Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.4e-159 566.2 294 100.0
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.6e-129 465.7 298 81.9
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 5.9e-129 464.5 289 83.0
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.3e-128 463.4 298 82.2
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 4.7e-126 454.9 297 80.8
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 8.8e-125 450.7 294 80.6
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 2.6e-124 449.1 296 80.7
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.8e-122 443.0 299 80.6
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.8e-122 443.0 286 81.1
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.0e-120 437.2 296 79.1
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.3e-120 436.8 306 79.1
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 8.0e-118 427.6 288 77.1
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 2.6e-116 422.5 288 76.0
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 4.8e-115 418.3 285 76.1
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 1.2e-113 413.7 289 74.4
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.0e-112 410.6 246 84.1
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 6.5e-112 407.9 286 73.8
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 8.5e-112 407.5 293 73.7
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.5e-111 406.8 275 77.8
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.9e-111 406.4 291 74.2
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 3.2e-111 405.6 283 75.3
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.7e-110 402.5 273 75.8
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 4.7e-110 401.7 287 73.9
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.8e-109 399.8 247 79.4
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.3e-109 399.4 291 72.9
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 3.0e-109 399.1 277 75.5
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 4.0e-109 398.7 254 79.1
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 4.0e-109 398.7 273 75.8
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 5.2e-109 398.3 293 72.0
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 6.8e-109 397.9 240 82.9
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.2e-108 397.1 299 71.2
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 5.7e-108 394.8 275 74.9
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 7.5e-108 394.4 277 74.0
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 7.5e-108 394.4 301 69.8
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 9.8e-108 394.0 250 79.6
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.7e-107 393.3 277 74.0
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.7e-107 393.3 298 72.1
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.7e-107 392.1 263 77.2
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.7e-107 392.1 286 71.0
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 4.9e-107 391.7 305 68.9
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.1e-106 390.6 301 72.1
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.4e-106 390.2 299 71.6
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 3.1e-106 389.0 280 73.6
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 4.1e-106 388.7 282 72.3
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.2e-105 387.1 284 69.4
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.2e-105 387.1 284 72.2
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 2.0e-105 386.3 280 73.6
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 2.7e-105 386.0 292 70.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.7e-105 386.0 268 73.5
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 3.5e-105 385.6 290 70.7
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 4.5e-105 385.2 284 71.5
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 5.9e-105 384.8 275 74.2
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 5.9e-105 384.8 289 70.6
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 5.9e-105 384.8 282 70.6
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.0e-104 384.0 296 68.9
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.3e-104 383.6 283 74.2
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 6.6e-104 381.3 275 73.8
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.9e-103 379.8 315 65.1
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.5e-103 379.4 284 70.8
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.3e-103 379.0 299 67.6
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 4.3e-103 378.6 275 73.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 7.3e-103 377.9 305 66.2
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.2e-102 377.1 288 68.4
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 2.1e-102 376.3 281 70.1
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 3.6e-102 375.6 281 70.1
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 3.6e-102 375.6 262 73.7
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 8.0e-102 374.4 223 83.4
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.4e-101 373.6 278 69.4
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.8e-101 373.2 279 69.5
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 2.3e-101 372.9 270 70.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 8.9e-101 370.9 283 69.6
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 8.9e-101 370.9 293 67.2
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.2e-100 370.5 280 68.9
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 3.4e-100 369.0 284 69.4
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 2.0e-97 359.8 262 71.4
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 3.5e-97 359.0 265 70.2
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 3.5e-97 359.0 279 68.5
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 7.8e-97 357.8 279 66.7
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.0e-96 355.9 265 69.4
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.3e-95 352.4 238 75.2
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 4.3e-95 352.1 262 70.2
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 3.6e-94 349.0 223 78.0
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.4e-93 347.1 281 66.9
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 8.9e-93 344.4 279 68.5
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 2.0e-92 343.2 251 69.7
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 3.7e-91 339.0 254 68.1
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 3.7e-91 339.0 294 63.9
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 4.9e-91 338.6 263 68.4
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 5.4e-90 335.1 287 63.8
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.2e-89 334.0 239 69.5
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 4.6e-89 332.0 274 66.8
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 4.7e-86 322.0 198 82.3
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.1e-85 319.3 223 73.5
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 4.0e-85 318.9 223 72.2
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 3.2e-82 309.3 196 78.6
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 2.1e-81 306.6 197 77.2
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.1e-81 306.6 326 55.2
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 7.3e-79 298.1 282 60.6
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 9.5e-79 297.7 210 73.8
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.5e-76 290.4 292 58.9
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 5.8e-76 288.5 233 65.2
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 3.8e-75 285.8 245 63.3
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.4e-74 283.9 172 79.7
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 2.4e-74 283.1 195 71.8
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.8e-69 266.9 273 55.3
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.9e-69 265.0 176 75.6
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 2.5e-63 246.5 223 61.0
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 7.6e-60 235.0 199 63.8
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.4e-58 230.7 219 53.0
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.4e-58 230.7 233 49.4
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 4.2e-58 229.2 245 49.0
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 3.1e-53 213.0 351 43.3
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.3e-48 197.6 167 59.9
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-39 167.5 256 44.1
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.1e-38 163.7 140 67.9
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.9e-34 150.6 91 80.2
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 4.3e-31 139.4 148 59.5
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 9.7e-31 138.3 119 64.7
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 4.5e-28 129.4 148 56.1
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 7.9e-25 118.6 148 52.7
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.5e-23 114.4 73 80.8
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-23 112.5 93 59.1
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 8.2e-22 108.6 78 66.7
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.1e-21 108.2 170 39.4
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 5.3e-21 105.9 123 50.4
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-19 100.9 74 70.3
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 9.4e-18 95.1 198 40.4
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 9.4e-18 95.1 198 39.4
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 1.2e-17 94.7 59 76.3
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 6.1e-17 92.4 57 75.4
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.0e-16 91.7 51 84.3
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 6.7e-16 89.0 307 31.9
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 8.8e-16 88.6 55 76.4
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 8.8e-16 88.6 55 76.4
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.3e-14 84.7 103 49.5
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 2.8e-14 83.6 93 52.7
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 6.3e-14 82.4 234 28.6
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 3.1e-13 80.1 89 52.8
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.2e-12 78.2 50 74.0
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 7.7e-12 75.5 94 48.9
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.0e-11 75.1 59 54.2
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 3.8e-11 73.2 56 67.9
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 3.8e-11 73.2 90 55.6
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 7.5e-07 58.9 226 20.8
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.2e-06 57.4 232 22.8
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.2e-06 57.4 90 44.4
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 2.2e-06 57.4 223 24.2
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 3.7e-06 56.6 43 65.1


User provided reference genes

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