Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 3.2e-198 694.9 349 100.0
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 3.1e-169 598.6 349 86.5
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 4.5e-168 594.7 349 86.2
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 3.8e-167 591.7 349 85.4
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 7.2e-166 587.4 349 84.2
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 9.3e-166 587.0 350 85.1
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 7.9e-165 583.9 355 82.8
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 1.8e-164 582.8 349 83.1
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 2.3e-164 582.4 355 83.1
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 6.7e-164 580.9 347 83.0
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 4.8e-154 548.1 354 78.2
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.0e-152 542.7 349 77.4
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 5.9e-152 541.2 349 76.5
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 7.2e-150 534.3 348 75.6
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.6e-149 533.1 349 74.8
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 1.6e-149 533.1 349 75.1
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 3.6e-149 531.9 349 73.9
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 4.7e-149 531.6 349 75.4
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 1.8e-148 529.6 349 75.9
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 1.1e-147 526.9 349 75.1
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.5e-147 526.6 349 74.5
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 3.3e-147 525.4 347 73.2
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.7e-147 524.6 349 74.2
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 7.4e-147 524.2 349 72.8
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 2.2e-146 522.7 350 73.1
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.7e-146 521.9 349 72.5
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 1.1e-145 520.4 379 69.9
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 5.9e-144 514.6 306 78.8
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 1.0e-143 513.8 349 71.1
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 2.2e-143 512.7 349 71.1
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 3.8e-143 511.9 349 71.9
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 5.0e-143 511.5 348 71.6
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 1.5e-142 510.0 351 70.9
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.5e-142 510.0 349 71.3
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.9e-142 509.6 353 71.7
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 9.4e-142 507.3 350 71.1
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.7e-141 505.8 351 71.8
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.6e-141 505.4 349 70.5
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 8.0e-141 504.2 349 71.3
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 8.0e-141 504.2 349 69.9
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.0e-140 503.8 349 71.9
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 2.3e-140 502.7 378 66.9
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 6.7e-140 501.1 336 73.2
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 6.7e-140 501.1 336 73.2
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 2.6e-139 499.2 349 70.5
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 9.7e-139 497.3 318 76.7
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.2e-138 496.1 318 76.4
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.8e-138 495.7 349 70.2
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 1.8e-137 493.0 329 71.1
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 4.1e-137 491.9 350 71.4
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 4.1e-137 491.9 350 69.1
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 9.1e-137 490.7 347 70.6
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.2e-136 490.3 361 65.9
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 1.6e-136 490.0 347 68.9
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 2.0e-136 489.6 304 75.3
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 2.7e-136 489.2 341 70.1
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 2.7e-136 489.2 318 76.4
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 4.5e-136 488.4 352 69.3
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 4.5e-136 488.4 336 70.2
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.0e-135 487.3 349 69.3
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.1e-134 483.8 348 68.1
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.5e-134 483.4 306 75.2
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.9e-134 483.0 349 67.9
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.2e-134 482.3 334 70.7
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 4.2e-134 481.9 316 73.1
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.2e-133 480.3 310 73.2
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 1.2e-133 480.3 350 67.1
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 3.6e-133 478.8 329 69.6
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 8.0e-133 477.6 352 67.0
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.4e-132 476.9 349 68.2
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.0e-132 475.7 347 67.7
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.0e-132 475.7 311 73.0
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.0e-131 473.0 310 71.9
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 1.2e-128 463.8 383 61.1
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 5.9e-128 461.5 329 69.6
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 5.0e-127 458.4 303 74.9
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 1.0e-124 450.7 322 67.7
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.0e-124 450.7 316 70.6
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 1.8e-124 449.9 347 62.5
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 3.0e-124 449.1 316 69.6
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 4.0e-124 448.7 352 63.1
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 4.0e-124 448.7 279 74.2
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 5.2e-124 448.4 326 65.0
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.0e-123 446.4 318 70.1
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 3.4e-123 445.7 352 63.4
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 3.4e-123 445.7 349 64.5
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 9.8e-123 444.1 308 68.8
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 1.7e-122 443.4 318 68.6
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 2.8e-122 442.6 310 70.0
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 2.8e-122 442.6 318 69.5
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 2.8e-122 442.6 332 66.6
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 3.7e-122 442.2 347 69.2
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 4.9e-122 441.8 314 68.8
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 6.3e-122 441.4 342 62.9
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 1.4e-121 440.3 341 63.9
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 1.8e-121 439.9 349 63.6
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.1e-121 438.7 284 73.9
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.2e-120 437.2 346 61.8
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 2.0e-120 436.4 296 74.0
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 4.5e-120 435.3 361 60.7
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 4.5e-120 435.3 280 73.6
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.7e-119 433.3 279 72.8
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 8.6e-119 431.0 279 72.8
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 4.3e-118 428.7 329 63.2
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 4.3e-118 428.7 326 63.5
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 4.3e-118 428.7 320 64.4
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 5.6e-118 428.3 341 61.0
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 7.3e-118 427.9 337 61.7
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 9.5e-118 427.6 344 61.3
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 2.8e-117 426.0 312 67.9
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 1.0e-116 424.1 337 61.4
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 1.0e-116 424.1 337 61.4
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.5e-115 420.2 337 60.5
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 4.9e-114 415.2 337 59.9
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 5.4e-113 411.8 311 62.1
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.0e-112 409.8 326 60.1
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.1e-110 404.1 311 66.2
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 4.7e-109 398.7 387 55.6
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 3.4e-107 392.5 322 63.4
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 9.8e-107 391.0 317 63.7
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 5.4e-105 385.2 264 72.0
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.7e-103 380.2 282 62.4
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 8.6e-103 377.9 344 58.7
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 5.6e-102 375.2 344 58.4
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 3.6e-101 372.5 303 57.8
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 4.0e-100 369.0 251 69.7
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 7.5e-99 364.8 332 56.3
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 9.9e-99 364.4 321 54.2
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 7.1e-97 358.2 326 54.9
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 4.6e-96 355.5 318 59.1
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 6.0e-96 355.1 309 53.4
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 8.9e-92 341.3 309 51.8
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 4.6e-88 328.9 321 51.1
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 3.9e-87 325.9 343 48.1
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 1.5e-86 323.9 235 63.0
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 3.1e-84 316.2 318 56.0
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.9e-81 307.0 207 73.4
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.0e-79 301.2 281 53.4
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.5e-78 297.4 232 63.8
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.4e-76 290.8 164 79.9
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 4.5e-67 259.2 207 64.7
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.0e-58 231.5 162 64.2
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.0e-58 231.5 162 64.2
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 3.8e-58 229.6 140 75.7
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 7.2e-49 198.7 112 80.4
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 1.2e-43 181.4 358 30.7
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.7e-42 177.6 109 78.0
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 8.5e-42 175.3 118 68.6
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 4.8e-37 159.5 308 34.4
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.2e-35 154.8 164 49.4
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.7e-34 151.0 129 58.9
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 3.8e-34 149.8 319 30.1
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 7.7e-27 125.6 179 43.6
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 7.7e-27 125.6 372 31.2
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 4.0e-23 113.2 90 62.2
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.1e-17 95.1 281 27.4
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 5.5e-17 92.8 105 43.8


User provided reference genes

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