Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 2.6e-110 402.1 210 100.0
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 4.7e-80 301.6 207 80.2
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.6e-72 276.6 206 71.8
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.4e-68 263.5 202 69.3
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.2e-67 260.4 206 68.9
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 2.1e-67 259.6 209 67.9
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 2.7e-67 259.2 207 66.2
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 2.7e-67 259.2 207 69.6
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 1.7e-66 256.5 209 67.9
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 2.1e-64 249.6 209 65.6
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 2.7e-59 232.6 209 61.7
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 1.3e-58 230.3 209 61.7
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 6.4e-53 211.5 180 66.7
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 1.4e-44 183.7 202 51.5
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 1.2e-43 180.6 202 51.0
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 1.2e-43 180.6 210 49.5
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.8e-40 168.7 188 50.5
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 1.1e-39 167.5 188 50.5
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.4e-39 167.2 205 49.3
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 1.4e-39 167.2 201 48.3
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.4e-39 166.4 188 50.5
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 5.3e-39 165.2 188 49.5
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 5.3e-39 165.2 204 48.5
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 9.0e-39 164.5 188 48.9
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 4.5e-38 162.2 194 49.0
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 4.5e-38 162.2 184 52.7
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 1.7e-37 160.2 181 50.8
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 8.4e-37 157.9 204 44.1
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.1e-36 157.5 202 44.1
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.4e-36 157.1 185 51.4
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 2.5e-36 156.4 195 48.2
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 5.5e-36 155.2 188 47.9
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 7.1e-36 154.8 181 51.9
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.2e-35 154.1 201 45.8
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 1.2e-35 154.1 204 43.6
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 2.1e-35 153.3 193 45.1
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.0e-34 151.0 195 46.7
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.3e-34 150.6 199 46.2
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 1.8e-34 150.2 192 47.4
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.9e-34 149.1 208 45.7
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 4.3e-33 145.6 202 47.0
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 8.2e-32 141.4 191 44.0
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 1.1e-31 141.0 186 45.7
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 4.1e-31 139.0 197 43.7
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 6.9e-31 138.3 182 46.7
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 9.0e-31 137.9 195 43.6
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 6.5e-29 131.7 202 41.6
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 1.9e-28 130.2 192 45.8
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 2.1e-27 126.7 196 43.4
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 2.7e-27 126.3 206 36.9
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 7.9e-27 124.8 196 39.8
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 5.1e-26 122.1 174 43.1
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 5.1e-26 122.1 197 43.7
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 8.7e-26 121.3 186 42.5
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 1.1e-25 120.9 192 40.1
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.9e-25 120.2 174 42.5
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 3.3e-25 119.4 174 42.5
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 7.4e-25 118.2 152 50.0
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.4e-23 114.0 174 45.4
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 1.8e-23 113.6 175 41.1
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 2.4e-23 113.2 206 36.9
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 3.1e-23 112.8 193 40.4
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 3.1e-23 112.8 177 39.5
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.0e-22 110.2 181 42.0
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.0e-22 110.2 181 42.0
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 2.6e-22 109.8 199 36.2
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 3.4e-22 109.4 203 35.5
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 5.9e-22 108.6 182 38.5
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.3e-21 107.5 199 36.2
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 3.8e-21 105.9 121 52.9
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 8.5e-21 104.8 116 50.9
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 3.2e-20 102.8 102 58.8
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 4.2e-20 102.4 203 34.5
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 9.4e-20 101.3 199 37.7
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 1.2e-19 100.9 185 37.8
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.6e-19 100.5 166 40.4
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 2.7e-19 99.8 198 38.9
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 2.7e-19 99.8 148 41.9
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 2.7e-19 99.8 196 36.2
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 8.8e-18 94.7 84 58.3
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 1.5e-17 94.0 155 38.7
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 3.3e-17 92.8 151 42.4
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 3.7e-16 89.4 110 48.2
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 4.8e-16 89.0 169 36.7
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 1.8e-15 87.0 132 45.5
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 6.9e-15 85.1 97 52.6
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 1.5e-14 84.0 61 67.2
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 2.0e-14 83.6 90 48.9
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 7.2e-12 75.1 95 44.2
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 1.4e-10 70.9 81 45.7
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 2.8e-08 63.2 100 40.0


User provided reference genes

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