Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 7.1e-243 843.6 446 100.0
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.3e-191 673.3 448 79.9
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 8.2e-191 670.6 453 79.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.1e-190 670.2 448 81.5
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 2.0e-176 622.9 446 76.7
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.0e-173 612.8 446 70.9
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 7.7e-173 610.9 443 71.6
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.0e-172 610.5 448 71.9
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.0e-172 610.5 503 65.8
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.1e-171 607.1 446 72.6
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 4.2e-171 605.1 450 71.8
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 4.2e-171 605.1 447 71.8
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 3.0e-169 599.0 424 75.0
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 4.0e-169 598.6 443 71.1
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.2e-168 597.0 446 71.3
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.6e-168 595.9 443 70.2
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.4e-168 595.1 446 70.0
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.4e-168 595.1 443 70.7
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.1e-166 589.0 446 70.0
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 7.0e-166 587.8 459 68.8
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 7.0e-166 587.8 421 73.2
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 8.6e-164 580.9 450 68.9
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 8.6e-164 580.9 451 68.7
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 9.5e-163 577.4 400 75.5
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.2e-162 577.0 451 70.1
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 4.7e-162 575.1 409 72.4
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.0e-160 569.7 429 70.2
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 3.4e-160 568.9 464 65.5
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 7.5e-160 567.8 450 67.6
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 8.3e-159 564.3 443 67.3
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.4e-158 562.8 437 68.2
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 3.1e-158 562.4 370 81.9
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-157 560.5 447 66.0
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.7e-156 556.6 446 65.9
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.3e-156 556.2 464 65.9
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 5.0e-156 555.1 449 67.7
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 8.6e-156 554.3 445 66.5
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 7.3e-155 551.2 430 68.6
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.1e-154 549.7 453 65.3
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 8.0e-154 547.7 427 67.9
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 1.0e-153 547.4 397 72.5
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 1.4e-153 547.0 449 65.9
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.8e-153 546.6 466 63.1
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 5.2e-153 545.0 425 67.1
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 6.8e-153 544.7 435 67.8
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 6.8e-153 544.7 437 66.4
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.0e-152 543.1 439 66.5
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.0e-152 543.1 437 66.1
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.6e-152 542.7 446 65.5
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 9.8e-152 540.8 448 64.7
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 2.2e-151 539.7 458 62.0
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.9e-151 539.3 425 66.8
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 4.9e-151 538.5 415 68.7
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.1e-150 537.3 448 64.1
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.4e-150 537.0 456 64.3
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.4e-150 536.2 399 70.2
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.4e-150 536.2 449 62.1
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 3.2e-150 535.8 444 64.6
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.2e-149 533.9 444 64.0
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 3.0e-148 529.3 436 65.1
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.9e-147 526.6 448 61.6
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 2.1e-146 523.1 474 61.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 3.1e-145 519.2 332 78.3
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 5.2e-145 518.5 405 67.2
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 2.6e-144 516.2 450 62.0
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.1e-142 510.8 416 63.5
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.1e-142 510.8 456 62.5
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.6e-141 506.9 452 59.1
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 3.5e-141 505.8 447 61.7
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 6.0e-141 505.0 375 69.6
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 2.3e-140 503.1 424 63.4
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.3e-140 503.1 466 59.4
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.9e-140 502.3 461 59.4
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 5.1e-140 501.9 478 56.9
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 6.6e-140 501.5 419 61.8
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 6.6e-140 501.5 387 67.7
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 8.6e-140 501.1 453 60.7
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 1.5e-139 500.4 420 64.8
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.3e-139 499.2 473 59.2
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 5.6e-139 498.4 453 58.9
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 5.6e-139 498.4 451 59.4
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 1.2e-138 497.3 473 60.9
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.6e-138 496.9 456 59.0
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 2.1e-138 496.5 450 59.8
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 2.8e-138 496.1 493 59.2
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.6e-138 495.7 445 62.2
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.4e-137 493.8 423 61.7
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.1e-137 492.7 434 61.1
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.0e-136 490.0 442 61.1
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.4e-136 489.2 447 58.2
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 4.4e-136 488.8 357 70.6
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.8e-136 488.4 440 60.7
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.2e-135 486.5 454 58.4
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 2.2e-135 486.5 454 58.1
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.9e-135 486.1 464 58.6
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 4.9e-135 485.3 338 71.9
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.1e-134 484.2 434 59.2
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 1.4e-134 483.8 404 63.1
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-133 480.3 425 60.7
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 1.6e-133 480.3 387 65.9
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 3.9e-132 475.7 422 62.1
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 9.5e-131 471.1 486 57.2
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 1.6e-130 470.3 432 59.0
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.8e-130 469.5 424 60.6
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-129 467.2 426 58.9
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.4e-129 467.2 426 58.9
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 6.8e-129 464.9 444 57.0
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.7e-127 460.3 423 57.7
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.1e-126 457.6 378 65.3
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 8.1e-122 441.4 398 61.1
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 9.0e-121 438.0 413 57.6
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.2e-120 437.6 472 54.7
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 2.9e-119 433.0 449 55.0
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.1e-118 431.0 413 56.9
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.9e-118 430.3 449 54.8
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.5e-117 426.0 460 51.1
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 7.8e-117 424.9 454 54.6
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 7.8e-117 424.9 321 68.2
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.7e-116 423.7 386 57.8
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.3e-115 419.5 460 51.5
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.6e-114 417.2 514 49.8
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.2e-112 411.0 264 78.0
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.2e-112 411.0 444 54.7
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.5e-112 410.6 407 55.3
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.6e-112 409.8 425 53.6
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.3e-111 407.5 398 56.5
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 4.9e-111 405.6 296 72.0
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 2.3e-108 396.7 404 54.7
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 5.1e-108 395.6 287 72.5
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 4.3e-107 392.5 358 58.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 5.6e-107 392.1 316 64.6
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 6.2e-106 388.7 421 52.0
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 4.0e-105 386.0 329 59.3
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 5.5e-102 375.6 449 47.9
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 4.2e-94 349.4 347 55.3
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.0e-92 344.7 404 50.2
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-91 341.3 403 50.4
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 2.8e-90 336.7 404 49.5
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 2.4e-89 333.6 369 49.3
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 3.1e-89 333.2 419 47.5
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 4.1e-89 332.8 340 51.5
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 8.5e-87 325.1 412 47.1
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 4.6e-85 319.3 269 64.3
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.0e-83 313.9 365 49.9
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.5e-83 313.5 365 49.9
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-82 310.1 429 46.6
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 3.8e-79 299.7 354 49.4
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 2.5e-78 297.0 208 73.1
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 2.7e-77 293.5 349 49.3
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 5.1e-76 289.3 376 47.1
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 2.1e-61 240.7 450 39.3
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.4e-60 238.0 449 39.0
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.8e-58 229.6 327 41.6
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.8e-51 205.3 153 67.3
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 3.1e-49 200.3 200 54.5
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.9e-48 196.1 127 74.8
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.6e-40 171.4 144 66.0
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 8.9e-36 155.6 94 77.7
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-35 155.2 166 53.0
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 6.2e-29 132.9 119 58.8
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 8.9e-28 129.0 146 47.9
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 2.2e-26 124.4 147 51.7
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.4e-25 121.7 133 51.9
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 3.5e-24 117.1 98 57.1
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.0e-23 115.5 84 69.0
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 3.3e-22 110.5 94 57.4
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 5.6e-22 109.8 208 35.1
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.6e-21 108.2 101 55.4
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 4.7e-21 106.7 94 57.4
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.1e-17 95.5 66 74.2
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 1.9e-17 94.7 278 30.2
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 6.6e-15 86.3 149 42.3
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 2.5e-14 84.3 73 63.0
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.2e-13 82.0 157 38.2
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 3.1e-12 77.4 205 30.2
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 4.4e-11 73.6 102 46.1
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 9.9e-11 72.4 54 55.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 9.9e-11 72.4 54 55.6
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 2.9e-10 70.9 114 39.5
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 8.4e-10 69.3 197 34.0
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 8.4e-10 69.3 49 63.3
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 7.1e-09 66.2 57 63.2
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 4.3e-06 57.0 76 47.4


User provided reference genes

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