Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.4e-156 556.2 277 100.0
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.1e-145 520.0 277 93.9
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.5e-131 471.5 297 82.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.5e-129 466.5 287 84.0
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.2e-128 463.4 300 79.0
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 8.0e-128 460.7 248 90.7
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 6.8e-127 457.6 296 79.7
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 5.7e-126 454.5 248 89.1
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.5e-126 454.1 293 81.2
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 4.9e-125 451.4 296 78.7
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 4.6e-123 444.9 290 76.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.3e-122 443.4 290 77.2
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 6.6e-122 441.0 247 87.0
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 8.6e-122 440.7 282 79.4
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.9e-121 439.5 242 88.0
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 4.0e-119 431.8 245 85.7
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.0e-119 431.8 255 79.6
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.0e-119 431.8 255 79.6
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.2e-119 431.4 266 79.3
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.2e-118 430.3 255 79.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.0e-118 429.5 245 83.3
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.0e-118 429.5 242 83.5
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.6e-118 429.1 248 83.5
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.4e-118 428.7 242 85.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.4e-118 428.7 245 83.3
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 4.4e-118 428.3 242 83.9
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 4.4e-118 428.3 242 84.7
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 4.4e-118 428.3 245 83.3
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.4e-118 428.3 251 81.3
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 5.8e-118 427.9 242 86.0
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 5.8e-118 427.9 242 86.0
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 5.8e-118 427.9 242 86.0
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 7.5e-118 427.6 242 85.5
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 9.8e-118 427.2 246 83.7
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.3e-117 426.8 242 86.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.2e-117 426.0 244 84.4
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.9e-117 425.6 244 83.6
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.9e-117 425.6 261 78.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.9e-117 425.6 247 83.8
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.9e-117 424.9 244 82.8
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 6.4e-117 424.5 245 81.6
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 8.3e-117 424.1 242 83.9
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 8.3e-117 424.1 255 80.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 8.3e-117 424.1 246 82.1
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.1e-116 423.7 240 85.4
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.4e-116 423.3 243 84.0
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.9e-116 422.9 245 83.7
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 5.4e-116 421.4 246 80.1
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 7.0e-116 421.0 242 83.9
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.2e-115 420.2 242 81.4
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-115 419.9 246 80.1
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 6.0e-115 417.9 253 76.3
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 6.0e-115 417.9 246 82.1
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 7.8e-115 417.5 242 83.1
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 7.8e-115 417.5 246 78.9
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.0e-114 417.2 246 80.9
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.3e-114 416.8 247 80.6
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.7e-114 416.4 254 78.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.0e-114 415.6 247 81.0
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.0e-114 415.6 253 75.9
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 3.9e-114 415.2 242 79.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 5.0e-114 414.8 253 75.9
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 6.6e-114 414.5 243 80.7
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.1e-113 413.7 246 76.8
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.5e-113 412.5 242 78.9
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 4.3e-113 411.8 264 75.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.6e-112 409.8 245 80.0
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.6e-112 409.8 242 79.8
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.6e-112 409.8 242 81.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.8e-112 409.1 242 80.2
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 3.6e-112 408.7 242 79.3
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 6.2e-112 407.9 245 79.2
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 8.1e-112 407.5 242 78.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 8.1e-112 407.5 241 80.1
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.1e-111 407.1 246 77.2
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.3e-111 406.0 261 76.6
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 4.0e-111 405.2 242 79.8
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 6.8e-111 404.4 257 77.0
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.4e-110 402.1 242 77.7
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 5.8e-110 401.4 246 76.0
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.3e-109 400.2 243 79.0
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 4.9e-109 398.3 256 75.0
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.4e-108 396.7 245 75.5
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 7.1e-108 394.4 246 76.8
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 3.5e-107 392.1 274 71.5
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.5e-107 392.1 242 76.4
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 5.6e-105 384.8 242 73.6
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 7.3e-105 384.4 242 75.2
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.2e-104 383.6 242 73.1
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.1e-104 382.9 262 73.3
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 8.1e-104 380.9 242 77.3
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.3e-103 379.4 336 60.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.7e-101 372.1 234 77.4
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-100 370.2 250 70.8
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.4e-100 370.2 257 72.0
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 4.1e-100 368.6 380 55.0
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.1e-99 366.3 250 72.0
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 4.6e-99 365.2 215 80.0
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 2.5e-97 359.4 218 77.5
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.5e-94 350.1 240 68.3
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.5e-94 350.1 249 70.7
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.3e-93 347.1 274 64.2
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.2e-93 346.3 241 71.8
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 6.4e-93 344.7 216 72.2
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.6e-91 340.1 256 66.4
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 3.9e-90 335.5 242 71.9
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 8.1e-88 327.8 241 63.1
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-87 326.6 212 76.4
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 5.4e-84 315.1 225 68.0
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.4e-81 304.7 233 65.7
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 9.6e-81 304.3 184 76.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.8e-80 302.8 167 88.6
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 3.0e-74 282.7 212 62.7
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 7.4e-73 278.1 242 55.4
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.2e-70 270.8 176 76.7
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 8.4e-69 264.6 164 78.0
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.1e-67 260.0 253 54.9
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 1.0e-66 257.7 248 50.8
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.3e-66 257.3 159 78.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 8.7e-66 254.6 224 59.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.3e-64 250.8 141 85.8
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 2.7e-59 233.0 191 63.9
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.9e-59 231.5 140 79.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.0e-58 231.1 206 61.7
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 5.1e-58 228.8 246 54.5
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.9e-57 226.9 237 43.9
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.7e-56 222.6 137 78.8
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.5e-52 209.9 130 78.5
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.8e-50 203.8 165 61.8
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.9e-50 202.6 126 79.4
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 6.7e-50 201.8 238 44.5
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.1e-47 194.5 118 76.3
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.2e-46 191.0 110 80.9
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.3e-45 187.6 110 82.7
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.7e-45 187.2 115 73.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 5.0e-45 185.7 127 72.4
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 5.5e-44 182.2 136 66.9
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 5.5e-44 182.2 136 66.9
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.8e-42 177.2 237 40.5
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.3e-42 176.8 101 80.2
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.8e-39 167.2 164 55.5
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.7e-38 161.8 92 83.7
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.8e-37 159.5 219 41.6
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.1e-36 157.9 103 69.9
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.3e-34 150.2 221 39.8
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 4.0e-34 149.4 77 89.6
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 7.5e-33 145.2 81 84.0
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.5e-33 145.2 82 75.6
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 5.3e-31 139.0 74 83.8
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 3.5e-30 136.3 74 81.1
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 7.7e-30 135.2 67 92.5
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.5e-25 120.9 242 34.3
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.1e-23 113.2 56 87.5
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.4e-23 112.5 61 83.6
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 2.0e-22 110.5 82 63.4
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.2e-21 107.1 57 82.5
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 6.8e-18 95.5 53 77.4
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.2e-17 94.7 55 80.0
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 5.7e-17 92.4 51 78.4
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.7e-14 83.6 114 42.1
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 3.5e-14 83.2 48 72.9
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.5e-14 83.2 59 57.6
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 3.6e-11 73.2 100 42.0
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 4.4e-09 66.2 45 66.7
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 8.3e-08 62.0 74 47.3


User provided reference genes

Program Settings