Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 2.4e-235 818.5 435 100.0
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 6.7e-121 438.3 456 61.0
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 2.2e-108 396.7 452 56.6
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 1.0e-105 387.9 538 49.4
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 5.7e-104 382.1 461 54.0
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 2.0e-101 373.6 475 54.1
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.9e-99 367.1 436 54.1
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 3.2e-99 366.3 467 53.5
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 4.2e-99 365.9 316 66.5
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 1.5e-96 357.5 491 50.5
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 6.3e-95 352.1 420 54.3
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 6.3e-95 352.1 420 54.3
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 9.1e-94 348.2 449 52.1
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 2.0e-88 330.5 438 50.5
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 8.9e-73 278.5 494 43.5
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 7.5e-72 275.4 494 43.3
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 8.3e-71 271.9 509 40.3
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 5.0e-68 262.7 298 53.7
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 1.2e-66 258.1 305 49.8
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.6e-66 257.7 389 45.5
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 2.1e-66 257.3 409 44.7
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 1.0e-65 255.0 500 40.4
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 5.2e-65 252.7 464 41.2
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 1.5e-64 251.1 487 40.0
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 2.2e-63 247.3 454 40.7
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 3.7e-63 246.5 506 39.3
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 8.3e-63 245.4 443 41.5
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 1.1e-62 245.0 480 40.6
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 1.1e-62 245.0 453 41.5
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.4e-62 244.6 491 40.5
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 2.4e-62 243.8 322 47.2
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 4.1e-62 243.0 347 47.8
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 3.5e-61 240.0 310 48.4
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 1.3e-60 238.0 313 48.2
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.7e-60 237.7 296 49.0
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 3.0e-60 236.9 310 47.4
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.9e-60 236.5 310 47.4
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.9e-60 236.5 310 47.4
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.1e-59 235.0 449 39.9
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.1e-59 235.0 460 40.9
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.9e-59 234.2 343 47.5
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 3.3e-59 233.4 345 45.2
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.3e-59 233.4 335 45.4
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 3.3e-59 233.4 462 39.8
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 3.3e-59 233.4 423 42.3
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 7.3e-59 232.3 444 38.1
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 7.3e-59 232.3 450 40.7
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.2e-58 231.5 466 40.3
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.2e-58 231.5 358 44.7
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 2.1e-58 230.7 416 41.3
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 3.6e-58 229.9 444 40.5
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 4.7e-58 229.6 442 39.6
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 6.2e-58 229.2 444 40.5
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 8.1e-58 228.8 255 55.3
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.1e-57 228.4 318 47.5
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.8e-57 227.6 460 40.4
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 3.1e-57 226.9 422 38.6
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 4.0e-57 226.5 449 40.8
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.2e-56 224.9 448 40.2
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 1.2e-56 224.9 283 47.7
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 2.6e-56 223.8 279 47.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 3.4e-56 223.4 284 47.5
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 1.3e-55 221.5 285 46.3
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.3e-55 221.5 413 38.5
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 6.4e-55 219.2 282 46.1
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 5.4e-54 216.1 325 45.2
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 7.1e-54 215.7 410 40.2
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.7e-53 213.8 342 43.3
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.7e-53 213.8 296 46.6
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 3.5e-53 213.4 293 45.4
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 6.0e-53 212.6 284 43.7
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 1.3e-52 211.5 305 45.6
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 2.3e-52 210.7 436 38.1
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 3.0e-52 210.3 355 42.0
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 3.9e-52 209.9 281 45.9
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 5.1e-52 209.5 310 45.5
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 8.6e-52 208.8 352 41.5
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 2.5e-51 207.2 299 45.8
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 3.3e-51 206.8 370 40.8
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.8e-50 203.8 471 34.8
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 4.7e-50 203.0 310 45.5
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 2.3e-49 200.7 278 47.1
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 5.2e-49 199.5 279 46.6
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 5.2e-49 199.5 312 44.2
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.5e-48 198.0 278 46.0
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 2.6e-48 197.2 418 39.2
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 5.8e-48 196.1 364 39.8
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.1e-46 191.8 385 38.7
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.9e-46 191.0 392 39.0
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 7.1e-46 189.1 454 37.0
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 6.0e-45 186.0 368 39.4
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.0e-44 185.3 245 46.1
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 1.3e-44 184.9 382 40.1
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 2.5e-43 180.6 379 36.9
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.8e-42 177.2 333 39.3
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 5.2e-41 172.9 487 35.5
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 2.0e-40 171.0 323 38.1
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 3.4e-40 170.2 286 42.0
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 1.4e-38 164.9 250 44.4
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 4.2e-38 163.3 307 39.1
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 5.4e-38 162.9 320 38.8
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 7.1e-38 162.5 297 42.1
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 7.1e-38 162.5 297 42.1
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 9.3e-38 162.2 297 38.7
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.6e-37 161.4 442 34.4
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 2.1e-37 161.0 330 38.8
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 2.1e-37 161.0 330 38.8
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.0e-36 158.7 280 40.4
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 3.9e-36 156.8 478 33.5
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 4.3e-35 153.3 441 33.3
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 4.3e-35 153.3 188 48.4
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 7.3e-35 152.5 255 40.0
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 6.2e-34 149.4 336 36.0
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 1.8e-33 147.9 275 39.3
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 2.0e-32 144.4 472 32.8
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 7.6e-32 142.5 261 40.2
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 5.6e-27 126.3 287 34.5
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 5.3e-25 119.8 223 38.6
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.2e-24 118.6 195 39.5
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 2.0e-24 117.9 283 31.1
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 5.5e-22 109.8 271 33.2
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 2.4e-17 94.4 221 33.9
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 5.5e-14 83.2 407 29.0
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.6e-13 81.6 289 29.1
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 2.7e-13 80.9 271 28.0
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 2.1e-10 71.2 172 33.7
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 3.1e-09 67.4 325 27.1
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 3.8e-07 60.5 32 75.0
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.1e-06 58.9 84 48.8
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 1.4e-06 58.5 252 29.4


User provided reference genes

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