Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 3.0e-96 355.1 175 100.0
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 5.3e-77 291.2 166 84.9
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 6.9e-77 290.8 168 84.5
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 1.2e-76 290.0 170 79.4
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 2.0e-76 289.3 166 83.7
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 7.7e-76 287.3 167 79.6
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 7.2e-74 280.8 162 85.2
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 4.7e-73 278.1 172 78.5
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 3.0e-72 275.4 176 77.3
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 2.6e-71 272.3 175 74.3
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 5.7e-71 271.2 170 74.7
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 5.7e-71 271.2 167 77.2
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 1.7e-70 269.6 167 76.6
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 2.2e-70 269.2 169 75.1
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 1.1e-69 266.9 154 79.2
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 1.4e-69 266.5 171 74.9
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 3.1e-69 265.4 171 74.9
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 7.0e-69 264.2 167 74.9
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 7.0e-69 264.2 159 77.4
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 9.1e-69 263.8 165 75.2
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 1.5e-68 263.1 172 74.4
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 2.0e-68 262.7 174 71.8
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 3.5e-68 261.9 171 73.1
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 3.5e-68 261.9 151 78.8
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 1.0e-67 260.4 169 72.2
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 1.0e-67 260.4 172 72.7
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 1.3e-67 260.0 174 72.4
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 2.9e-67 258.8 168 73.8
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 3.8e-67 258.5 166 70.5
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 3.8e-67 258.5 166 72.9
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 3.8e-67 258.5 174 70.7
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 5.0e-67 258.1 169 72.2
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 5.0e-67 258.1 169 72.2
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 6.5e-67 257.7 156 75.0
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 8.5e-67 257.3 170 71.2
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 1.1e-66 256.9 168 72.0
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 1.1e-66 256.9 169 70.4
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 1.5e-66 256.5 173 71.7
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 1.5e-66 256.5 163 74.8
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 1.9e-66 256.1 170 72.4
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 1.9e-66 256.1 170 72.4
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 9.4e-66 253.8 168 72.0
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 9.4e-66 253.8 158 73.4
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 9.4e-66 253.8 158 73.4
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.6e-65 253.1 172 70.3
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 2.1e-65 252.7 169 69.2
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 2.7e-65 252.3 152 74.3
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 2.7e-65 252.3 174 69.5
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 3.6e-65 251.9 171 70.2
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 3.6e-65 251.9 170 70.0
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 4.7e-65 251.5 172 69.8
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 1.0e-64 250.4 161 69.6
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 1.4e-64 250.0 167 68.3
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 2.3e-64 249.2 166 69.3
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 3.9e-64 248.4 171 67.3
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 3.9e-64 248.4 156 69.9
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 3.9e-64 248.4 155 71.6
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 5.2e-64 248.1 171 67.8
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 8.8e-64 247.3 170 67.6
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.1e-63 246.9 156 69.2
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 2.0e-63 246.1 165 68.5
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 2.6e-63 245.7 216 59.7
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 5.7e-63 244.6 171 67.8
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 9.7e-63 243.8 169 68.0
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 9.7e-63 243.8 169 68.0
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 2.2e-62 242.7 158 70.3
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 3.7e-62 241.9 171 63.7
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 6.3e-62 241.1 169 67.5
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 6.3e-62 241.1 167 68.3
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 8.2e-62 240.7 155 69.0
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.8e-61 239.6 169 66.9
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 2.4e-61 239.2 156 68.6
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 5.3e-61 238.0 172 68.0
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 7.0e-61 237.7 169 67.5
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 1.2e-60 236.9 164 62.8
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 1.6e-60 236.5 150 74.0
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 2.0e-60 236.1 161 64.0
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 4.5e-60 235.0 158 67.1
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 1.3e-59 233.4 149 74.5
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 1.7e-59 233.0 151 72.2
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 3.8e-59 231.9 147 69.4
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 1.9e-58 229.6 158 67.1
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 3.2e-58 228.8 164 64.6
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 5.5e-58 228.0 180 64.4
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.2e-57 226.9 166 63.3
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 2.1e-57 226.1 158 66.5
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 1.2e-55 220.3 121 82.6
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 4.8e-54 214.9 189 61.9
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 3.1e-53 212.2 163 65.6
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 1.1e-50 203.8 157 55.4
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 1.9e-50 203.0 123 74.8
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 1.6e-49 199.9 127 73.2
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 3.6e-49 198.7 174 56.9
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 3.4e-47 192.2 132 68.2
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 3.7e-46 188.7 147 55.1
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 4.9e-46 188.3 127 64.6
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 2.0e-44 183.0 156 56.4
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 3.5e-44 182.2 156 62.2
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 1.0e-43 180.6 158 60.8
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 2.3e-43 179.5 158 53.8
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 2.3e-40 169.5 153 54.9
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 3.5e-36 155.6 108 65.7
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 3.6e-33 145.6 92 68.5
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 7.5e-31 137.9 102 68.6
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 9.2e-29 131.0 114 57.9
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 9.2e-29 131.0 77 72.7
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 1.5e-26 123.6 73 80.8
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.3e-14 84.0 50 76.0
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 5.1e-11 72.0 50 66.0
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.9e-10 70.1 78 47.4
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 7.3e-10 68.2 34 88.2
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 3.6e-09 65.9 43 67.4
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 4.7e-09 65.5 53 62.3
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 6.2e-09 65.1 47 66.0
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 3.4e-07 59.3 39 61.5


User provided reference genes

Program Settings