Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0023086 Lotus japonicus HOM05D005680 ORTHO05D006334 1.4e-44 182.6 94 100.0
Lj4g0022522 Lotus japonicus HOM05D005680 ORTHO05D006334 8.4e-37 156.8 96 90.6
Glyma.05G103100 Glycine max HOM05D005680 ORTHO05D006334 1.1e-25 119.8 90 74.4
Phvul.003G237400 Phaseolus vulgaris HOM05D005680 ORTHO05D006334 1.5e-25 119.4 90 72.2
Glyma.17G164200 Glycine max HOM05D005680 ORTHO05D006334 2.5e-25 118.6 92 71.7
Lalb_Chr05g0226041 Lupinus albus HOM05D005680 ORTHO05D006334 4.8e-24 114.4 93 69.9
Ca_13933_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 8.2e-24 113.6 92 69.6
Medtr8g081540 Medicago truncatula HOM05D005680 ORTHO05D006334 7.6e-22 107.1 74 77.0
Medtr4g095330 Medicago truncatula HOM05D005680 ORTHO05D006334 1.0e-21 106.7 93 61.3
TPR.G23854 Trifolium pratense HOM05D005680 ORTHO05D006334 1.3e-21 106.3 93 66.7
arahy.Tifrunner.gnm1.ann1.C6RKPL Arachis hypogaea HOM05D005680 ORTHO05D006334 1.7e-21 105.9 85 70.6
Haze_15319 Corylus avellana HOM05D005680 ORTHO05D006334 1.4e-20 102.8 86 64.0
Ca_17983_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 2.5e-20 102.1 78 71.8
arahy.Tifrunner.gnm1.ann1.Y5V9TA Arachis hypogaea HOM05D005680 ORTHO05D006334 4.2e-20 101.3 82 69.5
Psat4g083200 Pisum sativum HOM05D005680 ORTHO05D006334 4.2e-20 101.3 94 60.6
Psat7g075160 Pisum sativum HOM05D005680 ORTHO05D006334 9.3e-20 100.1 74 70.3
Eucgr.H02278 Eucalyptus grandis HOM05D005680 ORTHO05D006334 2.1e-19 99.0 87 59.8
Ciclev10026786m.g Citrus clementina HOM05D005680 ORTHO05D006334 3.5e-19 98.2 102 56.9
Gohir.D11G205900 Gossypium hirsutum HOM05D005680 ORTHO05D006334 2.3e-18 95.5 92 58.7
Gorai.007G221000 Gossypium raimondii HOM05D005680 ORTHO05D006334 2.3e-18 95.5 92 58.7
Eucgr.H02273 Eucalyptus grandis HOM05D005680 ORTHO05D006334 3.9e-18 94.7 87 57.5
Gohir.A11G217600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 5.1e-18 94.4 92 57.6
MD02G1181800 Malus domestica HOM05D005680 ORTHO05D006334 1.5e-17 92.8 94 52.1
Manes.12G112300 Manihot esculenta HOM05D005680 ORTHO05D006334 1.5e-17 92.8 73 64.4
EL10Ac6g15662 Beta vulgaris HOM05D005680 ORTHO05D006334 1.9e-17 92.4 89 59.6
Atru.chr3.206 Acer truncatum HOM05D005680 ORTHO05D006334 5.7e-17 90.9 94 56.4
TAR625G0576 Trochodendron aralioides HOM05D005680 ORTHO05D006334 7.4e-17 90.5 93 53.8
Prupe.6G224700 Prunus persica HOM05D005680 ORTHO05D006334 9.7e-17 90.1 88 59.1
PGSC0003DMG400024942 Solanum tuberosum HOM05D005680 ORTHO05D006334 9.7e-17 90.1 98 55.1
CAN.G1075.10 Capsicum annuum HOM05D005680 ORTHO05D006334 1.3e-16 89.7 98 57.1
Sabra05G0114900 Salix brachista HOM05D005680 ORTHO05D006334 1.3e-16 89.7 71 66.2
TWI09G1440 Tripterygium wilfordii HOM05D005680 ORTHO05D006334 1.3e-16 89.7 96 58.3
Nn1g04629 Nelumbo nucifera HOM05D005680 ORTHO05D006334 2.2e-16 89.0 75 62.7
AUR62003966 Chenopodium quinoa HOM05D005680 ORTHO05D006334 2.8e-16 88.6 91 57.1
Sopen02g037260 Solanum pennellii HOM05D005680 ORTHO05D006334 3.7e-16 88.2 91 56.0
Ah.03g146390 Amaranthus hybridus HOM05D005680 ORTHO05D006334 4.8e-16 87.8 67 67.2
Duzib147G0030 Durio zibethinus HOM05D005680 ORTHO05D006334 4.8e-16 87.8 92 56.5
PGR102G2721 Punica granatum HOM05D005680 ORTHO05D006334 6.3e-16 87.4 53 79.2
TPR.G11882 Trifolium pratense HOM05D005680 ORTHO05D006334 6.3e-16 87.4 73 64.4
Sabra05G0116000 Salix brachista HOM05D005680 ORTHO05D006334 8.2e-16 87.0 71 64.8
TAR628G1700 Trochodendron aralioides HOM05D005680 ORTHO05D006334 8.2e-16 87.0 68 66.2
AUR62038279 Chenopodium quinoa HOM05D005680 ORTHO05D006334 1.1e-15 86.7 91 56.0
MD15G1292700 Malus domestica HOM05D005680 ORTHO05D006334 1.1e-15 86.7 88 53.4
Thecc.01G068000 Theobroma cacao HOM05D005680 ORTHO05D006334 1.1e-15 86.7 92 57.6
Rhsim10G0104100 Rhododendron simsii HOM05D003166 ORTHO05D003605 1.4e-15 86.3 70 64.3
Atru.chr13.75 Acer truncatum HOM05D005680 ORTHO05D006334 2.4e-15 85.5 90 51.1
TAR376G0914 Trochodendron aralioides HOM05D005680 ORTHO05D006334 2.4e-15 85.5 91 51.6
Potri.005G145200 Populus trichocarpa HOM05D005680 ORTHO05D006334 3.1e-15 85.1 72 65.3
COL.COLO4_11529 Corchorus olitorius HOM05D005680 ORTHO05D006334 4.1e-15 84.7 72 66.7
Oeu013277.1 Olea europaea HOM05D005680 ORTHO05D006334 4.1e-15 84.7 92 53.3
ClCG01G017300 Citrullus lanatus HOM05D005680 ORTHO05D006334 7.7e-14 80.5 95 50.5
PSO063G6705 Papaver somniferum HOM05D005680 ORTHO05D006334 7.7e-14 80.5 57 66.7
Aqoxy507s001 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 1.0e-13 80.1 68 52.9
Aqoxy5G00968 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 1.0e-13 80.1 68 52.9
MELO3C007608.2 Cucumis melo HOM05D005680 ORTHO05D006334 1.0e-13 80.1 95 51.6
Aqoxy7G01353 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 1.3e-13 79.7 72 56.9
RcHm_v2.0_Chr2g0107321 Rosa chinensis HOM05D005680 ORTHO05D006334 1.3e-13 79.7 69 63.8
Sc25g0001410 Simmondsia chinensis HOM05D005680 ORTHO05D006334 1.7e-13 79.3 101 51.5
HanXRQChr12g0377211 Helianthus annuus HOM05D005680 ORTHO05D006334 2.9e-13 78.6 80 57.5
FAN28G2165 Fragaria x ananassa HOM05D005680 ORTHO05D006334 3.8e-13 78.2 86 52.3
Nitab4.5_0000419g0130 Nicotiana tabacum HOM05D005680 ORTHO05D006334 3.8e-13 78.2 64 60.9
Potri.002G006000 Populus trichocarpa HOM05D005680 ORTHO05D006334 3.8e-13 78.2 99 50.5
Nitab4.5_0003878g0080 Nicotiana tabacum HOM05D005680 ORTHO05D006334 5.0e-13 77.8 76 55.3
FAN02G2432 Fragaria x ananassa HOM05D005680 ORTHO05D006334 6.5e-13 77.4 69 60.9
FAN23G0577 Fragaria x ananassa HOM05D005680 ORTHO05D006334 6.5e-13 77.4 87 51.7
FAN26G2100 Fragaria x ananassa HOM05D005680 ORTHO05D006334 6.5e-13 77.4 69 60.9
Nitab4.5_0007941g0020 Nicotiana tabacum HOM05D005680 ORTHO05D006334 6.5e-13 77.4 67 58.2
SalBow5G4637 Salvia bowleyana HOM05D005680 ORTHO05D006334 8.5e-13 77.0 95 48.4
Sc19g0003710 Simmondsia chinensis HOM05D005680 ORTHO05D006334 8.5e-13 77.0 75 58.7
FvH4_1g17140 Fragaria vesca HOM05D005680 ORTHO05D006334 1.4e-12 76.3 87 50.6
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.9e-12 75.9 59 59.3
Duzib052G1168 Durio zibethinus HOM05D005680 ORTHO05D006334 1.9e-12 75.9 66 62.1
Sabra02G0004200 Salix brachista HOM05D005680 ORTHO05D006334 1.9e-12 75.9 99 48.5
PGR031G2681 Punica granatum HOM05D005680 ORTHO05D006334 3.2e-12 75.1 48 70.8
QL02p015306 Quercus lobata HOM05D005680 ORTHO05D006334 3.2e-12 75.1 54 64.8
FAN19G0782 Fragaria x ananassa HOM05D005680 ORTHO05D006334 4.2e-12 74.7 87 50.6
Thecc.02G019100 Theobroma cacao HOM05D005680 ORTHO05D006334 4.2e-12 74.7 68 61.8
BcaB06g28712 Brassica carinata HOM05D005680 ORTHO05D006334 5.5e-12 74.3 51 66.7
BcaC01g05829 Brassica carinata HOM05D005680 ORTHO05D006334 5.5e-12 74.3 51 66.7
A04p25910 Brassica napus HOM05D005680 ORTHO05D006334 5.5e-12 74.3 51 66.7
C03p22000 Brassica napus HOM05D005680 ORTHO05D006334 5.5e-12 74.3 51 66.7
BraA04t18094Z Brassica rapa HOM05D005680 ORTHO05D006334 5.5e-12 74.3 51 66.7
ECA246G0256 Erigeron canadensis HOM05D005680 ORTHO05D006334 5.5e-12 74.3 89 49.4
THA.LOC104806914 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 5.5e-12 74.3 60 61.7
SalBow1G8512 Salvia bowleyana HOM05D005680 ORTHO05D006334 7.2e-12 73.9 81 50.6
Carub.0004s1530 Capsella rubella HOM05D005680 ORTHO05D006334 1.6e-11 72.8 58 56.9
MELO3C017050.2 Cucumis melo HOM05D005680 ORTHO05D006334 1.6e-11 72.8 72 54.2
DCAR_003112 Daucus carota HOM05D005680 ORTHO05D006334 1.6e-11 72.8 69 63.8
Sp4g16030 Schrenkiella parvula HOM05D005680 ORTHO05D006334 1.6e-11 72.8 51 64.7
CsaV3_6G043830 Cucumis sativus L. HOM05D005680 ORTHO05D006334 2.1e-11 72.4 56 62.5
Sed0000508 Sechium edule HOM05D005680 ORTHO05D006334 2.1e-11 72.4 97 49.5
BcaB01g03924 Brassica carinata HOM05D005680 ORTHO05D006334 3.6e-11 71.6 51 62.7
THA.LOC104819870 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 4.6e-11 71.2 71 59.2
ClCG11G018960 Citrullus lanatus HOM05D005680 ORTHO05D006334 6.1e-11 70.9 73 52.1
CsaV3_4G037560 Cucumis sativus L. HOM05D005680 ORTHO05D006334 6.1e-11 70.9 72 52.8
AL4G29360 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 7.9e-11 70.5 63 57.1
BcaC02g07811 Brassica carinata HOM05D005680 ORTHO05D006334 1.0e-10 70.1 51 62.7
C04p63190 Brassica napus HOM05D005680 ORTHO05D006334 1.0e-10 70.1 51 62.7
CARHR127690 Cardamine hirsuta HOM05D005680 ORTHO05D006334 1.0e-10 70.1 51 60.8
Nn1g04362 Nelumbo nucifera HOM05D005680 ORTHO05D006334 1.0e-10 70.1 63 54.0
Aa31LG9G13590 Aethionema arabicum HOM05D005680 ORTHO05D006334 1.4e-10 69.7 66 54.5
CANSAT01G2162 Cannabis sativa HOM05D005680 ORTHO05D006334 1.4e-10 69.7 78 57.7
Cpa.g.sc6.54 Carica papaya HOM05D005680 ORTHO05D006334 1.4e-10 69.7 55 65.5
ATR0605G143 Amborella trichopoda HOM05D005680 ORTHO05D006334 1.8e-10 69.3 83 51.8
CDE04G1110 Ceratophyllum demersum HOM05D005680 ORTHO05D006334 1.8e-10 69.3 68 51.5
Thhalv10017732m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 2.3e-10 68.9 58 53.4
Carub.0004s0232 Capsella rubella HOM05D005680 ORTHO05D006334 3.9e-10 68.2 94 46.8
CARHR114400 Cardamine hirsuta HOM05D005680 ORTHO05D006334 3.9e-10 68.2 69 55.1
COL.COLO4_17729 Corchorus olitorius HOM05D005680 ORTHO05D006334 3.9e-10 68.2 54 63.0
AT2G33690 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 5.1e-10 67.8 61 57.4
Dinv38141 Davidia involucrata HOM05D000032 ORTHO05D004656 5.1e-10 67.8 75 49.3
SHI12592 Sapria himalayana HOM05D005680 ORTHO05D006334 2.5e-09 65.5 74 44.6
AT2G23110 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 3.3e-09 65.1 69 53.6
Gohir.A04G133600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 5.7e-09 64.3 66 50.0
ATR0030G059 Amborella trichopoda HOM05D005680 ORTHO05D006334 7.4e-09 63.9 57 61.4
Cpa.g.sc88.61 Carica papaya HOM05D005680 ORTHO05D006334 7.4e-09 63.9 69 50.7
Lsat_1_v5_gn_3_87720 Lactuca sativa HOM05D005680 ORTHO05D006334 1.3e-08 63.2 50 60.0
Gorai.012G169600 Gossypium raimondii HOM05D005680 ORTHO05D006334 2.2e-08 62.4 64 46.9
Gohir.D04G176700 Gossypium hirsutum HOM05D005680 ORTHO05D006334 2.8e-08 62.0 64 46.9
Zm00001eb316370 Zea mays HOM05D031961 ORTHO05D006334 2.8e-08 62.0 111 38.7
CARHR114390 Cardamine hirsuta HOM05D013772 ORTHO05D006334 1.1e-07 60.1 44 65.9
Lalb_Chr23g0265551 Lupinus albus HOM05D005680 ORTHO05D006334 1.8e-07 59.3 63 54.0
Thhalv10000392m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 2.4e-07 58.9 96 39.6
HPP92_012496 Vanilla planifolia HOM05D005680 ORTHO05D006334 4.1e-07 58.2 53 54.7
AT2G23120 Arabidopsis thaliana HOM05D013772 ORTHO05D006334 6.9e-07 57.4 54 57.4
AL4G12960 Arabidopsis lyrata HOM05D013772 ORTHO05D006334 2.6e-06 55.5 62 51.6
Carub.0004s0233 Capsella rubella HOM05D013772 ORTHO05D006334 2.6e-06 55.5 44 61.4
Aa31LG7G13780 Aethionema arabicum HOM05D005680 ORTHO05D006334 3.4e-06 55.1 37 62.2
Cfa014129 Carpinus fangiana HOM05D005680 ORTHO05D006334 4.5e-06 54.7 70 45.7
Sp4g02150 Schrenkiella parvula HOM05D005680 ORTHO05D006334 4.5e-06 54.7 93 38.7


User provided reference genes

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