Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 5.0e-123 444.5 234 100.0
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 7.8e-108 394.0 234 86.8
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 3.9e-107 391.7 234 86.8
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 3.3e-106 388.7 234 86.3
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 8.1e-105 384.0 234 85.5
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 1.1e-104 383.6 234 85.5
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 6.8e-104 380.9 234 85.9
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 6.4e-102 374.4 235 83.0
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.7e-99 366.3 234 82.1
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 6.6e-99 364.4 234 81.2
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 4.4e-95 351.7 234 77.8
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 2.2e-94 349.4 234 77.4
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 2.4e-93 345.9 233 76.8
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.0e-91 340.5 233 74.2
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 1.9e-90 336.3 234 75.6
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 1.2e-89 333.6 234 75.6
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 1.6e-89 333.2 234 77.8
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 4.0e-88 328.6 222 77.0
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 4.0e-88 328.6 256 69.1
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 5.2e-88 328.2 235 71.9
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.0e-87 326.2 235 71.9
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 3.4e-87 325.5 234 70.9
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 4.4e-87 325.1 217 75.6
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.2e-86 322.8 235 70.6
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.9e-86 322.4 236 71.2
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.8e-86 322.0 236 71.2
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 6.4e-86 321.2 222 74.3
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 6.4e-86 321.2 235 71.1
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 8.4e-86 320.9 235 72.3
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 1.1e-85 320.5 222 73.9
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.4e-85 320.1 235 71.1
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.4e-85 319.3 234 71.8
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.2e-85 318.9 236 70.3
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 3.2e-85 318.9 214 73.4
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 5.4e-85 318.2 235 71.1
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.4e-85 318.2 236 70.8
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 7.1e-85 317.8 226 72.6
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 9.3e-85 317.4 232 70.7
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 9.3e-85 317.4 234 71.4
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.6e-84 316.6 236 70.3
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 1.6e-84 316.6 235 70.2
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 2.1e-84 316.2 257 66.1
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.6e-84 315.1 226 73.0
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 6.0e-84 314.7 207 75.8
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 1.0e-83 313.9 234 69.2
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.3e-83 313.5 219 74.9
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 1.7e-83 313.2 234 68.8
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 2.3e-83 312.8 235 68.9
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 2.3e-83 312.8 228 74.1
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.0e-83 312.4 235 68.5
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 3.0e-83 312.4 228 73.7
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 3.0e-83 312.4 228 73.7
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.0e-83 312.4 232 69.4
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 3.9e-83 312.0 235 68.1
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 3.9e-83 312.0 235 69.8
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 3.9e-83 312.0 219 73.1
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 3.9e-83 312.0 234 67.9
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 5.1e-83 311.6 235 68.9
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.1e-83 311.6 218 75.2
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 5.1e-83 311.6 217 72.8
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 8.7e-83 310.8 224 70.1
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 8.7e-83 310.8 221 73.8
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 1.9e-82 309.7 222 73.0
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 1.9e-82 309.7 221 72.4
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 3.3e-82 308.9 224 70.5
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 5.6e-82 308.1 235 67.7
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 9.6e-82 307.4 210 72.4
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.6e-81 306.6 219 70.8
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 2.1e-81 306.2 216 73.1
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 3.6e-81 305.4 218 71.1
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 3.6e-81 305.4 237 68.4
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 3.6e-81 305.4 223 70.0
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 6.2e-81 304.7 253 63.2
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 8.1e-81 304.3 219 71.7
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.1e-80 303.9 218 70.6
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 1.4e-80 303.5 236 67.4
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.8e-80 303.1 221 70.1
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 3.1e-80 302.4 170 90.6
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 4.0e-80 302.0 234 67.5
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 4.0e-80 302.0 209 72.2
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 4.0e-80 302.0 214 72.4
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 4.0e-80 302.0 231 68.4
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 4.0e-80 302.0 230 68.3
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 6.9e-80 301.2 292 58.2
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 6.9e-80 301.2 235 65.1
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 1.2e-79 300.4 230 68.3
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.5e-79 300.1 208 72.6
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.6e-79 299.3 208 71.2
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 3.4e-79 298.9 233 67.0
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 4.5e-79 298.5 230 67.8
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 4.5e-79 298.5 236 65.7
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 4.5e-79 298.5 228 69.7
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 7.6e-79 297.7 235 65.1
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 9.9e-79 297.4 204 76.5
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 1.3e-78 297.0 234 67.1
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 1.7e-78 296.6 233 67.8
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.2e-78 296.2 264 62.9
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 2.9e-78 295.8 220 70.9
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.9e-78 295.8 235 65.1
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.8e-78 295.4 234 66.7
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 6.4e-78 294.7 234 67.9
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 8.4e-78 294.3 230 67.8
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 8.4e-78 294.3 222 68.5
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 8.4e-78 294.3 230 67.8
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.4e-78 294.3 229 69.9
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 1.9e-77 293.1 225 68.0
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 1.9e-77 293.1 231 67.1
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 4.2e-77 292.0 235 65.1
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 9.3e-77 290.8 214 69.6
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.2e-76 290.4 224 67.4
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 3.9e-75 285.4 233 65.7
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.1e-75 285.0 234 64.1
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 8.7e-75 284.3 241 62.7
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.5e-74 283.5 221 67.0
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 7.4e-74 281.2 215 65.6
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.8e-72 276.6 210 64.8
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 3.1e-72 275.8 235 63.4
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.6e-71 272.7 215 67.9
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 3.4e-71 272.3 318 51.3
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 4.2e-69 265.4 198 65.2
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 5.5e-69 265.0 169 81.7
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 3.3e-66 255.8 233 57.9
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.3e-65 253.8 163 78.5
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 7.6e-63 244.6 227 60.8
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 2.9e-62 242.7 234 59.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 7.1e-61 238.0 215 55.3
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 3.5e-60 235.7 216 58.3
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 6.0e-60 235.0 129 89.9
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 5.7e-58 228.4 222 55.0
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 3.1e-56 222.6 175 56.6
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 4.1e-56 222.2 171 66.7
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 2.6e-55 219.5 210 56.7
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.6e-55 219.5 203 60.6
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 5.9e-55 218.4 184 57.6
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 1.0e-54 217.6 129 82.9
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 2.2e-54 216.5 167 68.9
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.1e-53 214.2 169 68.6
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 1.0e-51 207.6 175 62.3
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 1.3e-51 207.2 261 46.7
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 1.1e-50 204.1 145 72.4
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 4.8e-49 198.7 117 82.1
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 1.8e-48 196.8 218 51.4
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 4.5e-47 192.2 120 76.7
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 4.2e-45 185.7 225 48.9
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 4.6e-44 182.2 104 81.7
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 1.0e-43 181.0 300 40.0
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 1.2e-39 167.5 157 59.9
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 4.2e-37 159.1 106 81.1
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 2.7e-36 156.4 188 45.2
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.0e-35 154.5 190 50.5
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 1.4e-35 154.1 106 78.3
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 2.0e-34 150.2 178 52.2
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.1e-29 134.4 123 62.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 7.2e-29 131.7 81 77.8
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 5.7e-26 122.1 181 44.8
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 7.0e-24 115.2 75 73.3
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.6e-23 114.0 140 51.4
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 6.5e-22 108.6 63 74.6
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.1e-21 107.8 79 65.8
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 9.4e-21 104.8 167 41.3
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 3.6e-20 102.8 176 39.8
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 4.7e-20 102.4 78 67.9
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 6.1e-20 102.1 67 77.6
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 3.0e-19 99.8 59 79.7
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 6.8e-19 98.6 91 62.6
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 8.8e-19 98.2 137 44.5
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 1.2e-18 97.8 110 50.9
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 2.0e-18 97.1 81 61.7
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 3.1e-16 89.7 237 32.9
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 1.5e-13 80.9 43 90.7
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.2e-12 77.8 95 47.4
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 6.8e-11 72.0 41 85.4
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 8.8e-11 71.6 121 41.3
Lalb_Chr22g0354081 Lupinus albus HOM05D000001 ORTHO05D048480 9.8e-10 68.2 60 61.7
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 5.4e-08 62.4 52 59.6
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 3.5e-07 59.7 38 76.3
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 5.9e-07 58.9 44 72.7
TPR.G8100 Trifolium pratense HOM05D000001 ORTHO05D048480 5.9e-07 58.9 44 77.3
arahy.Tifrunner.gnm1.ann1.20C9TU Arachis hypogaea HOM05D000211 ORTHO05D002993 1.0e-06 58.2 30 86.7
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.3e-06 57.0 34 67.6


User provided reference genes

Program Settings