5e-16 90.1 85 48.2
TPR.G10852 Trifolium pratense HOM05D005630 ORTHO05D006979 1.9e-14 83.2 49 73.5
ATR1096G006 Amborella trichopoda HOM05D005630 ORTHO05D006979 4.2e-14 82.0 84 56.0
MD16G1239100 Malus domestica HOM05D005630 ORTHO05D006979 7.2e-14 81.3 57 61.4
MBI07_g26347_MAGBIO Magnolia biondii HOM05D005630 ORTHO05D006979 1.6e-13 80.1 88 55.7
Nn2g11495 Nelumbo nucifera HOM05D005630 ORTHO05D006979 2.1e-13 79.7 65 61.5
Medtr5g037160 Medicago truncatula HOM05D005630 ORTHO05D000782 2.8e-10 69.3 40 82.5
AUR62039003 Chenopodium quinoa HOM05D005630 ORTHO05D006979 1.4e-09 67.0 41 63.4
MCO04G088 Micromonas commoda HOM05D005630 ORTHO05D006979 2.0e-08 63.2 109 30.3
Cre12.g558000 Chlamydomonas reinhardtii HOM05D005630 ORTHO05D006979 3.4e-08 62.4 96 32.3
SalBow1G6627 Salvia bowleyana HOM05D005630 ORTHO05D006979 1.4e-06 57.0 36 66.7


User provided reference genes

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