Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 4.3e-239 830.9 407 100.0
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 1.5e-191 672.9 408 81.1
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 8.3e-190 667.2 409 83.1
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 2.8e-185 652.1 410 78.5
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.7e-185 651.4 412 78.4
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 3.0e-184 648.7 409 78.5
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 9.2e-181 637.1 411 76.9
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 7.8e-180 634.0 411 76.6
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 2.2e-174 615.9 407 74.7
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 2.2e-166 589.3 385 76.6
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 1.4e-165 586.6 380 74.2
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 3.5e-164 582.0 401 71.1
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 9.5e-162 573.9 403 70.7
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.8e-161 572.4 385 71.2
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 4.7e-161 571.6 372 73.9
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 1.1e-160 570.5 404 68.8
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 4.0e-160 568.5 402 70.4
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.4e-159 565.5 402 68.9
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 3.4e-159 565.5 404 68.1
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 5.8e-159 564.7 410 67.6
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.3e-158 563.5 406 68.0
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.8e-158 562.0 410 67.1
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 8.4e-158 560.8 381 71.1
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 8.4e-158 560.8 404 68.1
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 3.2e-157 558.9 400 67.8
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.2e-157 558.5 404 66.6
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 1.6e-156 556.6 404 66.1
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 2.7e-156 555.8 378 72.0
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 3.5e-156 555.4 378 71.4
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 3.5e-156 555.4 405 67.9
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 7.8e-156 554.3 404 65.8
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.3e-155 553.5 404 65.8
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.0e-155 552.4 386 69.7
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 6.6e-155 551.2 407 66.1
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.1e-154 550.4 386 69.4
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 1.5e-154 550.1 407 66.6
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.5e-154 550.1 397 66.2
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 1.9e-154 549.7 372 72.8
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 3.3e-154 548.9 401 68.3
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 5.6e-154 548.1 371 70.9
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.6e-154 548.1 386 68.9
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 2.8e-153 545.8 408 66.2
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 1.1e-152 543.9 408 66.9
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.8e-152 543.1 435 64.1
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 2.4e-152 542.7 376 70.2
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.4e-152 542.7 376 70.5
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 3.1e-152 542.3 369 71.0
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.1e-152 542.3 387 69.8
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.7e-150 536.6 380 68.4
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 8.4e-150 534.3 380 68.2
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 1.1e-149 533.9 368 69.8
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 1.9e-149 533.1 390 65.1
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.4e-149 532.7 379 66.5
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 1.2e-148 530.4 385 67.3
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 6.0e-148 528.1 380 66.8
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 7.8e-148 527.7 381 65.9
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.0e-147 527.3 380 67.1
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 1.3e-147 526.9 380 67.6
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.7e-147 526.6 379 66.0
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.7e-147 526.6 383 66.6
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.3e-147 526.2 380 67.4
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 2.3e-147 526.2 383 67.1
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 5.1e-147 525.0 382 67.5
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 6.6e-147 524.6 372 68.5
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 5.6e-146 521.5 372 68.3
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 7.3e-146 521.2 385 66.5
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 2.1e-145 519.6 411 63.0
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 2.8e-145 519.2 381 65.6
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 3.6e-145 518.8 380 65.8
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 3.6e-145 518.8 380 65.8
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 4.8e-145 518.5 390 63.3
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 8.1e-145 517.7 380 66.6
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 1.1e-144 517.3 379 64.6
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.4e-144 516.9 377 65.8
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.4e-144 516.9 408 62.0
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.8e-144 516.5 379 65.7
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 2.4e-144 516.2 391 63.7
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 2.4e-144 516.2 379 65.4
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 2.4e-144 516.2 371 66.8
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 9.0e-144 514.2 379 65.7
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 9.0e-144 514.2 379 65.7
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.5e-143 513.5 388 63.9
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 1.5e-143 513.5 380 65.8
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 2.6e-143 512.7 379 64.9
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 9.9e-143 510.8 372 65.6
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.7e-142 510.0 394 66.0
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 1.4e-141 506.9 384 62.8
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 7.9e-140 501.1 309 79.3
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 7.9e-140 501.1 377 64.5
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 1.0e-139 500.7 434 56.9
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 2.3e-139 499.6 309 79.0
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.3e-139 499.6 377 64.5
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 1.5e-138 496.9 383 65.3
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 9.6e-138 494.2 384 62.5
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.1e-137 493.0 386 61.1
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.1e-137 493.0 404 61.1
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 6.2e-137 491.5 391 61.6
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 1.1e-136 490.7 371 63.9
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.3e-134 483.8 395 61.0
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 4.9e-134 481.9 384 62.0
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.9e-133 479.9 370 63.2
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.0e-131 472.6 388 59.3
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.9e-131 472.2 388 59.3
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 6.2e-129 464.9 393 58.5
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 8.2e-129 464.5 381 62.7
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 6.9e-128 461.5 364 61.5
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 2.9e-126 456.1 262 84.4
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 7.1e-125 451.4 400 56.5
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.0e-123 447.6 394 57.9
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 3.9e-123 445.7 252 84.5
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 6.7e-123 444.9 333 65.2
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 8.7e-123 444.5 293 73.0
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 2.5e-117 426.4 380 55.5
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 8.2e-113 411.4 395 53.2
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 4.1e-112 409.1 378 54.8
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 2.0e-111 406.8 606 40.9
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 3.8e-110 402.5 380 55.8
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.6e-108 396.0 390 52.3
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 4.4e-106 389.0 383 49.6
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 7.2e-101 371.7 356 55.1
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 6.7e-99 365.2 372 49.5
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 7.4e-98 361.7 369 50.1
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 3.7e-97 359.4 265 62.6
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 3.1e-96 356.3 239 69.9
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 5.9e-95 352.1 378 50.3
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 2.9e-94 349.7 244 66.0
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 7.2e-93 345.1 253 63.2
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 2.6e-90 336.7 252 60.7
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 4.4e-90 335.9 400 45.5
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.7e-89 334.0 244 62.3
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 3.7e-89 332.8 266 63.2
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 7.7e-87 325.1 250 64.8
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.7e-82 308.9 260 62.7
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.1e-80 304.7 193 75.1
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 3.5e-79 299.7 360 46.7
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 8.9e-75 285.0 158 86.7
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.1e-59 235.0 289 50.9
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.0e-54 216.9 215 50.7
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 1.2e-52 211.5 158 67.1
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 3.9e-46 189.9 235 46.4
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.6e-45 186.0 128 70.3
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 2.0e-42 177.6 405 35.1
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 1.1e-40 171.8 115 69.6
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.4e-35 154.1 102 67.6
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 7.6e-34 149.1 164 48.8
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 8.4e-33 145.6 171 51.5
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 3.5e-31 140.2 365 29.6
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.4e-27 128.3 269 32.3
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 5.1e-22 109.8 102 52.0
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 2.5e-21 107.5 70 64.3
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 4.8e-20 103.2 93 54.8
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 2.6e-18 97.4 93 52.7
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 2.6e-18 97.4 287 27.2
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 2.9e-17 94.0 93 51.6
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 6.9e-11 72.8 84 41.7
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.0e-09 68.9 52 57.7
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 6.5e-09 66.2 63 54.0
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-08 65.5 55 54.5
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 7.1e-08 62.8 52 48.1


User provided reference genes

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