Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0020959 Lotus japonicus HOM05D003294 ORTHO05D004060 1.9e-37 161.0 75 100.0
Lj2g0020269 Lotus japonicus HOM05D003294 ORTHO05D004060 1.1e-35 155.2 75 96.0
TPR.G36208 Trifolium pratense HOM05D003294 ORTHO05D004060 1.3e-28 131.7 86 76.7
Medtr1g033130 Medicago truncatula HOM05D003294 ORTHO05D004060 4.8e-28 129.8 74 85.1
TPR.G40851 Trifolium pratense HOM05D003294 ORTHO05D004060 2.4e-27 127.5 86 73.3
arahy.Tifrunner.gnm1.ann1.NU92WK Arachis hypogaea HOM05D003294 ORTHO05D004060 4.0e-27 126.7 72 83.3
arahy.Tifrunner.gnm1.ann1.XI0QBF Arachis hypogaea HOM05D003294 ORTHO05D004060 4.0e-27 126.7 72 83.3
Medtr1g033100 Medicago truncatula HOM05D003294 ORTHO05D004060 4.0e-27 126.7 86 74.4
Lj5g0001019 Lotus japonicus HOM05D003294 ORTHO05D004060 4.9e-25 119.8 67 82.1
Phvul.007G002400 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 4.9e-25 119.8 64 89.1
Medtr1g033080 Medicago truncatula HOM05D003294 ORTHO05D004060 8.4e-25 119.0 86 72.1
Medtr1g116947 Medicago truncatula HOM05D003294 ORTHO05D004060 1.1e-24 118.6 64 87.5
TPR.G6490 Trifolium pratense HOM05D003294 ORTHO05D004060 1.9e-24 117.9 86 70.9
Psat6g050240 Pisum sativum HOM05D003294 ORTHO05D004060 5.5e-24 116.3 86 70.9
VMungo0720G0780 Vigna mungo HOM05D003294 ORTHO05D004060 5.5e-24 116.3 74 78.4
Psat0s2492g0040 Pisum sativum HOM05D003294 ORTHO05D004060 7.1e-24 115.9 64 85.9
Glyma.20G247850 Glycine max HOM05D003294 ORTHO05D004060 9.3e-24 115.5 64 85.9
Lj6g0023787 Lotus japonicus HOM05D003294 ORTHO05D004060 1.6e-23 114.8 76 73.7
Lalb_Chr02g0144471 Lupinus albus HOM05D003294 ORTHO05D004060 2.1e-23 114.4 64 84.4
Phvul.007G084600 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 3.5e-23 113.6 65 86.2
Atru.chr3.1652 Acer truncatum HOM05D003294 ORTHO05D004060 1.9e-16 91.3 72 66.7
Ca_13008_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 1.9e-16 91.3 51 82.4
Lalb_Chr21g0307691 Lupinus albus HOM05D003294 ORTHO05D004060 1.9e-16 91.3 52 80.8
VMungo1383G0624 Vigna mungo HOM05D003294 ORTHO05D004060 1.9e-16 91.3 68 70.6
Ca_13010_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 4.2e-16 90.1 51 80.4
Ca_13009_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 2.7e-15 87.4 50 82.0
ClCG07G016610 Citrullus lanatus HOM05D003294 ORTHO05D004060 3.5e-15 87.0 72 68.1
Sabra02G0176500 Salix brachista HOM05D003294 ORTHO05D004060 3.5e-15 87.0 71 63.4
CiPaw.01G105500 Carya illinoinensis HOM05D003294 ORTHO05D004060 7.9e-15 85.9 74 63.5
Rhsim09G0035700 Rhododendron simsii HOM05D003294 ORTHO05D004060 1.3e-14 85.1 74 62.2
Potri.002G231250 Populus trichocarpa HOM05D003294 ORTHO05D004060 2.3e-14 84.3 66 66.7
CsaV3_4G003720 Cucumis sativus L. HOM05D003294 ORTHO05D004060 3.9e-14 83.6 72 66.7
Phvul.008G003200 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 5.1e-14 83.2 61 72.1
Cc03_g11110 Coffea canephora HOM05D003294 ORTHO05D004060 8.7e-14 82.4 75 57.3
Potri.014G151101 Populus trichocarpa HOM05D003294 ORTHO05D004060 8.7e-14 82.4 69 65.2
MELO3C000009.2 Cucumis melo HOM05D000068 ORTHO05D000084 1.5e-13 81.6 72 65.3
Oeu006702.1 Olea europaea HOM05D003294 ORTHO05D004060 1.9e-13 81.3 67 64.2
Actinidia35892 Actinidia chinensis HOM05D003294 ORTHO05D004060 2.5e-13 80.9 67 64.2
Cfa015791 Carpinus fangiana HOM05D003294 ORTHO05D004060 2.5e-13 80.9 75 61.3
C03p28650 Brassica napus HOM05D003294 ORTHO05D004060 4.3e-13 80.1 71 62.0
BolC3t15227H Brassica oleracea HOM05D003294 ORTHO05D004060 4.3e-13 80.1 71 62.0
Duzib151G0954 Durio zibethinus HOM05D003294 ORTHO05D004060 4.3e-13 80.1 74 62.2
Duzib268G0989 Durio zibethinus HOM05D003294 ORTHO05D004060 7.4e-13 79.3 74 60.8
Sabra14G0114500 Salix brachista HOM05D003294 ORTHO05D004060 7.4e-13 79.3 67 64.2
Sabra14G0114900 Salix brachista HOM05D003294 ORTHO05D004060 7.4e-13 79.3 67 64.2
Peaxi162Scf00323g00618 Petunia axillaris HOM05D003294 ORTHO05D004060 9.7e-13 79.0 75 56.0
Sp4g25280 Schrenkiella parvula HOM05D003294 ORTHO05D004060 9.7e-13 79.0 67 62.7
SpUn0921_0020 Schrenkiella parvula HOM05D003294 ORTHO05D004060 9.7e-13 79.0 67 62.7
MBI11_g02538_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.3e-12 78.6 70 62.9
Nitab4.5_0001049g0140 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.6e-12 78.2 68 61.8
Sopen12g033500 Solanum pennellii HOM05D003294 ORTHO05D004060 1.6e-12 78.2 68 60.3
Sed0017100 Sechium edule HOM05D003294 ORTHO05D004060 2.2e-12 77.8 72 62.5
Sopen12g018920 Solanum pennellii HOM05D003294 ORTHO05D004060 2.2e-12 77.8 70 61.4
Migut.G00806 Erythranthe guttata HOM05D003294 ORTHO05D004060 2.8e-12 77.4 67 64.2
PGR142G3893 Punica granatum HOM05D003294 ORTHO05D004060 2.8e-12 77.4 69 60.9
CSS0007766 Camellia sinensis var. sinensis HOM05D003294 ORTHO05D004060 3.7e-12 77.0 67 56.7
Sopen12g033530 Solanum pennellii HOM05D003294 ORTHO05D004060 3.7e-12 77.0 67 61.2
BcaC07g40319 Brassica carinata HOM05D003294 ORTHO05D004060 4.8e-12 76.6 66 62.1
C08p34360 Brassica napus HOM05D003294 ORTHO05D004060 4.8e-12 76.6 66 62.1
BraA09t40598Z Brassica rapa HOM05D003294 ORTHO05D004060 8.2e-12 75.9 66 60.6
CAN.G484.117 Capsicum annuum HOM05D003294 ORTHO05D004060 8.2e-12 75.9 67 59.7
Actinidia35893 Actinidia chinensis HOM05D003294 ORTHO05D004060 1.1e-11 75.5 67 61.2
Nn1g09740 Nelumbo nucifera HOM05D003294 ORTHO05D004060 1.1e-11 75.5 67 61.2
BolC8t51035H Brassica oleracea HOM05D003294 ORTHO05D004060 1.4e-11 75.1 66 60.6
Psat0s3952g0120 Pisum sativum HOM05D003294 ORTHO05D004060 1.4e-11 75.1 88 53.4
Solyc12g098780.2 Solanum lycopersicum HOM05D003294 ORTHO05D004060 1.4e-11 75.1 67 59.7
PGSC0003DMG400021603 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.4e-11 75.1 67 59.7
arahy.Tifrunner.gnm1.ann1.067A10 Arachis hypogaea HOM05D003294 ORTHO05D004060 1.8e-11 74.7 52 71.2
arahy.Tifrunner.gnm1.ann1.3MFN7L Arachis hypogaea HOM05D003294 ORTHO05D004060 1.8e-11 74.7 52 71.2
Nitab4.5_0011287g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.8e-11 74.7 69 58.0
THA.LOC104802293 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 1.8e-11 74.7 67 59.7
arahy.Tifrunner.gnm1.ann1.F7AR35 Arachis hypogaea HOM05D003294 ORTHO05D004060 2.4e-11 74.3 81 55.6
arahy.Tifrunner.gnm1.ann1.U0YEJU Arachis hypogaea HOM05D003294 ORTHO05D004060 2.4e-11 74.3 81 55.6
A04p32470 Brassica napus HOM05D003294 ORTHO05D004060 2.4e-11 74.3 66 62.1
A09p51590 Brassica napus HOM05D003294 ORTHO05D004060 2.4e-11 74.3 65 60.0
C04p70160 Brassica napus HOM05D003294 ORTHO05D004060 2.4e-11 74.3 66 62.1
BolC4t22061H Brassica oleracea HOM05D003294 ORTHO05D004060 2.4e-11 74.3 66 62.1
BolC4t28519H Brassica oleracea HOM05D003294 ORTHO05D004060 2.4e-11 74.3 66 62.1
Sopen12g033510 Solanum pennellii HOM05D003294 ORTHO05D004060 2.4e-11 74.3 67 58.2
PGSC0003DMG400004676 Solanum tuberosum HOM05D003294 ORTHO05D004060 2.4e-11 74.3 67 58.2
CAN.G484.118 Capsicum annuum HOM05D003294 ORTHO05D004060 3.1e-11 73.9 67 58.2
Solyc12g150132.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 3.1e-11 73.9 67 58.2
HanXRQChr14g0437091 Helianthus annuus HOM05D003294 ORTHO05D004060 4.1e-11 73.6 67 58.2
Nitab4.5_0004568g0020 Nicotiana tabacum HOM05D003294 ORTHO05D004060 4.1e-11 73.6 75 54.7
Sopen12g033540 Solanum pennellii HOM05D003294 ORTHO05D004060 4.1e-11 73.6 67 59.7
PGSC0003DMG400004675 Solanum tuberosum HOM05D003294 ORTHO05D004060 4.1e-11 73.6 67 58.2
A03p24060 Brassica napus HOM05D003294 ORTHO05D004060 5.3e-11 73.2 66 60.6
BraA03t11617Z Brassica rapa HOM05D003294 ORTHO05D004060 5.3e-11 73.2 66 60.6
CARHR138220 Cardamine hirsuta HOM05D003294 ORTHO05D004060 5.3e-11 73.2 67 61.2
Cpa.g.sc164.2 Carica papaya HOM05D003294 ORTHO05D004060 5.3e-11 73.2 75 57.3
Aqoxy2G04082 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 6.9e-11 72.8 71 59.2
Nitab4.5_0000383g0350 Nicotiana tabacum HOM05D003294 ORTHO05D004060 6.9e-11 72.8 69 56.5
Solyc12g150131.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 6.9e-11 72.8 69 59.4
Sopen12g033520 Solanum pennellii HOM05D003294 ORTHO05D004060 6.9e-11 72.8 67 58.2
PGSC0003DMG400002364 Solanum tuberosum HOM05D003294 ORTHO05D004060 6.9e-11 72.8 67 58.2
THA.LOC104803514 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 6.9e-11 72.8 67 59.7
CAN.G710.61 Capsicum annuum HOM05D003294 ORTHO05D004060 9.0e-11 72.4 67 58.2
FvH4_4g11660 Fragaria vesca HOM05D003294 ORTHO05D004060 1.2e-10 72.0 72 58.3
FAN12G0818 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.2e-10 72.0 72 58.3
FAN12G1447 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.2e-10 72.0 72 58.3
FAN17G2242 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.2e-10 72.0 72 58.3
Carub.0555s0001 Capsella rubella HOM05D003294 ORTHO05D004060 1.5e-10 71.6 67 61.2
CAN.G484.121 Capsicum annuum HOM05D003294 ORTHO05D004060 1.5e-10 71.6 67 56.7
Peaxi162Scf00378g00826 Petunia axillaris HOM05D003294 ORTHO05D004060 1.5e-10 71.6 67 56.7
Peaxi162Scf00378g00827 Petunia axillaris HOM05D003294 ORTHO05D004060 1.5e-10 71.6 67 56.7
Peaxi162Scf00378g00828 Petunia axillaris HOM05D003294 ORTHO05D004060 1.5e-10 71.6 67 56.7
Actinidia17219 Actinidia chinensis HOM05D003294 ORTHO05D004060 2.0e-10 71.2 66 60.6
HanXRQChr14g0437071 Helianthus annuus HOM05D003294 ORTHO05D004060 2.0e-10 71.2 67 56.7
Peaxi162Scf00286g00022 Petunia axillaris HOM05D003294 ORTHO05D004060 2.0e-10 71.2 68 57.4
Peaxi162Scf00323g00616 Petunia axillaris HOM05D003294 ORTHO05D004060 2.0e-10 71.2 69 55.1
SpUn1318_0010 Schrenkiella parvula HOM05D003294 ORTHO05D004060 2.0e-10 71.2 64 60.9
Sopen09g036430 Solanum pennellii HOM05D003294 ORTHO05D004060 2.0e-10 71.2 67 58.2
Aa31LG1G24960 Aethionema arabicum HOM05D003294 ORTHO05D004060 2.6e-10 70.9 66 60.6
CARHR169650 Cardamine hirsuta HOM05D003294 ORTHO05D004060 2.6e-10 70.9 64 59.4
arahy.Tifrunner.gnm1.ann1.U55V76 Arachis hypogaea HOM05D003294 ORTHO05D004060 3.4e-10 70.5 49 71.4
MSTRG.24590 Avicennia marina HOM05D003294 ORTHO05D004060 3.4e-10 70.5 67 55.2
TWI15G0198 Tripterygium wilfordii HOM05D003294 ORTHO05D004060 4.5e-10 70.1 63 60.3
Hund31331 Selenicereus undatus HOM05D003294 ORTHO05D004060 5.9e-10 69.7 67 56.7
Hund31332 Selenicereus undatus HOM05D003294 ORTHO05D004060 5.9e-10 69.7 67 56.7
Peaxi162Scf00323g00521 Petunia axillaris HOM05D003294 ORTHO05D004060 1.0e-09 68.9 67 55.2
Sed0006652 Sechium edule HOM05D003294 ORTHO05D004060 1.0e-09 68.9 64 62.5
Nitab4.5_0000383g0230 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.3e-09 68.6 68 55.9
Thecc.04G182000 Theobroma cacao HOM05D003294 ORTHO05D004060 1.7e-09 68.2 71 57.7
BraA04t18713Z Brassica rapa HOM05D003294 ORTHO05D004060 2.2e-09 67.8 63 60.3
BraA05t19350Z Brassica rapa HOM05D003294 ORTHO05D004060 2.2e-09 67.8 63 60.3
MBI08_g20550_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.9e-09 67.4 72 55.6
Psat0s3952g0080 Pisum sativum HOM05D003294 ORTHO05D004060 2.9e-09 67.4 77 55.8
Gorai.005G018000 Gossypium raimondii HOM05D003294 ORTHO05D004060 5.0e-09 66.6 66 54.5
arahy.Tifrunner.gnm1.ann1.MNWX4W Arachis hypogaea HOM05D003294 ORTHO05D004060 6.5e-09 66.2 49 67.3
Gohir.A02G013500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 6.5e-09 66.2 66 54.5
RcHm_v2.0_Chr4g0408821 Rosa chinensis HOM05D003294 ORTHO05D004060 1.1e-08 65.5 69 56.5
TAR365G0590 Trochodendron aralioides HOM05D003294 ORTHO05D004060 1.4e-08 65.1 69 56.5
FAN07G0287 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.9e-08 64.7 68 57.4
Gohir.D02G014550 Gossypium hirsutum HOM05D003294 ORTHO05D004060 2.5e-08 64.3 66 53.0
Lj6A66G18 Lonicera japonica HOM05D003294 ORTHO05D004060 2.5e-08 64.3 74 52.7
Lju521A1G13 Lonicera japonica HOM05D003294 ORTHO05D004060 2.5e-08 64.3 74 52.7
SGA_v2.0_scaffold406G51043 Striga asiatica HOM05D003294 ORTHO05D004060 2.5e-08 64.3 71 57.7
arahy.Tifrunner.gnm1.ann1.AM9QWL Arachis hypogaea HOM05D003294 ORTHO05D004060 3.2e-08 63.9 64 56.2
Gohir.D09G203900 Gossypium hirsutum HOM05D003294 ORTHO05D004060 3.2e-08 63.9 55 65.5
Gorai.006G227800 Gossypium raimondii HOM05D003294 ORTHO05D004060 3.2e-08 63.9 55 65.5
ECA238G3164 Erigeron canadensis HOM05D003294 ORTHO05D004060 4.2e-08 63.5 76 51.3
QL10p046489 Quercus lobata HOM05D003294 ORTHO05D004060 4.2e-08 63.5 60 60.0
Aa31LG10G13630 Aethionema arabicum HOM05D003294 ORTHO05D004060 5.5e-08 63.2 67 53.7
MBI08_g05500_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 7.2e-08 62.8 68 55.9
DCAR_023908 Daucus carota HOM05D003294 ORTHO05D004060 9.4e-08 62.4 74 51.4
MBI08_g05488_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 9.4e-08 62.4 72 52.8
Manes.11G114666 Manihot esculenta HOM05D003294 ORTHO05D004060 9.4e-08 62.4 70 54.3
Haze_00702 Corylus avellana HOM05D003294 ORTHO05D004060 1.2e-07 62.0 52 63.5
FAN22G1863 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.2e-07 62.0 66 56.1
Sc10g0006170 Simmondsia chinensis HOM05D003294 ORTHO05D004060 1.6e-07 61.6 58 58.6
Nn7g38030 Nelumbo nucifera HOM05D003294 ORTHO05D004060 4.6e-07 60.1 71 50.7
unitig_744.g24077 Utricularia gibba HOM05D003294 ORTHO05D004060 7.9e-07 59.3 69 52.2
BcaB01g03408 Brassica carinata HOM05D003294 ORTHO05D004060 1.8e-06 58.2 50 64.0
CAN.G484.120 Capsicum annuum HOM05D003294 ORTHO05D004060 6.7e-06 56.2 57 54.4
Gohir.A09G210500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 6.7e-06 56.2 55 61.8
Hund06534 Selenicereus undatus HOM05D003294 ORTHO05D004060 8.8e-06 55.8 75 42.7


User provided reference genes

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