Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021070 Lotus japonicus HOM05D002915 ORTHO05D003004 4.9e-120 434.5 219 100.0
Lj4g0025234 Lotus japonicus HOM05D002915 ORTHO05D003004 4.2e-71 271.9 256 56.6
Lj4g0001673 Lotus japonicus HOM05D002915 ORTHO05D003004 9.3e-71 270.8 248 57.3
Lj1g0000366 Lotus japonicus HOM05D002915 ORTHO05D003004 7.9e-70 267.7 216 62.5
Lj4g0001937 Lotus japonicus HOM05D002915 ORTHO05D003004 1.8e-69 266.5 227 58.6
Lj4g0013622 Lotus japonicus HOM05D002915 ORTHO05D003004 2.3e-69 266.2 227 59.0
Glyma.17G083900 Glycine max HOM05D002915 ORTHO05D003004 2.5e-68 262.7 208 61.5
Lj4g0005635 Lotus japonicus HOM05D002915 ORTHO05D003004 2.5e-68 262.7 227 59.0
Lj6g0021938 Lotus japonicus HOM05D002915 ORTHO05D003004 4.3e-68 261.9 220 62.3
Lj6g0001752 Lotus japonicus HOM05D002915 ORTHO05D003004 1.4e-66 256.9 209 62.7
Lj2g0014982 Lotus japonicus HOM05D002915 ORTHO05D003004 1.2e-65 253.8 247 54.7
Lj4g0002182 Lotus japonicus HOM05D002915 ORTHO05D003004 3.4e-65 252.3 251 54.2
Lj1g0028201 Lotus japonicus HOM05D002915 ORTHO05D003004 1.0e-64 250.8 239 57.3
Lj3g0023229 Lotus japonicus HOM05D002915 ORTHO05D003004 1.7e-64 250.0 247 55.9
Lj1g0003622 Lotus japonicus HOM05D002915 ORTHO05D003004 6.5e-64 248.1 249 52.6
Psat0s1573g0120 Pisum sativum HOM05D002915 ORTHO05D003004 7.1e-63 244.6 248 51.2
Lj6g0013707 Lotus japonicus HOM05D002915 ORTHO05D003004 1.0e-61 240.7 221 56.6
Lj6g0019512 Lotus japonicus HOM05D002915 ORTHO05D003004 4.3e-60 235.3 221 56.1
Lj4g0014849 Lotus japonicus HOM05D002915 ORTHO05D003004 1.3e-59 233.8 244 54.5
Lj5g0020165 Lotus japonicus HOM05D002915 ORTHO05D003004 1.4e-58 230.3 249 52.6
TPR.G23884 Trifolium pratense HOM05D002915 ORTHO05D003004 1.4e-58 230.3 254 48.4
Lalb_Chr18g0050831 Lupinus albus HOM05D002915 ORTHO05D003004 2.4e-58 229.6 253 48.2
Lj5g0000576 Lotus japonicus HOM05D002915 ORTHO05D003004 9.0e-58 227.6 251 51.4
Lj3g0026757 Lotus japonicus HOM05D002915 ORTHO05D003004 1.2e-57 227.3 210 56.2
Lj5g0016376 Lotus japonicus HOM05D002915 ORTHO05D003004 1.7e-56 223.4 255 50.6
Psat0s3757g0040 Pisum sativum HOM05D002915 ORTHO05D003004 2.2e-56 223.0 287 42.5
Psat0s6185g0040 Pisum sativum HOM05D002915 ORTHO05D003004 1.1e-55 220.7 287 42.2
Lj2g0026934 Lotus japonicus HOM05D002915 ORTHO05D003004 4.2e-55 218.8 156 62.8
Lalb_Chr10g0105601 Lupinus albus HOM05D002915 ORTHO05D003004 2.7e-54 216.1 214 49.5
Lj3g0011377 Lotus japonicus HOM05D002915 ORTHO05D003004 1.3e-53 213.8 219 51.6
Medtr4g112590 Medicago truncatula HOM05D002915 ORTHO05D003004 1.4e-50 203.8 217 49.8
TPR.G19429 Trifolium pratense HOM05D002915 ORTHO05D003004 4.5e-41 172.2 241 39.4
arahy.Tifrunner.gnm1.ann1.JTPM3R Arachis hypogaea HOM05D000176 ORTHO05D000106 9.4e-39 164.5 216 43.1
Phvul.003G180400 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 7.9e-38 161.4 213 40.4
Phvul.L006943 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 6.3e-35 151.8 227 37.4
Phvul.003G180500 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 1.2e-33 147.5 253 34.8
arahy.Tifrunner.gnm1.ann1.J68HPB Arachis hypogaea HOM05D002915 ORTHO05D003004 6.3e-27 125.2 203 37.4
Lalb_Chr13g0303601 Lupinus albus HOM05D002915 ORTHO05D003004 2.0e-25 120.2 241 34.0
Atru.chr1.712 Acer truncatum HOM05D002915 ORTHO05D003004 2.5e-23 113.2 239 32.6
Atru.chr1.711 Acer truncatum HOM05D002915 ORTHO05D003004 4.2e-23 112.5 235 33.2
Haze_24934 Corylus avellana HOM05D002915 ORTHO05D003004 4.2e-23 112.5 260 33.5
CiPaw.06G099700 Carya illinoinensis HOM05D002915 ORTHO05D003004 5.5e-23 112.1 256 34.8
Glyma.07G247800 Glycine max HOM05D002915 ORTHO05D003004 3.6e-22 109.4 242 33.1
Atru.chr11.2244 Acer truncatum HOM05D002915 ORTHO05D003004 6.1e-22 108.6 241 32.4
Atru.chr11.2259 Acer truncatum HOM05D002915 ORTHO05D003004 6.1e-22 108.6 241 32.4
CSS0045033 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 2.3e-21 106.7 230 33.0
Medtr5g033770 Medicago truncatula HOM05D002915 ORTHO05D003004 4.4e-20 102.4 249 31.7
Atru.chr11.2288 Acer truncatum HOM05D002915 ORTHO05D003004 5.7e-20 102.1 238 33.2
Lj4g0008862 Lotus japonicus HOM05D002915 ORTHO05D003004 5.7e-20 102.1 256 32.0
CiPaw.05G115300 Carya illinoinensis HOM05D002915 ORTHO05D003004 7.5e-20 101.7 234 33.8
CiPaw.05G115500 Carya illinoinensis HOM05D002915 ORTHO05D003004 7.5e-20 101.7 234 34.2
CiPaw.05G115400 Carya illinoinensis HOM05D002915 ORTHO05D003004 9.8e-20 101.3 234 33.8
Sabra13G0007400 Salix brachista HOM05D002915 ORTHO05D003004 9.8e-20 101.3 239 28.5
TWI09G1418 Tripterygium wilfordii HOM05D002915 ORTHO05D003004 9.8e-20 101.3 239 30.5
Phvul.002G142400 Phaseolus vulgaris HOM05D002915 ORTHO05D003004 2.2e-19 100.1 192 32.3
Manes.12G014800 Manihot esculenta HOM05D002915 ORTHO05D003004 2.8e-19 99.8 235 31.5
Dinv14798 Davidia involucrata HOM05D002915 ORTHO05D003004 3.7e-19 99.4 241 32.0
Hma1.2p1_0167F.1_g073810 Hydrangea macrophylla HOM05D002915 ORTHO05D003004 3.7e-19 99.4 226 34.1
Rhsim02G0221300 Rhododendron simsii HOM05D002915 ORTHO05D003004 3.7e-19 99.4 236 32.2
Medtr4g119850 Medicago truncatula HOM05D002915 ORTHO05D003004 4.8e-19 99.0 258 31.0
Psat4g025920 Pisum sativum HOM05D002915 ORTHO05D003004 4.8e-19 99.0 247 31.6
TPR.G3196 Trifolium pratense HOM05D002915 ORTHO05D003004 4.8e-19 99.0 246 32.5
Cfa002665 Carpinus fangiana HOM05D002915 ORTHO05D003004 1.4e-18 97.4 258 31.4
vmacro16134 Vaccinium macrocarpon HOM05D002915 ORTHO05D003004 1.8e-18 97.1 232 31.5
Rhsim12G0105400 Rhododendron simsii HOM05D002915 ORTHO05D003004 2.4e-18 96.7 238 30.7
Rhsim13G0213700 Rhododendron simsii HOM05D002915 ORTHO05D003004 3.1e-18 96.3 237 30.8
TAR629G0058 Trochodendron aralioides HOM05D002915 ORTHO05D003004 3.1e-18 96.3 222 32.0
Actinidia25760 Actinidia chinensis HOM05D002915 ORTHO05D003004 5.4e-18 95.5 223 30.9
Ca_21504_v3 Cicer arietinum L. HOM05D002915 ORTHO05D003004 7.0e-18 95.1 241 32.4
Manes.12G023850 Manihot esculenta HOM05D002915 ORTHO05D003004 7.0e-18 95.1 232 31.5
Medtr3g075360 Medicago truncatula HOM05D002915 ORTHO05D003004 7.0e-18 95.1 230 31.7
Rhsim12G0105300 Rhododendron simsii HOM05D002915 ORTHO05D003004 7.0e-18 95.1 236 31.4
Glyma.07G247700 Glycine max HOM05D002915 ORTHO05D003004 9.1e-18 94.7 154 37.0
MD16G1169500 Malus domestica HOM05D002915 ORTHO05D003004 9.1e-18 94.7 244 30.3
MD16G1170100 Malus domestica HOM05D002915 ORTHO05D003004 1.2e-17 94.4 259 30.1
Manes.11G084185 Manihot esculenta HOM05D002915 ORTHO05D003004 1.2e-17 94.4 264 30.7
Prupe.1G137300 Prunus persica HOM05D002915 ORTHO05D003004 1.2e-17 94.4 251 31.1
Potri.013G008800 Populus trichocarpa HOM05D002915 ORTHO05D003004 1.6e-17 94.0 239 29.3
CARHR060200 Cardamine hirsuta HOM05D002915 ORTHO05D003004 2.7e-17 93.2 260 29.6
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 1.7e-16 90.5 230 29.1
MELO3C034049.2 Cucumis melo HOM05D002915 ORTHO05D003004 2.9e-16 89.7 229 29.7
AL2G26290 Arabidopsis lyrata HOM05D002915 ORTHO05D003004 5.0e-16 89.0 239 28.9
MELO3C029741.2 Cucumis melo HOM05D002915 ORTHO05D003004 6.5e-16 88.6 230 28.7
Manes.13G015600 Manihot esculenta HOM05D002915 ORTHO05D003004 1.1e-15 87.8 261 29.1
Thecc.09G039200 Theobroma cacao HOM05D002915 ORTHO05D003004 1.1e-15 87.8 229 30.6
MELO3C011803.2 Cucumis melo HOM05D002915 ORTHO05D003004 2.5e-15 86.7 247 27.9
Gohir.D09G108500 Gossypium hirsutum HOM05D002915 ORTHO05D003004 4.2e-15 85.9 236 28.4
THA.LOC104810144 Tarenaya hassleriana HOM05D002915 ORTHO05D003004 4.2e-15 85.9 259 27.8
Thhalv10019573m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 7.2e-15 85.1 266 27.8
Gohir.D11G043350 Gossypium hirsutum HOM05D002915 ORTHO05D003004 7.2e-15 85.1 219 29.7
ClCG11G013100 Citrullus lanatus HOM05D002915 ORTHO05D003004 9.5e-15 84.7 224 31.2
Gorai.006G126200 Gossypium raimondii HOM05D002915 ORTHO05D003004 9.5e-15 84.7 236 28.0
Gorai.007G046700 Gossypium raimondii HOM05D002915 ORTHO05D003004 9.5e-15 84.7 220 29.5
Lj6A815T43 Lonicera japonica HOM05D002915 ORTHO05D003004 9.5e-15 84.7 222 29.3
Thecc.06G218700 Theobroma cacao HOM05D002915 ORTHO05D003004 9.5e-15 84.7 227 28.6
Glyma.02G238900 Glycine max HOM05D002915 ORTHO05D003004 1.2e-14 84.3 152 33.6
Hund03449 Selenicereus undatus HOM05D002915 ORTHO05D003004 1.6e-14 84.0 162 28.4
Gohir.A09G111900 Gossypium hirsutum HOM05D002915 ORTHO05D003004 2.1e-14 83.6 236 28.4
Carub.0002s1396 Capsella rubella HOM05D002915 ORTHO05D003004 2.8e-14 83.2 246 28.0
CsaV3_1G004340 Cucumis sativus L. HOM05D002915 ORTHO05D003004 3.6e-14 82.8 259 29.0
CSS0048418 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 4.7e-14 82.4 119 37.8
QL03p054762 Quercus lobata HOM05D002915 ORTHO05D003004 4.7e-14 82.4 252 31.3
TPR.G30653 Trifolium pratense HOM05D002915 ORTHO05D003004 4.7e-14 82.4 75 49.3
FAN17G1773 Fragaria x ananassa HOM05D002915 ORTHO05D003004 6.1e-14 82.0 244 29.5
Gohir.D09G108400 Gossypium hirsutum HOM05D002915 ORTHO05D003004 6.1e-14 82.0 236 28.0
Gorai.006G126100 Gossypium raimondii HOM05D002915 ORTHO05D003004 6.1e-14 82.0 230 28.7
Aqoxy1G00479 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 8.0e-14 81.6 222 26.1
Glyma.17G026300 Glycine max HOM05D002915 ORTHO05D003004 8.0e-14 81.6 106 42.5
HanXRQChr05g0131161 Helianthus annuus HOM05D002915 ORTHO05D003004 8.0e-14 81.6 160 34.4
Duzib150G0710 Durio zibethinus HOM05D002915 ORTHO05D003004 1.0e-13 81.3 178 30.3
FAN19G1392 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.0e-13 81.3 243 28.8
RcHm_v2.0_Chr4g0422141 Rosa chinensis HOM05D002915 ORTHO05D003004 1.4e-13 80.9 246 27.2
Ciclev10033456m.g Citrus clementina HOM05D002915 ORTHO05D003004 1.8e-13 80.5 182 34.6
Cc05_g03590 Coffea canephora HOM05D002915 ORTHO05D003004 1.8e-13 80.5 229 29.3
Aqoxy1G01229 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 2.3e-13 80.1 218 25.7
TAR629G2135 Trochodendron aralioides HOM05D002915 ORTHO05D003004 2.3e-13 80.1 167 30.5
Sed0005801 Sechium edule HOM05D002915 ORTHO05D003004 3.0e-13 79.7 233 26.6
CANSAT64G2697 Cannabis sativa HOM05D002915 ORTHO05D003004 4.0e-13 79.3 170 28.2
CsaV3_5G029620 Cucumis sativus L. HOM05D002915 ORTHO05D003004 4.0e-13 79.3 239 25.5
FAN26G0404 Fragaria x ananassa HOM05D002915 ORTHO05D003004 5.2e-13 79.0 244 29.5
Ciclev10006753m.g Citrus clementina HOM05D002915 ORTHO05D003004 6.8e-13 78.6 102 35.3
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 8.8e-13 78.2 231 27.3
TPR.G19430 Trifolium pratense HOM05D002915 ORTHO05D003004 8.8e-13 78.2 131 38.2
Duzib168G1942 Durio zibethinus HOM05D002915 ORTHO05D003004 1.5e-12 77.4 226 29.2
Medtr4g123430 Medicago truncatula HOM05D002915 ORTHO05D003004 2.0e-12 77.0 168 35.7
Gohir.A11G040100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 2.6e-12 76.6 177 31.6
Lj6A821T72 Lonicera japonica HOM05D002915 ORTHO05D003004 2.6e-12 76.6 229 28.4
Thhalv10019642m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 4.4e-12 75.9 154 35.1
BcaC08g46172 Brassica carinata HOM05D002915 ORTHO05D003004 7.5e-12 75.1 179 30.2
C06p42620 Brassica napus HOM05D002915 ORTHO05D003004 7.5e-12 75.1 179 30.2
Carub.0002s2166 Capsella rubella HOM05D002915 ORTHO05D003004 9.8e-12 74.7 222 26.1
Duzib168G1329 Durio zibethinus HOM05D002915 ORTHO05D003004 9.8e-12 74.7 227 28.6
Oeu033490.1 Olea europaea HOM05D002915 ORTHO05D003004 9.8e-12 74.7 241 28.2
BolC6t39177H Brassica oleracea HOM05D002915 ORTHO05D003004 1.3e-11 74.3 179 30.2
Migut.C00066 Erythranthe guttata HOM05D002915 ORTHO05D003004 1.3e-11 74.3 247 25.9
PGSC0003DMG400037269 Solanum tuberosum HOM05D002915 ORTHO05D003004 1.7e-11 73.9 249 25.3
Migut.F00476 Erythranthe guttata HOM05D002915 ORTHO05D003004 2.2e-11 73.6 247 26.3
FAN12G2317 Fragaria x ananassa HOM05D002915 ORTHO05D003004 2.8e-11 73.2 245 29.0
Migut.H01084 Erythranthe guttata HOM05D002915 ORTHO05D003004 4.9e-11 72.4 245 25.3
Potri.001G321400 Populus trichocarpa HOM05D002915 ORTHO05D003004 4.9e-11 72.4 190 27.4
Gohir.D05G172300 Gossypium hirsutum HOM05D002915 ORTHO05D003004 6.3e-11 72.0 171 29.8
Gorai.009G177500 Gossypium raimondii HOM05D002915 ORTHO05D003004 6.3e-11 72.0 171 29.8
Migut.F00575 Erythranthe guttata HOM05D002915 ORTHO05D003004 1.1e-10 71.2 163 30.1
PGSC0003DMG400043877 Solanum tuberosum HOM05D002915 ORTHO05D003004 1.1e-10 71.2 222 27.5
Cc02_g04260 Coffea canephora HOM05D002915 ORTHO05D003004 1.4e-10 70.9 242 25.2
Gohir.A05G169100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 1.4e-10 70.9 171 29.8
CSS0049349 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 1.8e-10 70.5 132 32.6
CAN.G1143.27 Capsicum annuum HOM05D002915 ORTHO05D003004 1.8e-10 70.5 243 24.3
Eucgr.G01570 Eucalyptus grandis HOM05D002915 ORTHO05D003004 2.4e-10 70.1 157 29.3
Migut.H01190 Erythranthe guttata HOM05D002915 ORTHO05D003004 3.1e-10 69.7 214 27.1
Cc03_g08730 Coffea canephora HOM05D002915 ORTHO05D003004 4.1e-10 69.3 181 32.0
Sp5g30010 Schrenkiella parvula HOM05D002915 ORTHO05D003004 5.4e-10 68.9 259 24.7
CARHR046130 Cardamine hirsuta HOM05D002915 ORTHO05D003004 7.0e-10 68.6 163 27.0
Cc00_g21400 Coffea canephora HOM05D002915 ORTHO05D003004 7.0e-10 68.6 226 29.6
PGSC0003DMG400043813 Solanum tuberosum HOM05D002915 ORTHO05D003004 9.2e-10 68.2 160 27.5
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 1.6e-09 67.4 69 46.4
Aqoxy4G02244 Aquilegia oxysepala HOM05D002915 ORTHO05D003004 2.0e-09 67.0 217 26.3
A07p34150 Brassica napus HOM05D002915 ORTHO05D003004 2.7e-09 66.6 69 44.9
Lsat_1_v5_gn_8_150181 Lactuca sativa HOM05D000825 ORTHO05D003684 2.7e-09 66.6 158 34.8
COL.COLO4_36468 Corchorus olitorius HOM05D002915 ORTHO05D003004 3.5e-09 66.2 172 27.3
Migut.C00063 Erythranthe guttata HOM05D002915 ORTHO05D003004 3.5e-09 66.2 247 24.7
Duzib168G1902 Durio zibethinus HOM05D002915 ORTHO05D003004 4.5e-09 65.9 155 32.9
Sopen06g010910 Solanum pennellii HOM05D000025 ORTHO05D000136 4.5e-09 65.9 166 27.1
PGSC0003DMG400021580 Solanum tuberosum HOM05D002915 ORTHO05D003004 7.8e-09 65.1 203 27.1
AT1G74875 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 1.0e-08 64.7 168 26.8
EL10Ac7g18007 Beta vulgaris HOM05D000025 ORTHO05D003004 1.0e-08 64.7 164 26.8
DCAR_018111 Daucus carota HOM05D002915 ORTHO05D003004 1.3e-08 64.3 245 25.7
Eucgr.G01392 Eucalyptus grandis HOM05D002915 ORTHO05D003004 1.7e-08 63.9 105 33.3
FAN23G0131 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.7e-08 63.9 104 37.5
BcaB03g15181 Brassica carinata HOM05D002915 ORTHO05D003004 2.3e-08 63.5 62 48.4
Cpa.g.sc85.123 Carica papaya HOM05D002915 ORTHO05D003004 2.3e-08 63.5 109 35.8
SGA_v2.0_scaffold169G38697 Striga asiatica HOM05D002915 ORTHO05D003004 2.3e-08 63.5 226 28.8
Cc00_g09710 Coffea canephora HOM05D002915 ORTHO05D003004 2.9e-08 63.2 150 32.0
SGA_v2.0_scaffold51G18778 Striga asiatica HOM05D002915 ORTHO05D003004 5.0e-08 62.4 167 30.5
Eucgr.G01391 Eucalyptus grandis HOM05D002915 ORTHO05D003004 6.6e-08 62.0 138 31.2
FAN28G1700 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.1e-07 61.2 107 35.5
FAN28G2009 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.1e-07 61.2 107 35.5
FAN28G2017 Fragaria x ananassa HOM05D002915 ORTHO05D003004 1.1e-07 61.2 107 35.5
HanXRQChr08g0207481 Helianthus annuus HOM05D002915 ORTHO05D003004 1.9e-07 60.5 249 26.9
TPR.G13381 Trifolium pratense HOM05D002915 ORTHO05D003004 2.5e-07 60.1 54 51.9
CARHR104930 Cardamine hirsuta HOM05D002915 ORTHO05D003004 5.6e-07 58.9 134 33.6
Cc08_g03020 Coffea canephora HOM05D002915 ORTHO05D003004 5.6e-07 58.9 226 26.5
EL10Ac3g06698 Beta vulgaris HOM05D024357 ORTHO05D003004 7.3e-07 58.5 164 25.6
PGSC0003DMG400019090 Solanum tuberosum HOM05D002915 ORTHO05D003004 7.3e-07 58.5 131 31.3
AT1G67623 Arabidopsis thaliana HOM05D002915 ORTHO05D003004 9.5e-07 58.2 201 28.4
Haze_14809 Corylus avellana HOM05D002915 ORTHO05D003004 3.6e-06 56.2 140 32.9


User provided reference genes

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