Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 7.1e-101 370.5 180 100.0
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.4e-96 356.3 180 95.0
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 2.0e-95 352.4 180 93.9
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.6e-95 352.1 180 93.9
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 8.4e-94 347.1 180 91.1
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 4.2e-93 344.7 180 91.1
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 1.8e-91 339.3 180 89.4
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 5.1e-91 337.8 180 85.6
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 86.1
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 85.0
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 1.6e-89 332.8 180 85.0
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 85.0
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 85.0
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 6.2e-89 330.9 179 83.8
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 85.6
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 85.0
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 83.3
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 82.8
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 85.0
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 81.7
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 3.4e-87 325.1 180 83.3
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 83.3
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 82.2
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 83.3
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 84.4
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 83.3
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 7.6e-87 323.9 180 82.8
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 82.8
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 82.8
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 81.7
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 82.8
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 83.3
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 80.6
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 82.2
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 82.8
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 81.7
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 82.2
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 81.7
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 81.1
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 80.6
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 81.1
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 81.1
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 81.1
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 80.6
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 80.6
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.1
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.1
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 80.0
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 77.2
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 81.1
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.7e-84 315.5 180 80.6
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.7e-84 315.5 180 80.6
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.7e-84 315.5 180 80.6
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.7e-84 315.5 180 80.6
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 2.7e-84 315.5 181 81.8
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 78.3
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 79.4
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 80.6
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 4.6e-84 314.7 180 80.6
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 4.6e-84 314.7 180 80.0
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 4.6e-84 314.7 180 80.0
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 4.6e-84 314.7 181 80.7
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 4.6e-84 314.7 180 80.0
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 5.1e-83 311.2 199 74.9
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 1.9e-82 309.3 180 78.3
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 3.3e-82 308.5 180 78.3
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.3e-81 306.6 160 90.6
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.6e-81 306.2 180 78.9
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 2.8e-81 305.4 180 75.6
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 3.7e-81 305.1 181 78.5
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 6.9e-80 300.8 165 82.4
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 2.0e-79 299.3 180 74.4
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 1.3e-78 296.6 206 69.9
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 1.7e-78 296.2 187 72.7
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 6.5e-78 294.3 203 70.0
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.8e-75 286.2 174 76.4
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 1.1e-74 283.5 160 81.9
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.5e-74 283.1 175 74.9
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.5e-74 283.1 177 71.8
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 1.5e-74 283.1 180 73.3
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 3.3e-74 282.0 159 79.9
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 4.3e-74 281.6 159 81.8
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 9.6e-74 280.4 161 78.9
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 2.8e-73 278.9 180 72.8
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 4.1e-72 275.0 160 78.8
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 4.1e-72 275.0 139 92.8
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 3.4e-71 271.9 180 70.6
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 3.8e-70 268.5 177 66.1
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 5.0e-70 268.1 172 75.6
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 6.5e-70 267.7 156 76.3
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 1.4e-69 266.5 164 75.0
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 4.2e-69 265.0 167 74.3
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 9.3e-69 263.8 162 72.8
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.8e-67 259.6 153 77.8
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 6.7e-67 257.7 175 66.3
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 5.7e-66 254.6 218 61.5
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 3.7e-65 251.9 175 65.1
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 8.2e-65 250.8 139 79.9
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 1.4e-59 233.4 171 61.4
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 5.1e-59 231.5 181 63.5
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 9.7e-58 227.3 114 90.4
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.0e-54 217.2 117 82.9
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 7.9e-52 207.6 185 61.6
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 7.9e-52 207.6 185 61.6
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 6.7e-51 204.5 147 64.6
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.3e-49 200.3 174 50.6
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 6.5e-46 188.0 146 59.6
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 8.8e-43 177.6 91 93.4
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 1.2e-39 167.2 93 78.5
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 3.8e-38 162.2 111 70.3
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.1e-37 160.6 113 69.0
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 1.5e-37 160.2 174 44.8
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 1.9e-37 159.8 126 65.9
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 4.7e-36 155.2 174 43.7
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.8e-32 143.3 177 44.1
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 2.8e-28 129.4 79 73.4
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.8e-24 116.7 99 60.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.0e-23 113.2 71 67.6
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.5e-21 107.1 65 72.3
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 5.6e-21 105.1 100 58.0
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 2.9e-17 92.8 56 78.6
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 8.3e-17 91.3 56 82.1
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.4e-16 90.5 50 82.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 4.6e-15 85.5 46 82.6
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.6e-07 60.5 57 54.4
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.7e-07 59.7 38 73.7


User provided reference genes

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