Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 1.5e-158 562.8 285 100.0
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 9.8e-121 437.2 289 79.6
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 1.7e-120 436.4 285 78.6
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 3.7e-120 435.3 287 79.1
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 5.5e-116 421.4 295 77.6
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.6e-115 419.9 291 75.9
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 8.3e-112 407.5 284 76.1
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 3.1e-111 405.6 291 74.9
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 4.7e-107 391.7 285 74.0
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.2e-105 387.1 291 71.5
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 1.5e-100 370.2 288 70.1
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.9e-100 369.8 243 77.0
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 3.6e-99 365.5 261 70.9
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 4.7e-99 365.2 269 73.6
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 3.1e-98 362.5 227 80.6
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 4.0e-98 362.1 220 82.7
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 2.6e-97 359.4 247 74.5
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 2.6e-97 359.4 229 79.9
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 2.6e-97 359.4 224 81.2
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 7.5e-97 357.8 250 74.4
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.7e-96 356.7 255 74.9
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 1.7e-96 356.7 280 69.3
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.2e-96 356.3 228 78.5
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.9e-96 355.9 219 80.4
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 2.9e-96 355.9 257 71.2
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 3.7e-96 355.5 257 71.2
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 6.4e-96 354.8 227 80.2
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 8.3e-96 354.4 220 79.5
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 8.3e-96 354.4 236 75.0
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.1e-95 354.0 283 69.6
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 1.1e-95 354.0 249 73.5
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 1.4e-95 353.6 230 78.3
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 1.9e-95 353.2 213 84.0
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 1.9e-95 353.2 279 70.3
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.9e-95 353.2 280 68.6
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 3.2e-95 352.4 226 78.8
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 4.1e-95 352.1 226 78.8
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 4.1e-95 352.1 226 78.3
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 7.0e-95 351.3 257 70.0
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.2e-94 350.5 236 73.7
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.2e-94 350.5 259 71.8
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 1.6e-94 350.1 281 65.8
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 3.5e-94 349.0 214 80.8
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 3.5e-94 349.0 284 67.6
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.5e-94 349.0 280 67.5
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.5e-94 349.0 284 67.6
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 3.5e-94 349.0 250 71.6
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.3e-93 347.1 292 63.7
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 1.7e-93 346.7 214 82.2
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 3.0e-93 345.9 227 76.2
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 5.0e-93 345.1 220 77.3
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 1.1e-92 344.0 228 74.6
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 1.1e-92 344.0 228 74.6
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 1.1e-92 344.0 220 80.9
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 1.5e-92 343.6 279 65.2
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 1.5e-92 343.6 227 75.3
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.5e-92 343.6 280 66.4
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.9e-92 343.2 219 75.8
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 9.5e-92 340.9 228 74.1
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.2e-91 340.5 269 65.4
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.2e-91 340.5 269 65.4
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 1.2e-91 340.5 227 73.1
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.6e-91 340.1 220 76.8
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 2.1e-91 339.7 225 73.8
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 2.1e-91 339.7 274 65.0
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 2.1e-91 339.7 230 75.7
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 2.8e-91 339.3 225 73.8
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 2.8e-91 339.3 276 65.9
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 2.8e-91 339.3 226 75.7
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 4.7e-91 338.6 277 65.7
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 4.7e-91 338.6 283 65.0
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 4.7e-91 338.6 221 76.5
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.4e-90 337.0 219 77.2
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 2.3e-90 336.3 228 74.1
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 2.3e-90 336.3 194 84.0
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 3.1e-90 335.9 275 65.1
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 4.0e-90 335.5 258 69.4
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 4.0e-90 335.5 283 63.3
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 3.4e-89 332.4 265 64.5
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 4.4e-89 332.0 275 66.5
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 2.2e-88 329.7 211 76.3
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.4e-87 326.2 183 85.2
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.1e-87 325.5 280 64.6
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 3.5e-86 322.4 184 83.7
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 3.5e-86 322.4 306 61.1
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.7e-85 320.1 203 76.8
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 3.9e-85 318.9 266 64.7
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 3.6e-83 312.4 236 67.8
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 4.7e-83 312.0 170 88.8
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.4e-82 310.5 262 64.9
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 7.6e-81 304.7 329 53.5
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.4e-79 300.4 215 70.2
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 4.2e-79 298.9 186 79.0
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 1.1e-76 290.8 209 72.2
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 2.5e-76 289.7 227 65.2
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 9.6e-76 287.7 227 65.2
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 5.3e-74 282.0 198 72.2
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 2.0e-73 280.0 226 66.8
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 3.4e-73 279.3 208 70.7
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 7.6e-73 278.1 192 71.4
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 2.7e-70 269.6 242 60.3
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 1.7e-69 266.9 226 61.5
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 1.7e-69 266.9 194 66.0
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 3.1e-66 256.1 162 79.0
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 3.2e-55 219.5 222 57.2
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 3.2e-55 219.5 271 51.7
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 8.7e-53 211.5 121 83.5
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.4e-50 204.1 120 84.2
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 3.2e-47 193.0 217 48.8
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 6.7e-45 185.3 201 46.8
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 7.4e-44 181.8 225 48.0
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 4.1e-42 176.0 207 47.8
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 4.5e-41 172.6 148 62.2
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 5.9e-41 172.2 121 72.7
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 3.2e-39 166.4 97 80.4
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 2.1e-38 163.7 97 79.4
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.7e-32 144.1 80 83.8
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 3.8e-32 142.9 279 36.2
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 3.8e-32 142.9 86 79.1
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 9.4e-31 138.3 111 66.7
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 7.9e-30 135.2 104 71.2
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 1.5e-28 131.0 184 42.4
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.3e-27 127.9 78 78.2
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 1.1e-20 104.8 71 71.8
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 1.4e-18 97.8 83 62.7
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.6e-17 94.4 141 47.5
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 1.3e-16 91.3 57 77.2
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 4.2e-15 86.3 50 78.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 5.5e-15 85.9 51 76.5
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 4.7e-14 82.8 55 74.5
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.2e-12 78.2 47 76.6
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 3.4e-12 76.6 48 75.0
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 1.6e-09 67.8 47 70.2
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 1.9e-07 60.8 82 42.7


User provided reference genes

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