Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 1.6e-255 885.6 427 100.0
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 6.9e-187 657.5 418 77.0
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 1.5e-186 656.4 438 74.2
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 4.9e-185 651.4 425 74.4
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 5.5e-184 647.9 419 75.4
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 7.1e-184 647.5 418 74.6
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 1.6e-183 646.4 430 74.7
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 3.5e-183 645.2 433 74.6
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 3.3e-181 638.6 429 73.4
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 3.3e-181 638.6 422 73.0
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 1.4e-179 633.3 428 72.4
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 3.1e-179 632.1 430 72.1
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 4.0e-179 631.7 431 71.5
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 5.3e-179 631.3 427 73.3
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 2.0e-178 629.4 428 70.8
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 2.0e-178 629.4 421 71.3
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 2.6e-178 629.0 422 72.7
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 3.4e-178 628.6 429 71.8
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 7.6e-178 627.5 420 74.5
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 2.2e-177 625.9 422 73.5
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 2.2e-177 625.9 422 73.5
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 6.5e-177 624.4 423 72.1
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 1.1e-176 623.6 419 72.8
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.4e-176 623.2 432 70.8
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 5.5e-176 621.3 424 72.6
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 7.1e-176 620.9 429 70.2
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 1.6e-175 619.8 449 67.9
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 7.9e-175 617.5 427 71.4
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 6.7e-174 614.4 422 68.5
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.1e-173 613.6 418 70.3
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 1.1e-173 613.6 429 69.2
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.5e-173 613.2 426 70.0
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 5.7e-173 611.3 425 71.3
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.3e-172 610.1 427 70.7
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 1.3e-172 610.1 422 71.8
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.2e-172 609.4 430 69.5
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.8e-172 609.0 430 69.5
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 4.8e-172 608.2 428 69.4
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 6.3e-172 607.8 429 69.7
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 8.2e-172 607.4 427 68.1
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 1.1e-171 607.1 421 69.4
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.1e-171 607.1 415 69.9
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.4e-171 606.7 428 69.4
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 1.4e-171 606.7 444 66.9
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 2.4e-171 605.9 429 68.3
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 4.1e-171 605.1 417 69.8
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.5e-170 603.2 424 71.0
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 1.5e-170 603.2 427 68.1
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 1.0e-169 600.5 430 70.2
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.3e-169 600.1 426 71.1
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 2.2e-169 599.4 426 67.1
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 1.9e-168 596.3 426 67.4
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.5e-168 595.9 420 69.0
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 3.2e-168 595.5 416 68.8
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 4.2e-168 595.1 427 68.9
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 4.2e-168 595.1 427 68.4
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 9.4e-168 594.0 427 68.6
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 9.4e-168 594.0 427 68.4
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 1.2e-167 593.6 427 68.9
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.6e-167 593.2 421 68.4
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 2.7e-167 592.4 428 66.1
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 6.1e-167 591.3 428 68.2
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 7.9e-167 590.9 424 67.7
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.0e-166 590.5 418 69.1
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.8e-166 589.7 431 66.1
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 3.0e-166 589.0 417 68.6
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 5.1e-166 588.2 423 68.3
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.1e-166 588.2 418 68.4
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 6.7e-166 587.8 428 68.5
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 1.1e-165 587.0 423 68.8
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 1.5e-165 586.6 427 68.1
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 4.3e-165 585.1 427 68.1
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 5.7e-165 584.7 427 68.4
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 9.7e-165 583.9 426 65.7
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 9.7e-165 583.9 427 66.7
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 2.2e-164 582.8 426 66.4
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 3.7e-164 582.0 428 66.8
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 1.1e-163 580.5 418 68.4
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.1e-163 580.5 412 68.0
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.4e-163 580.1 423 68.1
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 1.8e-163 579.7 428 67.5
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 6.9e-163 577.8 426 65.5
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-162 576.2 418 68.7
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 2.0e-162 576.2 418 68.7
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 2.0e-162 576.2 418 68.2
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 2.6e-162 575.9 418 67.9
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.0e-161 573.9 430 66.7
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 2.2e-161 572.8 423 65.7
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.2e-160 568.9 426 66.4
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 7.2e-160 567.8 420 66.0
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 9.4e-160 567.4 428 63.6
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 3.6e-159 565.5 421 65.8
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.0e-158 563.9 425 65.4
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 1.8e-158 563.1 422 65.2
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 2.8e-156 555.8 436 63.5
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.1e-155 552.4 430 62.1
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 4.1e-155 552.0 430 62.1
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 7.0e-155 551.2 419 65.2
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.2e-154 550.4 424 63.0
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 2.9e-153 545.8 418 64.4
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.2e-152 542.0 430 63.7
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.0e-150 537.3 421 63.9
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 8.8e-150 534.3 403 66.5
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 5.7e-149 531.6 411 64.2
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 6.3e-148 528.1 427 62.8
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 1.1e-147 527.3 421 62.0
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.1e-147 525.4 430 61.9
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.2e-146 523.9 448 57.4
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.0e-146 523.1 418 64.4
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 5.9e-146 521.5 427 62.5
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.5e-144 516.2 420 59.0
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.0e-141 506.5 422 61.4
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 1.8e-139 500.0 439 56.7
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 1.8e-139 500.0 360 69.7
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 6.5e-137 491.5 422 55.5
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 9.4e-136 487.6 427 54.3
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.0e-134 484.2 418 57.7
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 9.5e-128 461.1 315 73.7
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.0e-126 456.1 402 55.2
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 1.2e-125 454.1 407 57.0
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 4.3e-120 435.6 436 50.9
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 6.0e-114 415.2 415 52.3
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 4.0e-110 402.5 415 48.2
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.1e-107 392.5 349 54.2
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 2.7e-106 389.8 302 62.9
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 3.9e-105 386.0 420 46.2
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 5.4e-99 365.5 425 48.5
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 4.6e-98 362.5 229 77.3
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.6e-95 354.0 263 64.3
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 7.6e-93 345.1 426 46.9
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 7.3e-88 328.6 429 41.3
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 2.1e-87 327.0 239 66.5
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.3e-86 322.4 294 53.4
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 6.2e-79 298.9 256 61.7
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 3.0e-57 226.9 142 75.4
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.3e-48 196.8 147 61.9
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.3e-48 196.4 313 38.7
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.6e-45 187.2 133 63.9
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 5.9e-45 186.0 163 59.5
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 9.4e-43 178.7 139 63.3
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 1.2e-42 178.3 116 70.7
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.8e-41 174.5 208 47.6
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 6.7e-41 172.6 158 60.8
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 2.8e-39 167.2 140 62.1
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-31 141.7 161 52.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.3e-31 141.7 410 27.3
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 7.0e-22 109.4 79 65.8
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-21 107.8 78 66.7
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 3.2e-19 100.5 71 66.2
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-18 97.8 71 66.2
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.0e-17 95.5 91 51.6
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-17 95.1 95 56.8
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.0e-17 93.6 92 51.1
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 1.5e-16 91.7 103 51.5
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 7.0e-14 82.8 60 68.3
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.7e-12 78.2 64 60.9
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 8.6e-12 75.9 164 29.3
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-11 74.3 62 62.9
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 5.5e-11 73.2 57 64.9
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 1.2e-08 65.5 58 62.1
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-08 64.7 55 60.0
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 2.9e-07 60.8 77 35.1
SEGI_15796 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.9e-07 60.1 76 42.1
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 6.3e-07 59.7 50 54.0
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 6.3e-07 59.7 131 33.6


User provided reference genes

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