Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.6e-305 1051.6 676 100.0
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.1e-74 285.4 173 76.9
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 3.0e-59 234.2 158 69.0
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 3.0e-59 234.2 158 69.0
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 8.7e-59 232.6 177 66.1
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 1.5e-58 231.9 176 65.3
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 9.6e-58 229.2 151 68.2
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.6e-57 228.4 151 68.2
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.6e-57 228.4 151 68.2
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.1e-56 225.7 163 66.3
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-56 225.7 156 64.7
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 3.1e-56 224.2 159 64.8
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 5.3e-56 223.4 161 63.4
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 6.9e-56 223.0 161 66.5
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 4.4e-55 220.3 157 62.4
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.3e-54 218.8 160 65.0
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.7e-54 218.4 152 67.8
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.2e-54 218.0 152 65.1
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 2.2e-54 218.0 171 61.4
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 2.9e-54 217.6 171 61.4
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 3.8e-54 217.2 177 60.5
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 3.8e-54 217.2 169 61.5
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.9e-54 216.9 151 67.5
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 6.4e-54 216.5 163 60.1
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 8.4e-54 216.1 179 59.2
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 8.4e-54 216.1 151 66.2
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.1e-53 215.7 152 64.5
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.1e-53 215.7 152 64.5
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-53 215.7 152 63.8
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.4e-53 215.3 151 66.2
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.4e-53 215.3 151 66.9
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.9e-53 214.9 151 64.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 2.4e-53 214.5 168 58.9
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.4e-53 214.5 168 58.9
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 4.2e-53 213.8 163 61.3
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 5.4e-53 213.4 151 64.9
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 5.4e-53 213.4 182 58.8
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 5.4e-53 213.4 151 66.2
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 9.3e-53 212.6 151 64.2
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.2e-52 212.2 154 63.0
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.6e-52 211.8 161 60.2
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 2.1e-52 211.5 152 65.8
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 2.1e-52 211.5 163 60.1
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 2.1e-52 211.5 166 61.4
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 2.7e-52 211.1 175 59.4
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 2.7e-52 211.1 173 60.7
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.7e-52 211.1 159 61.0
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.7e-52 211.1 159 61.0
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 3.5e-52 210.7 175 60.6
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 3.5e-52 210.7 168 58.9
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 6.0e-52 209.9 170 56.5
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 7.9e-52 209.5 153 63.4
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.3e-51 208.8 151 64.2
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.7e-51 208.4 151 64.2
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.7e-51 208.4 151 64.2
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.7e-51 208.4 169 59.8
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.3e-51 208.0 151 64.2
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 3.9e-51 207.2 173 59.5
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 3.9e-51 207.2 173 59.5
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 5.1e-51 206.8 173 59.5
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 6.6e-51 206.5 182 59.3
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 8.7e-51 206.1 151 62.3
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 8.7e-51 206.1 169 59.2
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 8.7e-51 206.1 169 57.4
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 8.7e-51 206.1 169 57.4
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.5e-50 205.3 162 61.7
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 9.6e-50 202.6 151 62.9
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.3e-49 202.2 152 61.2
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.6e-49 201.8 151 60.9
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 2.1e-49 201.4 153 58.8
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.4e-48 198.7 168 57.7
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 5.3e-48 196.8 180 53.3
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 3.4e-47 194.1 457 34.6
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.6e-47 193.0 161 55.9
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 9.9e-47 192.6 134 65.7
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.3e-46 192.2 142 62.0
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.7e-46 191.8 504 34.5
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 6.4e-46 189.9 391 35.8
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 8.4e-46 189.5 176 51.7
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.4e-46 189.5 180 51.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.1e-45 189.1 163 57.1
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-45 189.1 167 53.3
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-45 189.1 167 53.3
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-45 189.1 167 53.3
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-45 189.1 167 53.3
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.4e-45 188.7 151 58.9
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.4e-45 188.7 158 57.0
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.9e-45 188.3 180 51.7
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 3.2e-45 187.6 142 60.6
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 9.3e-45 186.0 140 60.0
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.2e-44 185.7 147 58.5
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-44 185.7 147 59.2
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 2.1e-44 184.9 176 50.6
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 1.8e-43 181.8 151 56.3
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-43 181.8 146 56.2
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 3.0e-43 181.0 328 38.7
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.5e-42 177.9 148 53.4
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 4.3e-42 177.2 149 54.4
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 1.6e-41 175.3 130 64.6
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.4e-40 172.2 179 48.6
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.1e-40 171.0 118 65.3
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.1e-40 171.0 142 52.8
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 2.6e-39 167.9 173 47.4
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 5.8e-39 166.8 132 61.4
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.0e-38 166.0 179 50.3
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 6.5e-38 163.3 144 54.9
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 2.5e-37 161.4 160 47.5
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 3.2e-37 161.0 134 57.5
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 7.1e-37 159.8 136 56.6
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.7e-36 157.9 139 58.3
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.0e-35 156.0 176 46.6
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.0e-35 156.0 134 56.7
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 1.8e-35 155.2 555 30.3
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-35 155.2 170 46.5
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.5e-34 152.1 98 69.4
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 4.8e-33 147.1 98 66.3
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.3e-30 139.0 124 54.0
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.2e-30 138.3 102 63.7
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.9e-29 135.2 94 67.0
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 5.5e-29 133.7 135 45.2
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 2.7e-28 131.3 98 62.2
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 4.6e-28 130.6 172 43.6
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 4.6e-28 130.6 172 43.6
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 1.3e-27 129.0 97 61.9
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.3e-26 124.4 553 28.9
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 1.4e-24 119.0 140 43.6
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 5.3e-24 117.1 139 40.3
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 2.6e-23 114.8 118 50.8
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.2e-21 106.7 98 49.0
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 7.9e-20 103.2 120 45.0
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 8.8e-19 99.8 91 50.5
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.5e-18 99.0 71 64.8
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.6e-18 98.2 56 73.2
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 2.6e-18 98.2 79 57.0
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.2e-17 95.1 106 48.1
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 8.2e-17 93.2 65 67.7
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 6.9e-16 90.1 64 65.6
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 3.4e-15 87.8 59 64.4
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.8e-14 84.3 66 60.6
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 3.2e-13 81.3 70 57.1
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 5.5e-13 80.5 52 69.2
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 7.2e-13 80.1 55 67.3
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.0e-11 76.3 65 56.9
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.3e-11 75.1 70 52.9
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 5.2e-11 73.9 54 61.1
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 5.2e-11 73.9 54 61.1
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 3.7e-09 67.8 71 43.7
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.4e-08 65.9 71 49.3


User provided reference genes

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