Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0024513 Lotus japonicus HOM05D052308 ORTHO05D015702 1.9e-68 262.3 123 100.0
Lj1g0008908 Lotus japonicus HOM05D052308 ORTHO05D015702 3.2e-28 128.6 101 68.3
Lj2g0011920 Lotus japonicus HOM05D002644 ORTHO05D003267 5.7e-25 117.9 110 45.5
Ca_20463_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.8e-18 96.3 107 39.3
Ca_12022_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.9e-18 95.1 109 37.6
Ca_02759_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.7e-18 94.4 107 39.3
Ca_03880_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 6.7e-18 94.4 108 37.0
Ca_04791_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 8.8e-18 94.0 107 39.3
Ca_18593_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 8.8e-18 94.0 107 39.3
Ca_23902_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 8.8e-18 94.0 107 39.3
Medtr2g060850 Medicago truncatula HOM05D002644 ORTHO05D000592 8.8e-18 94.0 115 36.5
SGA_v2.0_scaffold191G40501 Striga asiatica HOM05D002644 ORTHO05D003267 8.8e-18 94.0 109 42.2
Ca_23926_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.7e-17 91.3 107 38.3
Ca_03334_v3 Cicer arietinum L. HOM05D002644 ORTHO05D000592 2.2e-16 89.4 107 37.4
Ca_19281_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.2e-16 89.4 107 37.4
Ca_12950_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.8e-16 89.0 107 35.5
Ca_13592_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.1e-15 87.0 107 36.4
Ca_19885_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.1e-15 87.0 108 35.2
Ca_05353_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.4e-14 82.0 70 45.7
Ca_06535_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.0e-13 80.5 70 45.7
Ca_07064_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.0e-13 80.5 90 41.1
Ca_11988_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 1.3e-13 80.1 70 45.7
Ca_04527_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.8e-13 78.6 92 38.0
Medtr0623s0020 Medicago truncatula HOM05D002644 ORTHO05D015702 3.8e-13 78.6 85 37.6
Ca_02486_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 8.5e-13 77.4 70 44.3
Ca_23714_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 8.5e-13 77.4 107 34.6
Medtr4g043785 Medicago truncatula HOM05D002644 ORTHO05D018018 1.4e-12 76.6 91 37.4
TPR.G17991 Trifolium pratense HOM05D002644 ORTHO05D000233 1.9e-12 76.3 87 33.3
Ca_05034_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.2e-12 75.5 93 37.6
Ca_05401_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 9.4e-12 73.9 70 42.9
Ca_19145_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.7e-11 72.4 70 41.4
Ca_20176_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 7.9e-11 70.9 84 39.3
Medtr0089s0100 Medicago truncatula HOM05D002644 ORTHO05D015702 1.0e-10 70.5 77 33.8
VMungo0647G1939 Vigna mungo HOM05D002644 ORTHO05D003267 1.4e-10 70.1 70 45.7
AUR62026574 Chenopodium quinoa HOM05D002644 ORTHO05D000233 1.8e-10 69.7 93 34.4
Ca_20656_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.3e-10 69.3 84 38.1
Medtr3g036000 Medicago truncatula HOM05D002644 ORTHO05D015702 2.3e-10 69.3 77 32.5
MELO3C034193.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.0e-10 68.9 94 39.4
Ca_27010_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.9e-10 68.6 50 52.0
Medtr6g059800 Medicago truncatula HOM05D002644 ORTHO05D015702 6.7e-10 67.8 77 32.5
Ca_02190_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 8.8e-10 67.4 59 47.5
MELO3C035055.2 Cucumis melo HOM05D000004 ORTHO05D000002 8.8e-10 67.4 100 35.0
Medtr8g064080 Medicago truncatula HOM05D002644 ORTHO05D015702 1.1e-09 67.0 84 32.1
Sed0026544 Sechium edule HOM05D000539 ORTHO05D000592 3.3e-09 65.5 66 40.9
MELO3C033140.2 Cucumis melo HOM05D000539 ORTHO05D000592 9.7e-09 63.9 86 39.5
ECA236G3736 Erigeron canadensis HOM05D000539 ORTHO05D000233 9.7e-09 63.9 124 34.7
MELO3C034305.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.3e-08 63.5 86 38.4
Lsat_1_v5_gn_4_34001 Lactuca sativa HOM05D000539 ORTHO05D000592 1.7e-08 63.2 111 31.5
Sed0024905 Sechium edule HOM05D000539 ORTHO05D000592 1.7e-08 63.2 94 31.9
Ca_19789_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.8e-08 62.4 48 50.0
Ca_27618_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 2.8e-08 62.4 59 40.7
MELO3C027818.2 Cucumis melo HOM05D007110 ORTHO05D000592 2.8e-08 62.4 90 37.8
CANSAT35G0077 Cannabis sativa HOM05D000539 ORTHO05D000592 3.7e-08 62.0 71 36.6
CANSAT64G2767 Cannabis sativa HOM05D000539 ORTHO05D000592 3.7e-08 62.0 71 36.6
Aqoxy6G01916 Aquilegia oxysepala HOM05D000539 ORTHO05D000233 4.8e-08 61.6 71 40.8
EL10Ac4g07898 Beta vulgaris HOM05D009341 ORTHO05D011542 6.3e-08 61.2 103 27.2
MELO3C034519.2 Cucumis melo HOM05D007110 ORTHO05D000592 6.3e-08 61.2 106 34.0
Medtr0623s0010 Medicago truncatula HOM05D002644 ORTHO05D015702 6.3e-08 61.2 97 29.9
Medtr5g045640 Medicago truncatula HOM05D002644 ORTHO05D015702 6.3e-08 61.2 77 29.9
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 6.3e-08 61.2 100 29.0
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 6.3e-08 61.2 100 29.0
Sed0007296 Sechium edule HOM05D000539 ORTHO05D000592 6.3e-08 61.2 90 33.3
EL10Ac2g03395 Beta vulgaris HOM05D007123 ORTHO05D000233 8.2e-08 60.8 94 34.0
Ciclev10012877m.g Citrus clementina HOM05D000539 ORTHO05D000592 8.2e-08 60.8 67 37.3
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 8.2e-08 60.8 78 33.3
ECA240G4466 Erigeron canadensis HOM05D000539 ORTHO05D000233 8.2e-08 60.8 119 30.3
MELO3C028238.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.1e-07 60.5 80 38.8
Medtr6g045377 Medicago truncatula HOM05D002644 ORTHO05D015702 1.1e-07 60.5 52 44.2
Prupe.2G062000 Prunus persica HOM05D000539 ORTHO05D000592 1.1e-07 60.5 107 30.8
MELO3C035035.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.4e-07 60.1 106 34.0
Rhsim03G0043700 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.4e-07 60.1 73 32.9
Rhsim08G0058500 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.4e-07 60.1 73 32.9
Rhsim08G0058700 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.4e-07 60.1 73 32.9
RhsimUnG0040200 Rhododendron simsii HOM05D000539 ORTHO05D000592 1.4e-07 60.1 73 32.9
RcHm_v2.0_Chr1g0318241 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-07 60.1 96 32.3
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 1.4e-07 60.1 92 30.4
EL10Ac7g17152 Beta vulgaris HOM05D007123 ORTHO05D010541 1.8e-07 59.7 94 34.0
CsaV3_6G018870 Cucumis sativus L. HOM05D000539 ORTHO05D000592 1.8e-07 59.7 106 31.1
MELO3C033511.2 Cucumis melo HOM05D000539 ORTHO05D000592 2.4e-07 59.3 72 40.3
Medtr0109s0150 Medicago truncatula HOM05D002644 ORTHO05D018018 2.4e-07 59.3 55 40.0
Medtr7g073070 Medicago truncatula HOM05D002644 ORTHO05D015702 2.4e-07 59.3 65 32.3
Sed0014995 Sechium edule HOM05D000539 ORTHO05D000592 2.4e-07 59.3 73 35.6
EL10As1g23041 Beta vulgaris HOM05D007123 ORTHO05D010541 3.1e-07 58.9 93 32.3
MELO3C030224.2 Cucumis melo HOM05D007110 ORTHO05D000592 3.1e-07 58.9 105 34.3
Sed0016665 Sechium edule HOM05D000539 ORTHO05D000592 3.1e-07 58.9 63 34.9
Sed0019626 Sechium edule HOM05D000539 ORTHO05D000592 3.1e-07 58.9 63 34.9
CANSAT54G1430 Cannabis sativa HOM05D000539 ORTHO05D000592 4.1e-07 58.5 74 35.1
Ca_06949_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 4.1e-07 58.5 66 37.9
ClCG07G011140 Citrullus lanatus HOM05D000539 ORTHO05D000233 4.1e-07 58.5 78 32.1
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 4.1e-07 58.5 101 32.7
MELO3C034970.2 Cucumis melo HOM05D007110 ORTHO05D000592 4.1e-07 58.5 106 32.1
Prupe.1G028600 Prunus persica HOM05D000539 ORTHO05D000592 4.1e-07 58.5 111 32.4
Prupe.2G011100 Prunus persica HOM05D000539 ORTHO05D000592 4.1e-07 58.5 111 32.4
Prupe.2G155700 Prunus persica HOM05D000539 ORTHO05D000233 4.1e-07 58.5 98 34.7
Prupe.2G157500 Prunus persica HOM05D000539 ORTHO05D000592 4.1e-07 58.5 111 32.4
Prupe.3G153900 Prunus persica HOM05D000539 ORTHO05D000592 4.1e-07 58.5 111 32.4
Prupe.6G142900 Prunus persica HOM05D000539 ORTHO05D000592 4.1e-07 58.5 111 32.4
Prupe.7G008900 Prunus persica HOM05D000539 ORTHO05D000592 4.1e-07 58.5 111 32.4
Prupe.7G029100 Prunus persica HOM05D000539 ORTHO05D000592 4.1e-07 58.5 111 32.4
RcHm_v2.0_Chr5g0066141 Rosa chinensis HOM05D000539 ORTHO05D000592 4.1e-07 58.5 97 33.0
Sed0011271 Sechium edule HOM05D000539 ORTHO05D000592 4.1e-07 58.5 63 33.3
Atru.chr7.1246 Acer truncatum HOM05D000539 ORTHO05D000592 5.3e-07 58.2 81 38.3
Ca_03261_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 5.3e-07 58.2 61 41.0
MELO3C027996.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.3e-07 58.2 86 37.2
MELO3C029153.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.3e-07 58.2 86 37.2
MELO3C033645.2 Cucumis melo HOM05D000539 ORTHO05D000592 5.3e-07 58.2 94 35.1
Lsat_1_v5_gn_2_7701 Lactuca sativa HOM05D000539 ORTHO05D000592 5.3e-07 58.2 110 30.0
Prupe.1G036300 Prunus persica HOM05D000539 ORTHO05D000592 5.3e-07 58.2 98 34.7
Prupe.1G397800 Prunus persica HOM05D000539 ORTHO05D000592 5.3e-07 58.2 98 34.7
Prupe.2G053400 Prunus persica HOM05D000539 ORTHO05D000592 5.3e-07 58.2 98 34.7
Prupe.2G089500 Prunus persica HOM05D000539 ORTHO05D000592 5.3e-07 58.2 98 34.7
Prupe.4G254700 Prunus persica HOM05D000539 ORTHO05D000233 5.3e-07 58.2 98 34.7
Prupe.5G051700 Prunus persica HOM05D000539 ORTHO05D000592 5.3e-07 58.2 98 34.7
Prupe.6G180100 Prunus persica HOM05D000539 ORTHO05D000592 5.3e-07 58.2 98 34.7
Prupe.8G054500 Prunus persica HOM05D000539 ORTHO05D000592 5.3e-07 58.2 98 34.7
MELO3C032631.2 Cucumis melo HOM05D007110 ORTHO05D000592 7.0e-07 57.8 88 35.2
MELO3C034440.2 Cucumis melo HOM05D007110 ORTHO05D000592 7.0e-07 57.8 87 37.9
CsaV3_1G045370 Cucumis sativus L. HOM05D000539 ORTHO05D000592 7.0e-07 57.8 106 30.2
FAN05G1979 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.0e-07 57.8 99 33.3
FAN14G3091 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.0e-07 57.8 99 33.3
FAN14G5943 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.0e-07 57.8 99 33.3
Prupe.3G119600 Prunus persica HOM05D000539 ORTHO05D000592 7.0e-07 57.8 98 34.7
Prupe.4G253500 Prunus persica HOM05D000539 ORTHO05D000592 7.0e-07 57.8 98 34.7
Ca_27399_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 9.1e-07 57.4 57 38.6
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 9.1e-07 57.4 105 32.4
MELO3C034500.2 Cucumis melo HOM05D007110 ORTHO05D000592 9.1e-07 57.4 97 33.0
RcHm_v2.0_Chr4g0407981 Rosa chinensis HOM05D000539 ORTHO05D000592 9.1e-07 57.4 95 30.5
Sed0004440 Sechium edule HOM05D000539 ORTHO05D000592 9.1e-07 57.4 63 33.3
Sed0019579 Sechium edule HOM05D000539 ORTHO05D000592 9.1e-07 57.4 63 33.3
MELO3C030161.2 Cucumis melo HOM05D000539 ORTHO05D000592 1.2e-06 57.0 65 40.0
FAN09G4698 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-06 57.0 99 33.3
FAN10G3810 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-06 57.0 75 36.0
FAN15G0858 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-06 57.0 79 39.2
FAN28G2905 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.2e-06 57.0 79 39.2
Prupe.1G185000 Prunus persica HOM05D000539 ORTHO05D000592 1.2e-06 57.0 98 33.7
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 1.2e-06 57.0 71 33.8
RcHm_v2.0_Chr6g0261571 Rosa chinensis HOM05D000539 ORTHO05D000592 1.2e-06 57.0 92 29.3
RcHm_v2.0_Chr7g0214041 Rosa chinensis HOM05D000539 ORTHO05D000592 1.2e-06 57.0 77 37.7
CANSAT21G0837 Cannabis sativa HOM05D000539 ORTHO05D000592 1.5e-06 56.6 74 33.8
MELO3C029607.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.5e-06 56.6 104 30.8
FAN23G1524 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.5e-06 56.6 79 39.2
FAN28G2186 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.5e-06 56.6 99 32.3
FAN28G2269 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.5e-06 56.6 79 39.2
MD01G1047900 Malus domestica HOM05D000539 ORTHO05D000592 1.5e-06 56.6 70 37.1
Prupe.1G184100 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-06 56.6 98 34.7
Prupe.1G199400 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-06 56.6 98 34.7
Prupe.1G310400 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-06 56.6 98 33.7
Prupe.7G057400 Prunus persica HOM05D000539 ORTHO05D000592 1.5e-06 56.6 98 33.7
Sed0000174 Sechium edule HOM05D000539 ORTHO05D000592 1.5e-06 56.6 63 33.3
CANSAT80G2084 Cannabis sativa HOM05D000539 ORTHO05D000592 2.0e-06 56.2 74 33.8
FAN06G2612 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.0e-06 56.2 100 33.0
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 2.0e-06 56.2 73 30.1
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.0e-06 56.2 76 32.9
CANSAT64G3006 Cannabis sativa HOM05D011076 ORTHO05D013821 2.6e-06 55.8 83 36.1
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.6e-06 55.8 84 33.3
RcHm_v2.0_Chr4g0414241 Rosa chinensis HOM05D000539 ORTHO05D000592 2.6e-06 55.8 108 27.8
SalBow6G4879 Salvia bowleyana HOM05D000539 ORTHO05D000592 2.6e-06 55.8 70 32.9
CSS0026465 Camellia sinensis var. sinensis HOM05D000539 ORTHO05D000233 3.4e-06 55.5 66 36.4
Ca_20183_v3 Cicer arietinum L. HOM05D002644 ORTHO05D003267 3.4e-06 55.5 59 37.3
MELO3C030851.2 Cucumis melo HOM05D000539 ORTHO05D000592 3.4e-06 55.5 71 35.2
ECA232G3917 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.4e-06 55.5 108 25.9
PSO170G4584 Papaver somniferum HOM05D000539 ORTHO05D000233 3.4e-06 55.5 59 39.0
PSO455G0142 Papaver somniferum HOM05D000539 ORTHO05D000233 3.4e-06 55.5 59 39.0
Prupe.3G118800 Prunus persica HOM05D000539 ORTHO05D000592 3.4e-06 55.5 98 34.7
Prupe.7G055100 Prunus persica HOM05D000539 ORTHO05D000233 3.4e-06 55.5 103 31.1
SHI00755 Sapria himalayana HOM05D000616 ORTHO05D000233 3.4e-06 55.5 71 40.8
Atru.chr6.155 Acer truncatum HOM05D000539 ORTHO05D000592 4.5e-06 55.1 90 33.3
CANSAT25G1419 Cannabis sativa HOM05D011076 ORTHO05D011884 4.5e-06 55.1 80 28.8
AUR62036738 Chenopodium quinoa HOM05D007123 ORTHO05D010541 4.5e-06 55.1 80 37.5
PSO675G7387 Papaver somniferum HOM05D000539 ORTHO05D000233 4.5e-06 55.1 63 36.5
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 4.5e-06 55.1 97 26.8
EL10Ac2g03080 Beta vulgaris HOM05D007123 ORTHO05D010541 5.9e-06 54.7 79 38.0
CANSAT11G0678 Cannabis sativa HOM05D011076 ORTHO05D011884 5.9e-06 54.7 80 28.8
MELO3C034911.2 Cucumis melo HOM05D007110 ORTHO05D000592 5.9e-06 54.7 75 36.0
FvH4_2g18191 Fragaria vesca HOM05D000539 ORTHO05D000233 5.9e-06 54.7 114 26.3
FAN18G0712 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.9e-06 54.7 70 34.3
Lsat_1_v5_gn_5_85761 Lactuca sativa HOM05D011081 ORTHO05D000592 5.9e-06 54.7 92 31.5
Prupe.5G040600 Prunus persica HOM05D000539 ORTHO05D000592 5.9e-06 54.7 105 26.7
FAN10G3314 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.7e-06 54.3 79 38.0
FAN16G3414 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.7e-06 54.3 70 32.9
FAN18G4025 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.7e-06 54.3 78 28.2
SHI14115 Sapria himalayana HOM05D000616 ORTHO05D000233 7.7e-06 54.3 62 38.7
SHI27548 Sapria himalayana HOM05D000616 ORTHO05D000233 7.7e-06 54.3 68 38.2
Sed0025384 Sechium edule HOM05D007110 ORTHO05D000592 7.7e-06 54.3 74 35.1


User provided reference genes

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