Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 1.1e-220 769.6 373 100.0
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 5.0e-165 584.7 360 78.1
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 2.3e-162 575.9 377 75.1
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 6.7e-162 574.3 361 76.2
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 1.5e-161 573.2 367 76.6
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 4.5e-158 561.6 373 72.9
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 1.7e-157 559.7 365 72.9
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 9.4e-156 553.9 358 73.5
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 3.5e-142 508.8 355 68.2
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 5.7e-137 491.5 384 63.8
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.2e-136 489.6 391 62.7
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 2.3e-125 453.0 361 61.2
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 3.6e-123 445.7 378 58.2
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 8.9e-122 441.0 360 60.3
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 2.3e-117 426.4 363 57.0
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.9e-116 423.3 359 57.4
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 2.5e-116 422.9 356 56.2
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 3.6e-115 419.1 344 57.8
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 6.1e-115 418.3 360 57.2
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 6.1e-115 418.3 371 54.7
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 1.4e-114 417.2 355 56.6
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 2.6e-113 412.9 364 56.9
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 9.8e-113 411.0 387 53.7
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 2.4e-111 406.4 331 58.6
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 5.4e-111 405.2 358 56.7
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 7.0e-111 404.8 370 54.3
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 5.0e-109 398.7 344 56.1
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 6.6e-109 398.3 344 56.1
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 8.6e-109 397.9 335 58.2
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.6e-107 393.7 380 55.3
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 2.1e-107 393.3 358 54.7
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 2.8e-107 392.9 371 53.4
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 3.6e-107 392.5 342 54.1
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 1.1e-106 391.0 341 54.8
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 2.3e-106 389.8 341 54.5
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 3.1e-106 389.4 339 55.5
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 4.0e-106 389.0 341 54.8
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 2.0e-105 386.7 341 54.3
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 7.5e-105 384.8 359 52.1
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 2.2e-104 383.3 338 54.1
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 3.7e-104 382.5 332 54.8
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 3.7e-104 382.5 371 55.0
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 8.3e-104 381.3 329 55.0
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.1e-103 380.9 360 51.4
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 1.1e-103 380.9 332 55.4
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 1.1e-103 380.9 332 54.5
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 1.2e-102 377.5 343 54.8
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.7e-102 376.3 338 53.0
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 7.8e-102 374.8 362 51.4
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 1.7e-101 373.6 355 50.7
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 1.7e-101 373.6 367 50.4
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 6.6e-101 371.7 362 51.1
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 8.6e-101 371.3 366 50.5
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 2.5e-100 369.8 363 52.3
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 4.3e-100 369.0 340 53.2
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 5.6e-100 368.6 368 49.2
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 2.8e-99 366.3 345 52.5
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 6.2e-99 365.2 329 54.1
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.1e-98 364.4 310 57.1
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 1.4e-98 364.0 329 54.1
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 1.8e-98 363.6 377 49.9
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 4.0e-98 362.5 362 50.8
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 2.0e-97 360.1 361 49.3
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 2.0e-97 360.1 415 45.5
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.3e-96 357.5 341 52.8
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.7e-96 357.1 333 53.8
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 4.1e-95 352.4 349 50.4
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 4.1e-95 352.4 341 50.4
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 1.6e-94 350.5 333 52.0
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 8.6e-93 344.7 324 52.5
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 1.5e-92 344.0 358 47.5
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 1.5e-92 344.0 341 50.1
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 2.5e-92 343.2 357 50.1
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 1.4e-90 337.4 360 46.9
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 3.1e-90 336.3 198 83.3
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 3.4e-89 332.8 335 49.0
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 3.8e-88 329.3 323 50.2
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 3.8e-88 329.3 322 50.6
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 3.8e-88 329.3 369 49.3
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 8.4e-88 328.2 357 48.7
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 7.8e-86 321.6 363 46.8
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 3.9e-85 319.3 364 46.2
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 4.4e-81 305.8 342 47.7
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 2.2e-80 303.5 285 50.5
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 1.4e-79 300.8 344 48.0
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 7.8e-78 295.0 328 45.1
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 5.1e-77 292.4 240 59.6
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 2.8e-75 286.6 321 44.2
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 2.0e-73 280.4 468 35.0
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 9.3e-71 271.6 249 51.0
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 3.5e-70 269.6 349 39.8
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 2.1e-67 260.4 414 38.2
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 1.3e-64 251.1 292 44.2
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.3e-59 234.6 257 47.1
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 1.1e-55 221.5 342 36.0
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 1.4e-55 221.1 195 52.8
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 4.6e-54 216.1 315 38.1
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.9e-53 213.0 228 46.5
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 6.7e-53 212.2 209 47.8
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.9e-52 210.7 298 44.0
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 7.4e-52 208.8 180 56.7
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 9.7e-52 208.4 292 37.3
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 4.3e-44 183.0 229 44.1
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 3.7e-43 179.9 189 49.2
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.5e-39 167.2 327 34.3
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.6e-36 157.1 131 63.4
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 7.4e-36 155.6 125 57.6
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 1.9e-31 141.0 250 34.4
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 2.0e-28 131.0 129 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 4.1e-26 123.2 227 31.3
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 5.3e-26 122.9 119 52.9
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.5e-25 120.2 239 33.1
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 1.2e-20 105.1 253 30.0
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 1.1e-18 98.6 85 52.9
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 9.1e-18 95.5 83 49.4
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 2.2e-16 90.9 114 42.1
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 5.0e-16 89.7 117 42.7
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.5e-15 88.2 80 48.8
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.5e-15 86.3 69 52.2
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.5e-09 66.6 74 50.0
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.0e-08 65.5 74 48.6
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.3e-08 65.1 74 48.6
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.7e-08 64.7 74 48.6
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 3.6e-06 57.0 44 50.0


User provided reference genes

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