Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0024385 Lotus japonicus HOM05D007350 ORTHO05D009323 9.9e-83 310.1 156 100.0
TPR.G2262 Trifolium pratense HOM05D007350 ORTHO05D009323 9.9e-59 230.3 156 76.9
Glyma.13G070400 Glycine max HOM05D007350 ORTHO05D009323 1.6e-56 223.0 157 72.6
Glyma.19G012500 Glycine max HOM05D007350 ORTHO05D009323 1.8e-55 219.5 157 72.0
Medtr6g007793 Medicago truncatula HOM05D007350 ORTHO05D009323 9.6e-54 213.8 155 71.0
Phvul.004G019500 Phaseolus vulgaris HOM05D007350 ORTHO05D009323 1.8e-52 209.5 156 68.6
Lalb_Chr02g0159761 Lupinus albus HOM05D007350 ORTHO05D009323 6.9e-52 207.6 155 70.3
Psat1g060320 Pisum sativum HOM05D007350 ORTHO05D009323 2.9e-50 202.2 156 68.6
VMungo0464G1538 Vigna mungo HOM05D007350 ORTHO05D009323 2.1e-48 196.1 144 70.8
arahy.Tifrunner.gnm1.ann1.7M0RFB Arachis hypogaea HOM05D007350 ORTHO05D009323 7.4e-46 187.6 159 67.9
Ca_04216_v3 Cicer arietinum L. HOM05D007350 ORTHO05D009323 9.0e-36 154.1 112 72.3
TWI79G1045 Tripterygium wilfordii HOM05D007350 ORTHO05D009323 2.7e-32 142.5 161 49.7
Prupe.8G169100 Prunus persica HOM05D007350 ORTHO05D009323 4.6e-32 141.7 162 50.6
Haze_02104 Corylus avellana HOM05D007350 ORTHO05D009323 2.0e-30 136.3 171 48.5
FvH4_2g15660 Fragaria vesca HOM05D007350 ORTHO05D009323 6.3e-29 131.3 159 49.1
FAN24G2045 Fragaria x ananassa HOM05D007350 ORTHO05D009323 1.8e-28 129.8 159 49.1
Actinidia18040 Actinidia chinensis HOM05D007350 ORTHO05D009323 3.1e-28 129.0 125 58.4
COL.COLO4_17379 Corchorus olitorius HOM05D007350 ORTHO05D009323 5.3e-28 128.3 163 49.7
Ciclev10029452m.g Citrus clementina HOM05D007350 ORTHO05D009323 9.1e-28 127.5 105 62.9
FAN15G0854 Fragaria x ananassa HOM05D007350 ORTHO05D009323 9.1e-28 127.5 159 47.8
Manes.04G071000 Manihot esculenta HOM05D007350 ORTHO05D009323 9.1e-28 127.5 98 68.4
RcHm_v2.0_Chr6g0278921 Rosa chinensis HOM05D007350 ORTHO05D009323 9.1e-28 127.5 161 47.2
Gohir.D02G227300 Gossypium hirsutum HOM05D007350 ORTHO05D009323 1.5e-27 126.7 160 49.4
Gohir.A03G205900 Gossypium hirsutum HOM05D007350 ORTHO05D009323 2.0e-27 126.3 161 48.4
Gorai.005G255200 Gossypium raimondii HOM05D007350 ORTHO05D009323 3.4e-27 125.6 160 49.4
QL11p052353 Quercus lobata HOM05D007350 ORTHO05D009323 3.4e-27 125.6 165 47.3
Sabra04G0119700 Salix brachista HOM05D007350 ORTHO05D009323 3.4e-27 125.6 101 67.3
Potri.004G177800 Populus trichocarpa HOM05D007350 ORTHO05D009323 1.0e-26 124.0 118 59.3
RcHm_v2.0_Chr6g0278901 Rosa chinensis HOM05D007350 ORTHO05D009323 1.3e-26 123.6 159 47.2
Thecc.02G055300 Theobroma cacao HOM05D007350 ORTHO05D009323 1.7e-26 123.2 98 63.3
FAN27G1653 Fragaria x ananassa HOM05D007350 ORTHO05D009323 2.9e-26 122.5 172 46.5
GSVIVG01023973001 Vitis vinifera HOM05D007350 ORTHO05D009323 2.9e-26 122.5 111 58.6
Actinidia20526 Actinidia chinensis HOM05D007350 ORTHO05D009323 3.8e-26 122.1 137 52.6
Rhsim03G0180300 Rhododendron simsii HOM05D007350 ORTHO05D009323 5.0e-26 121.7 120 59.2
ClCG02G003950 Citrullus lanatus HOM05D007350 ORTHO05D009323 6.5e-26 121.3 150 50.0
Nn4g24553 Nelumbo nucifera HOM05D007350 ORTHO05D009323 6.5e-26 121.3 106 60.4
CiPaw.05G085400 Carya illinoinensis HOM05D007350 ORTHO05D009323 8.5e-26 120.9 147 46.3
Duzib052G1005 Durio zibethinus HOM05D007350 ORTHO05D009323 1.4e-25 120.2 99 63.6
Eucgr.G01372 Eucalyptus grandis HOM05D007350 ORTHO05D009323 3.2e-25 119.0 113 61.1
MD10G1127900 Malus domestica HOM05D007350 ORTHO05D009323 7.2e-25 117.9 112 58.9
MELO3C013337.2 Cucumis melo HOM05D007350 ORTHO05D009323 1.6e-24 116.7 81 71.6
CsaV3_7G001160 Cucumis sativus L. HOM05D007350 ORTHO05D009323 1.6e-24 116.7 81 71.6
Hma1.2p1_0032F.1_g019200 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 2.7e-24 115.9 94 67.0
MBI19_g01918_MAGBIO Magnolia biondii HOM05D007350 ORTHO05D009323 3.6e-24 115.5 131 49.6
Sc08g0002720 Simmondsia chinensis HOM05D007350 ORTHO05D009323 4.7e-24 115.2 155 45.8
CANSAT78G0569 Cannabis sativa HOM05D007350 ORTHO05D009323 7.9e-24 114.4 159 46.5
THA.LOC104807801 Tarenaya hassleriana HOM05D007350 ORTHO05D009323 1.0e-23 114.0 150 45.3
Cpa.g.sc20.115 Carica papaya HOM05D007350 ORTHO05D009323 1.4e-23 113.6 164 43.3
PGR042G2321 Punica granatum HOM05D007350 ORTHO05D009323 3.0e-23 112.5 119 56.3
Migut.B01238 Erythranthe guttata HOM05D007350 ORTHO05D009323 5.1e-23 111.7 171 45.0
PSO782G4816 Papaver somniferum HOM05D007350 ORTHO05D009323 8.8e-23 110.9 159 43.4
ATR0598G093 Amborella trichopoda HOM05D007350 ORTHO05D009323 1.1e-22 110.5 115 55.7
Cc09_g10330 Coffea canephora HOM05D007350 ORTHO05D009323 1.1e-22 110.5 80 67.5
Thhalv10026464m.g Eutrema salsugineum HOM05D007350 ORTHO05D009323 2.0e-22 109.8 83 65.1
PSO063G0872 Papaver somniferum HOM05D007350 ORTHO05D009323 3.3e-22 109.0 81 66.7
Aqoxy3G04007 Aquilegia oxysepala HOM05D007350 ORTHO05D009323 9.7e-22 107.5 103 58.3
Sed0025246 Sechium edule HOM05D007350 ORTHO05D009323 1.3e-21 107.1 94 58.5
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 2.2e-21 106.3 82 62.2
TAR374G1157 Trochodendron aralioides HOM05D007350 ORTHO05D009323 3.7e-21 105.5 91 60.4
SGA_v2.0_scaffold124G33608 Striga asiatica HOM05D007350 ORTHO05D009323 1.1e-20 104.0 97 60.8
Sp7g37290 Schrenkiella parvula HOM05D007350 ORTHO05D009323 3.1e-20 102.4 80 61.2
CARHR294210 Cardamine hirsuta HOM05D007350 ORTHO05D009323 5.3e-20 101.7 85 61.2
Oeu025102.1 Olea europaea HOM05D007350 ORTHO05D009323 5.3e-20 101.7 74 68.9
MSTRG.20506 Avicennia marina HOM05D007350 ORTHO05D009323 9.1e-20 100.9 133 50.4
Dinv09314 Davidia involucrata HOM05D007350 ORTHO05D009323 1.2e-19 100.5 125 41.6
AL7G10350 Arabidopsis lyrata HOM05D007350 ORTHO05D009323 3.5e-19 99.0 85 58.8
CAN.G112.14 Capsicum annuum HOM05D007350 ORTHO05D009323 3.5e-19 99.0 77 62.3
AUR62013001 Chenopodium quinoa HOM05D007350 ORTHO05D009323 3.5e-19 99.0 117 51.3
AT4G38490 Arabidopsis thaliana HOM05D007350 ORTHO05D009323 4.5e-19 98.6 79 60.8
Carub.0007s0037 Capsella rubella HOM05D007350 ORTHO05D009323 4.5e-19 98.6 77 62.3
Lsat_1_v5_gn_4_72021 Lactuca sativa HOM05D007350 ORTHO05D009323 7.7e-19 97.8 96 59.4
Hund16245 Selenicereus undatus HOM05D007350 ORTHO05D009323 7.7e-19 97.8 121 51.2
BolC3t19964H Brassica oleracea HOM05D007350 ORTHO05D009323 1.0e-18 97.4 80 62.5
BcaC01g00233 Brassica carinata HOM05D007350 ORTHO05D009323 1.3e-18 97.1 77 62.3
A08p24200 Brassica napus HOM05D007350 ORTHO05D009323 1.7e-18 96.7 82 61.0
CDE05G3477 Ceratophyllum demersum HOM05D007350 ORTHO05D009323 2.2e-18 96.3 81 64.2
C03p77120 Brassica napus HOM05D007350 ORTHO05D009323 2.9e-18 95.9 80 61.2
Nitab4.5_0005221g0020 Nicotiana tabacum HOM05D007350 ORTHO05D009323 3.8e-18 95.5 145 42.8
Atru.chr5.3441 Acer truncatum HOM05D007350 ORTHO05D009323 6.5e-18 94.7 81 60.5
BraA08t34374Z Brassica rapa HOM05D007350 ORTHO05D009323 1.1e-17 94.0 80 62.5
Os09g0450200 Oryza sativa ssp. japonica HOM05D007350 ORTHO05D009323 1.1e-17 94.0 143 42.0
Hma1.2p1_0032F.1_g019210 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 1.4e-17 93.6 66 75.8
AUR62010011 Chenopodium quinoa HOM05D007350 ORTHO05D009323 2.5e-17 92.8 80 61.2
CSS0005535 Camellia sinensis var. sinensis HOM05D007350 ORTHO05D009323 3.2e-17 92.4 109 45.9
CDE11G0403 Ceratophyllum demersum HOM05D007350 ORTHO05D009323 3.2e-17 92.4 77 66.2
BcaC01g00225 Brassica carinata HOM05D007350 ORTHO05D009323 5.5e-17 91.7 80 60.0
ECA234G1892 Erigeron canadensis HOM05D007350 ORTHO05D009323 5.5e-17 91.7 151 42.4
unitig_749.g14334 Utricularia gibba HOM05D000730 ORTHO05D000578 7.2e-17 91.3 84 60.7
Solyc05g050720.4 Solanum lycopersicum HOM05D007350 ORTHO05D009323 2.1e-16 89.7 98 52.0
Sopen05g029130 Solanum pennellii HOM05D007350 ORTHO05D009323 2.1e-16 89.7 98 52.0
HanXRQChr10g0298081 Helianthus annuus HOM05D007350 ORTHO05D009323 2.7e-16 89.4 98 51.0
Nitab4.5_0002598g0070 Nicotiana tabacum HOM05D007350 ORTHO05D009323 3.6e-16 89.0 74 62.2
Atru.chr6.83 Acer truncatum HOM05D007350 ORTHO05D009323 3.3e-14 82.4 121 44.6
MD10G1128000 Malus domestica HOM05D007350 ORTHO05D009323 3.3e-14 82.4 70 68.6
RcHm_v2.0_Chr6g0278961 Rosa chinensis HOM05D007350 ORTHO05D009323 5.3e-12 75.1 119 35.3
Pp3c6_16710 Physcomitrium patens HOM05D007350 ORTHO05D009323 1.2e-08 63.9 79 44.3
HPP92_012658 Vanilla planifolia HOM05D007350 ORTHO05D009323 3.6e-08 62.4 45 62.2
SalBow5G3345 Salvia bowleyana HOM05D007350 ORTHO05D009323 8.0e-08 61.2 62 46.8
Mapoly0060s0112 Marchantia polymorpha HOM05D007350 ORTHO05D009323 1.8e-07 60.1 77 41.6
SEGI_00987 Sequoiadendron giganteum HOM05D007350 ORTHO05D009323 8.8e-07 57.8 83 42.2
PGSC0003DMG400006999 Solanum tuberosum HOM05D007350 ORTHO05D009323 1.2e-06 57.4 62 46.8


User provided reference genes

Program Settings