Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 4.3e-187 657.9 352 100.0
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 3.3e-134 482.3 362 75.1
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 7.8e-128 461.1 363 69.4
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 5.1e-127 458.4 362 69.6
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 7.3e-126 454.5 358 71.5
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 4.7e-125 451.8 370 71.6
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 9.9e-123 444.1 362 68.2
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 1.1e-121 440.7 360 68.1
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 1.7e-119 433.3 361 69.5
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 8.1e-109 397.9 343 68.5
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 7.6e-107 391.3 359 61.0
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 1.1e-105 387.5 325 69.8
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 6.6e-103 378.3 352 59.9
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 3.4e-99 365.9 359 56.8
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 9.9e-99 364.4 359 56.8
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.9e-97 360.1 359 56.3
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 2.1e-96 356.7 359 56.0
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 6.0e-96 355.1 343 57.1
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.3e-93 347.4 363 54.8
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 2.0e-91 340.1 321 59.2
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 3.4e-91 339.3 352 57.1
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 7.1e-89 331.6 362 53.9
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 4.6e-88 328.9 356 53.4
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 6.0e-88 328.6 367 52.9
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 1.1e-86 324.3 320 58.1
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 4.3e-86 322.4 342 56.1
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 2.1e-85 320.1 362 51.1
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 2.1e-85 320.1 360 52.2
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 3.7e-85 319.3 350 56.6
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 3.7e-85 319.3 350 56.6
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 2.6e-83 313.2 366 49.7
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 1.7e-82 310.5 352 51.7
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 8.4e-82 308.1 319 52.7
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 1.1e-81 307.8 319 52.7
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 3.2e-81 306.2 319 52.4
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 4.2e-81 305.8 361 50.4
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 1.2e-80 304.3 312 57.4
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 1.0e-79 301.2 356 49.7
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 7.4e-78 295.0 357 50.4
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 1.6e-77 293.9 346 52.6
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 2.2e-77 293.5 356 49.7
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 1.1e-76 291.2 358 47.2
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 5.3e-76 288.9 307 54.4
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 1.2e-75 287.7 360 47.5
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 5.9e-75 285.4 359 46.5
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 2.2e-74 283.5 348 48.6
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 1.4e-73 280.8 360 44.4
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 1.9e-73 280.4 357 47.6
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 4.6e-72 275.8 348 49.1
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 3.0e-71 273.1 348 44.0
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 6.7e-71 271.9 350 44.3
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 4.8e-69 265.8 265 57.4
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 1.4e-68 264.2 373 44.8
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 5.3e-68 262.3 371 43.9
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 5.3e-68 262.3 350 43.1
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 6.9e-68 261.9 312 48.1
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 2.0e-67 260.4 273 56.0
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 8.5e-66 255.0 331 45.0
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 1.1e-65 254.6 326 47.5
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 4.2e-65 252.7 343 44.6
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 9.4e-65 251.5 254 59.4
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 1.2e-64 251.1 254 60.2
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 1.6e-64 250.8 331 46.5
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 1.6e-64 250.8 357 45.7
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 3.0e-63 246.5 314 47.5
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 3.7e-61 239.6 290 49.3
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 6.3e-61 238.8 320 45.9
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 5.9e-59 232.3 343 41.7
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 5.9e-59 232.3 294 48.0
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 7.7e-59 231.9 278 51.1
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 2.5e-57 226.9 332 44.3
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 9.4e-57 224.9 324 40.1
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 1.6e-56 224.2 359 39.8
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 8.0e-56 221.9 347 45.0
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 1.4e-55 221.1 275 49.5
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 7.0e-52 208.8 253 48.2
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 9.1e-52 208.4 327 43.1
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 1.6e-51 207.6 359 40.7
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 6.5e-50 202.2 203 59.6
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 1.4e-47 194.5 266 44.4
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 2.4e-44 183.7 214 52.3
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 1.6e-43 181.0 216 49.5
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 4.5e-43 179.5 359 35.1
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 8.5e-42 175.3 351 35.3
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 3.6e-40 169.9 338 36.7
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 1.4e-39 167.9 350 35.4
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 5.2e-39 166.0 338 36.4
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 3.4e-38 163.3 345 36.5
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 4.4e-38 162.9 346 36.7
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 1.4e-36 157.9 354 33.6
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 1.8e-36 157.5 300 38.3
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 5.4e-36 156.0 341 36.4
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 5.4e-36 156.0 342 36.5
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 5.4e-36 156.0 342 36.5
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 7.0e-36 155.6 141 61.0
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 1.2e-35 154.8 342 36.3
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 1.6e-35 154.5 341 35.8
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 1.7e-34 151.0 341 35.8
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 1.7e-34 151.0 342 36.8
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 3.8e-34 149.8 342 36.8
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 1.3e-29 134.8 275 37.8
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 8.3e-29 132.1 149 55.0
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 5.2e-23 112.8 292 28.4
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 2.6e-22 110.5 268 29.9
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 2.2e-21 107.5 234 35.0
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 1.9e-20 104.4 260 30.8
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 1.9e-20 104.4 275 29.1
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 5.4e-20 102.8 100 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 3.5e-19 100.1 88 58.0
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 3.9e-18 96.7 276 28.6
MD16G1286500 Malus domestica HOM05D006619 ORTHO05D008351 5.0e-18 96.3 131 44.3
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 4.3e-17 93.2 270 29.3
Hund28917 Selenicereus undatus HOM05D006619 ORTHO05D008351 1.1e-12 78.6 114 40.4
Hund28918 Selenicereus undatus HOM05D006619 ORTHO05D008351 1.1e-12 78.6 114 40.4
Nn1g09286 Nelumbo nucifera HOM05D006619 ORTHO05D008351 1.2e-11 75.1 80 46.2
HanXRQChr04g0096591 Helianthus annuus HOM05D006619 ORTHO05D008351 3.9e-10 70.1 75 48.0


User provided reference genes

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