Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 2.0e-39 165.2 80 100.0
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 1.8e-32 142.1 80 85.0
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 1.0e-30 136.3 80 83.8
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 8.2e-25 116.7 67 86.6
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 5.9e-15 84.0 73 64.4
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 5.0e-14 80.9 84 60.7
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 1.9e-13 79.0 71 63.4
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 5.5e-13 77.4 69 63.8
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 9.4e-13 76.6 62 62.9
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 9.4e-13 76.6 77 50.6
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 2.7e-12 75.1 82 54.9
Glyma.08G039000 Glycine max HOM05D008067 ORTHO05D010226 3.6e-12 74.7 64 62.5
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 1.0e-11 73.2 88 52.3
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 1.5e-10 69.3 86 53.5
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 2.6e-10 68.6 70 57.1
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 2.6e-10 68.6 88 53.4
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 4.4e-10 67.8 67 53.7
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 4.4e-10 67.8 79 54.4
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 7.5e-10 67.0 79 57.0
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 1.7e-09 65.9 79 50.6
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 1.7e-09 65.9 79 50.6
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 1.7e-09 65.9 65 56.9
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 2.2e-09 65.5 68 52.9
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 3.7e-09 64.7 74 52.7
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 4.8e-09 64.3 51 58.8
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 4.8e-09 64.3 51 58.8
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 4.8e-09 64.3 73 49.3
Phvul.002G313700 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 8.2e-09 63.5 41 70.7
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 8.2e-09 63.5 68 51.5
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 1.1e-08 63.2 71 50.7
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 1.1e-08 63.2 81 48.1
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 1.1e-08 63.2 60 53.3
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 1.1e-08 63.2 60 53.3
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 1.4e-08 62.8 67 50.7
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 1.8e-08 62.4 83 49.4
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 3.1e-08 61.6 38 73.7
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 3.1e-08 61.6 73 53.4
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 4.1e-08 61.2 68 50.0
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 4.1e-08 61.2 79 49.4
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 7.0e-08 60.5 86 44.2
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 7.0e-08 60.5 67 49.3
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 1.2e-07 59.7 52 59.6
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 1.2e-07 59.7 66 48.5
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 1.6e-07 59.3 69 50.7
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 1.6e-07 59.3 69 50.7
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 2.0e-07 58.9 78 43.6
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 3.5e-07 58.2 59 54.2
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 7.7e-07 57.0 78 51.3
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 1.3e-06 56.2 64 51.6
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 1.3e-06 56.2 67 49.3
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 2.2e-06 55.5 69 47.8
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 2.9e-06 55.1 78 48.7
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 2.9e-06 55.1 48 58.3
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.8e-06 54.7 69 49.3
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.8e-06 54.7 68 51.5
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 3.8e-06 54.7 68 51.5
TAR636G2707 Trochodendron aralioides HOM05D003111 ORTHO05D003502 3.8e-06 54.7 49 63.3
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 5.0e-06 54.3 86 45.3
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 6.5e-06 53.9 52 63.5
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 6.5e-06 53.9 27 77.8
Ah.09g227900 Amaranthus hybridus HOM05D008067 ORTHO05D010226 8.5e-06 53.5 53 58.5
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 8.5e-06 53.5 45 62.2
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 8.5e-06 53.5 68 50.0


User provided reference genes

Program Settings