Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 6.1e-230 800.8 521 100.0
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 4.4e-151 538.9 531 62.9
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 5.9e-148 528.5 568 63.9
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.5e-146 523.9 554 68.6
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 1.9e-146 523.5 539 63.1
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 6.7e-144 515.0 534 62.0
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 6.3e-142 508.4 536 67.0
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.6e-140 503.8 534 67.2
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 4.5e-140 502.3 534 63.3
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 5.5e-138 495.4 531 66.9
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 5.5e-138 495.4 531 66.9
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 4.4e-127 459.1 550 54.2
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 1.6e-121 440.7 557 49.9
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 6.8e-120 435.3 560 52.7
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 5.9e-116 422.2 564 47.7
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 8.0e-113 411.8 567 47.6
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.0e-112 409.5 534 49.8
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 3.4e-111 406.4 544 48.5
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.4e-111 406.4 544 48.5
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.4e-111 406.0 534 49.4
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 5.8e-111 405.6 544 48.3
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 7.5e-111 405.2 543 51.2
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 9.8e-111 404.8 541 50.6
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 9.8e-111 404.8 541 50.6
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.7e-110 402.9 535 48.0
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 4.9e-110 402.5 541 48.4
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 1.1e-109 401.4 559 48.3
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 2.0e-108 397.1 537 51.8
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 2.0e-108 397.1 391 59.6
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 2.0e-108 397.1 539 49.7
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.7e-108 396.7 561 46.0
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 7.8e-108 395.2 389 59.4
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.7e-107 394.0 388 58.5
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 6.6e-107 392.1 434 64.5
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.5e-106 391.0 388 58.5
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.9e-106 390.6 549 49.7
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 4.3e-106 389.4 543 49.7
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 1.6e-105 387.5 556 46.8
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.6e-105 386.3 576 44.3
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 4.7e-105 386.0 559 47.0
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 8.0e-105 385.2 544 48.9
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 2.3e-104 383.6 548 46.0
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 4.0e-104 382.9 385 58.2
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 6.8e-104 382.1 533 47.7
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 2.6e-103 380.2 544 46.5
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 3.4e-103 379.8 392 58.7
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 2.2e-102 377.1 392 56.4
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 2.9e-102 376.7 552 46.2
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 2.9e-102 376.7 579 47.0
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 2.9e-102 376.7 554 45.8
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 8.3e-102 375.2 352 60.5
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 8.3e-102 375.2 581 44.2
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.9e-101 374.0 384 57.8
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.9e-101 374.0 389 57.8
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 2.4e-101 373.6 395 56.2
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 3.2e-101 373.2 550 45.1
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 7.1e-101 372.1 386 57.5
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.2e-100 371.3 389 57.6
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.6e-100 370.9 564 49.1
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 2.7e-100 370.2 593 44.2
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 4.6e-100 369.4 580 46.4
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 1.0e-99 368.2 527 50.1
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.0e-99 368.2 390 56.2
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 3.0e-99 366.7 388 55.9
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.9e-99 366.3 516 48.6
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 3.9e-99 366.3 577 45.8
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 8.6e-99 365.2 390 55.1
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.9e-98 364.0 399 56.4
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 2.5e-98 363.6 537 48.4
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 4.3e-98 362.8 386 54.7
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 5.6e-98 362.5 531 48.4
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 5.6e-98 362.5 553 53.5
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 1.2e-97 361.3 386 54.4
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 1.2e-97 361.3 552 47.1
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 2.1e-97 360.5 402 53.5
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 3.6e-97 359.8 575 44.3
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 4.7e-97 359.4 394 54.1
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 1.4e-96 357.8 387 54.5
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 3.1e-96 356.7 387 54.3
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 3.1e-96 356.7 387 54.3
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 4.0e-96 356.3 590 42.5
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 4.0e-96 356.3 525 46.9
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 1.5e-95 354.4 394 53.8
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 2.0e-95 354.0 555 47.6
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 4.4e-95 352.8 395 54.7
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 5.8e-95 352.4 560 42.7
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 5.8e-95 352.4 410 52.2
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 5.8e-95 352.4 539 52.5
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 2.2e-94 350.5 405 52.3
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.9e-94 350.1 550 47.6
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 1.4e-93 347.8 539 46.9
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 5.4e-93 345.9 549 45.0
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 9.2e-93 345.1 561 41.0
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.1e-92 344.0 396 52.3
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 2.7e-92 343.6 528 56.4
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 6.0e-92 342.4 389 58.6
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 6.6e-91 339.0 547 42.8
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 1.5e-90 337.8 606 44.7
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 1.5e-90 337.8 560 42.9
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 3.6e-89 333.2 551 46.3
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 6.2e-89 332.4 537 43.9
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 8.4e-86 322.0 472 47.9
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 4.6e-84 316.2 384 50.5
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 8.7e-83 312.0 373 52.5
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 1.1e-82 311.6 347 53.3
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.9e-82 310.8 384 50.3
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 2.1e-81 307.4 371 50.4
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 9.0e-80 302.0 379 49.9
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 2.4e-77 293.9 388 47.4
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.7e-75 287.7 375 49.3
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.6e-68 264.6 526 40.7
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.4e-56 224.2 141 78.0
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.9e-51 206.8 132 77.3
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 5.3e-48 196.4 345 39.7
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 5.3e-48 196.4 251 43.8
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 2.6e-47 194.1 333 39.3
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 2.9e-46 190.7 214 50.9
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.0e-43 182.2 262 45.4
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 5.7e-42 176.4 361 36.8
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 8.2e-41 172.6 194 49.0
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.0e-39 167.9 108 77.8
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 2.7e-36 157.5 227 41.4
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 1.3e-33 148.7 113 69.9
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 2.9e-30 137.5 198 43.4
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 2.9e-30 137.5 198 43.4
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 5.0e-30 136.7 103 62.1
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 5.0e-30 136.7 103 62.1
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 8.5e-30 136.0 345 42.3
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 5.5e-29 133.3 248 40.3
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 4.0e-27 127.1 198 42.4
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.7e-17 94.0 122 46.7
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.8e-16 91.7 161 40.4
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.1e-16 90.5 62 72.6
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 9.1e-16 89.4 267 32.2
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 3.4e-10 70.9 200 29.5
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 6.3e-09 66.6 177 36.2
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 1.4e-08 65.5 170 31.2
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 3.1e-08 64.3 120 35.8
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 2.0e-07 61.6 119 37.0
vmacro02074 Vaccinium macrocarpon HOM05D004650 ORTHO05D005715 2.3e-06 58.2 206 25.2
Lalb_Chr23g0273421 Lupinus albus HOM05D000142 ORTHO05D001253 2.9e-06 57.8 173 26.0
Aa31LG3G6050 Aethionema arabicum HOM05D000142 ORTHO05D001253 5.0e-06 57.0 215 24.7
Oeu045207.1 Olea europaea HOM05D000142 ORTHO05D001253 5.0e-06 57.0 219 27.4
AagrBONN_evm.TU.Sc2ySwM_369.318 Anthoceros agrestis HOM05D004650 ORTHO05D005715 6.6e-06 56.6 223 30.0
AT5G50250 Arabidopsis thaliana HOM05D000142 ORTHO05D001253 8.6e-06 56.2 173 26.6


User provided reference genes

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