Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 3.1e-187 658.3 331 100.0
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.4e-142 510.0 331 77.3
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 1.5e-141 506.5 332 77.4
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 4.9e-140 501.5 332 77.1
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 4.9e-140 501.5 331 77.0
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 4.0e-134 481.9 326 74.2
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 1.5e-133 479.9 323 75.5
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 2.4e-131 472.6 330 73.9
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 1.2e-125 453.8 330 71.8
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.9e-124 449.1 314 73.9
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 2.5e-104 382.9 310 62.9
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 5.7e-104 381.7 310 62.9
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 5.7e-104 381.7 297 64.0
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 9.6e-104 380.9 309 62.5
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 8.2e-103 377.9 303 64.0
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 1.8e-102 376.7 316 61.7
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 5.3e-102 375.2 320 61.2
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 1.2e-101 374.0 296 62.8
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 3.4e-101 372.5 319 60.2
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 2.9e-100 369.4 309 59.2
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 4.2e-99 365.5 310 59.4
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 9.3e-99 364.4 303 60.7
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 3.5e-98 362.5 316 61.1
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 4.6e-98 362.1 312 58.7
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 6.1e-98 361.7 310 57.7
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 3.0e-97 359.4 307 59.0
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 2.8e-95 352.8 310 58.1
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 1.8e-94 350.1 304 58.9
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 1.5e-93 347.1 291 58.8
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.6e-93 346.3 316 58.9
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.5e-93 345.5 308 60.1
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 9.4e-91 337.8 308 59.1
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 9.4e-91 337.8 308 59.1
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.0e-89 332.8 302 59.3
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 1.5e-88 330.5 307 54.7
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 8.2e-87 324.7 313 56.9
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 2.2e-84 316.6 287 59.2
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 2.9e-84 316.2 283 56.9
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 1.6e-82 310.5 278 54.7
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 2.1e-82 310.1 282 53.5
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 2.7e-82 309.7 299 55.2
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 7.9e-82 308.1 298 54.7
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 1.8e-81 307.0 291 57.0
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 2.3e-81 306.6 287 55.7
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 3.9e-81 305.8 293 53.9
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 5.1e-81 305.4 298 54.4
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 6.7e-81 305.1 298 54.4
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 8.8e-81 304.7 297 54.5
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 2.0e-80 303.5 292 54.1
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 2.4e-78 296.6 303 53.1
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 5.9e-77 292.0 302 51.0
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.9e-77 292.0 254 61.0
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.5e-76 288.5 261 58.2
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 6.5e-76 288.5 289 54.3
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 4.2e-75 285.8 292 53.4
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 8.0e-74 281.6 225 62.2
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.8e-73 280.4 278 52.5
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 5.2e-73 278.9 295 51.5
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.0e-72 276.9 289 49.1
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 4.4e-72 275.8 289 49.1
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 1.7e-71 273.9 292 50.3
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 2.8e-71 273.1 243 59.3
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 1.4e-70 270.8 278 50.4
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 2.4e-70 270.0 298 50.3
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 7.7e-69 265.0 217 64.5
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 3.8e-68 262.7 343 44.6
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 5.7e-64 248.8 329 45.3
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 1.3e-63 247.7 327 43.7
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 6.3e-63 245.4 306 43.8
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 2.4e-62 243.4 235 56.2
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 3.1e-62 243.0 222 58.1
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 7.0e-62 241.9 284 45.4
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 1.6e-61 240.7 281 45.2
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 4.5e-61 239.2 282 45.4
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 8.5e-60 235.0 187 63.1
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.5e-59 234.2 187 63.1
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 3.2e-59 233.0 187 62.6
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 4.7e-58 229.2 262 46.9
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 1.2e-53 214.5 197 59.4
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.0e-49 201.4 155 67.1
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 1.6e-34 151.0 149 52.3
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 3.8e-15 86.7 189 30.7
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 3.9e-12 76.6 112 41.1


User provided reference genes

Program Settings