Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 5.7e-147 524.2 269 100.0
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 7.8e-128 460.7 238 99.2
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 3.1e-116 422.2 238 89.5
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 6.8e-116 421.0 238 88.7
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 8.9e-116 420.6 238 89.1
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.3e-114 416.8 234 89.3
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.3e-114 416.8 234 89.3
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 3.8e-114 415.2 238 88.7
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 3.0e-111 405.6 249 83.9
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 8.6e-111 404.1 236 87.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 7.6e-107 391.0 238 83.6
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.2e-106 389.4 238 82.8
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.4e-105 386.7 238 81.9
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 5.4e-105 384.8 232 81.5
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 7.1e-105 384.4 247 79.4
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.3e-103 380.2 233 81.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 3.9e-103 378.6 232 82.3
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 6.6e-103 377.9 237 80.2
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 8.7e-103 377.5 232 80.6
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.5e-102 375.9 232 80.6
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 3.3e-102 375.6 240 80.4
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 4.3e-102 375.2 232 79.7
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.3e-101 373.6 232 81.0
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 3.6e-101 372.1 232 78.4
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.2e-101 371.3 231 80.1
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.2e-101 371.3 232 79.7
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 8.1e-101 370.9 231 78.8
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 8.1e-101 370.9 237 76.8
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.1e-100 370.5 234 78.2
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.4e-100 370.2 234 78.2
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-100 370.2 232 79.7
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.8e-100 369.8 240 76.7
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 2.4e-100 369.4 232 79.7
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 2.4e-100 369.4 233 79.8
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 3.1e-100 369.0 231 80.1
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 3.1e-100 369.0 231 80.1
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 4.0e-100 368.6 231 79.7
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 4.0e-100 368.6 234 77.4
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.9e-100 367.9 229 79.9
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 6.9e-100 367.9 234 77.4
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.5e-99 366.7 229 78.2
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.5e-99 366.7 230 79.6
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.4e-99 365.5 231 79.2
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.8e-99 364.8 229 77.3
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.9e-98 362.5 229 79.0
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 6.4e-98 361.3 229 79.5
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.4e-98 360.9 234 76.1
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 8.4e-98 360.9 234 76.1
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.1e-97 360.5 233 75.1
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.4e-97 360.1 229 77.3
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.4e-97 360.1 229 76.4
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.4e-97 360.1 232 76.3
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.4e-97 360.1 229 78.2
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.4e-97 360.1 248 73.8
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.9e-97 359.8 229 78.2
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.4e-97 359.4 229 76.0
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.4e-97 359.4 229 77.3
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.4e-97 359.4 229 77.3
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.4e-97 359.4 229 76.9
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.4e-97 359.4 230 77.0
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.2e-97 359.0 234 76.1
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 7.1e-97 357.8 229 77.3
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 7.1e-97 357.8 231 76.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 9.3e-97 357.5 230 77.0
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 9.3e-97 357.5 232 77.2
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.2e-96 357.1 229 76.9
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.2e-96 357.1 229 76.4
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.6e-96 356.7 229 76.9
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.6e-96 356.7 231 76.6
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.6e-96 356.7 232 74.6
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.1e-96 356.3 229 78.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.1e-96 356.3 250 74.0
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 4.6e-96 355.1 229 76.0
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 6.0e-96 354.8 230 75.7
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.3e-95 353.6 279 67.7
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.8e-95 353.2 232 74.6
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.8e-95 353.2 253 71.1
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 2.3e-95 352.8 229 76.4
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.0e-95 352.4 230 75.7
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 3.0e-95 352.4 229 76.0
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.0e-95 352.4 230 75.7
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.0e-95 352.4 230 75.7
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 3.0e-95 352.4 232 73.7
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 3.0e-95 352.4 259 69.9
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 6.7e-95 351.3 234 76.1
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 6.7e-95 351.3 229 74.7
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.7e-95 350.9 229 75.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 8.7e-95 350.9 206 87.4
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.1e-94 350.5 232 74.1
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.5e-94 350.1 224 78.6
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 2.5e-94 349.4 232 76.3
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-92 343.2 234 74.4
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.8e-92 343.2 234 74.4
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.8e-92 343.2 213 78.9
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 9.0e-92 340.9 229 74.2
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.2e-91 340.5 229 73.4
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.6e-91 339.3 229 74.7
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 5.8e-91 338.2 230 72.2
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.3e-90 337.0 229 72.9
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.9e-90 335.9 231 72.3
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.4e-89 333.6 232 71.1
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 3.2e-89 332.4 236 69.1
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 4.2e-89 332.0 233 71.2
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 9.3e-89 330.9 244 70.5
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.5e-88 328.9 231 72.3
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 4.6e-88 328.6 234 73.1
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.0e-88 328.2 234 71.8
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.3e-87 327.0 202 79.7
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 6.7e-87 324.7 221 70.6
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 4.0e-84 315.5 231 69.3
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 4.0e-84 315.5 241 68.0
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 4.5e-83 312.0 229 68.6
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 7.6e-83 311.2 235 66.8
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.3e-82 310.5 195 80.0
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.3e-82 310.5 202 74.8
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.2e-82 309.7 200 76.5
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 2.9e-82 309.3 229 70.3
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.9e-82 308.5 213 70.9
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.2e-80 303.9 199 76.9
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 2.7e-80 302.8 199 75.4
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-77 293.5 231 67.5
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.1e-77 293.1 204 71.6
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.1e-77 293.1 230 65.2
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.2e-74 283.1 234 63.2
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 2.9e-74 282.7 239 62.8
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 3.8e-74 282.3 200 70.0
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 1.8e-71 273.5 166 79.5
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.3e-71 273.1 167 80.2
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.7e-71 271.2 178 75.3
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.1e-68 264.2 229 61.1
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.1e-68 264.2 190 73.2
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.4e-68 263.1 229 59.0
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 9.4e-65 251.1 238 56.7
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 5.1e-63 245.4 230 55.7
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.8e-60 236.9 138 81.2
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 2.0e-59 233.4 149 77.9
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.1e-56 223.4 234 52.1
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 4.5e-51 205.7 146 70.5
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.1e-48 196.8 112 81.2
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.2e-45 186.8 131 70.2
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.8e-45 186.4 148 64.2
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.1e-44 183.0 147 65.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-41 174.5 136 66.9
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.0e-38 163.7 158 58.9
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.0e-35 153.7 122 64.8
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.1e-32 142.1 118 66.9
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.0e-31 139.4 117 65.0
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.0e-31 139.4 117 65.0
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.1e-28 131.3 157 49.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.0e-27 127.1 74 81.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 7.8e-27 125.2 74 79.7
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.3e-26 124.4 74 79.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.7e-26 124.0 85 69.4
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.0e-26 122.5 74 77.0
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.6e-24 117.5 90 65.6
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.5e-22 110.9 194 35.1
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 9.8e-22 108.2 72 76.4
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.3e-21 107.8 67 82.1
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-18 98.2 66 78.8
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 6.6e-18 95.5 69 72.5
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 9.5e-17 91.7 69 68.1
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.2e-16 91.3 71 67.6
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 1.9e-12 77.4 46 84.8
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.2e-11 74.7 44 77.3
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 7.8e-11 72.0 69 55.1
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.3e-10 71.2 44 70.5
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 2.5e-09 67.0 70 52.9
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.7e-08 62.8 233 25.3
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 6.8e-07 58.9 33 87.9
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 3.4e-06 56.6 33 72.7
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 3.4e-06 56.6 33 72.7


User provided reference genes

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