Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 4.3e-79 298.9 250 100.0
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 7.8e-20 102.1 150 47.3
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 8.9e-16 88.6 125 51.2
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 8.3e-14 82.0 70 60.0
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 8.3e-14 82.0 148 46.6
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 1.1e-13 81.6 73 54.8
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.4e-13 81.3 73 56.2
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.4e-13 80.5 78 53.8
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.2e-13 80.1 90 46.7
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 5.4e-13 79.3 80 52.5
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 9.2e-13 78.6 74 52.7
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.6e-12 77.8 74 55.4
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 1.6e-12 77.8 138 48.6
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 1.6e-12 77.8 77 53.2
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.0e-12 77.4 110 42.7
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 2.0e-12 77.4 80 51.2
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 2.7e-12 77.0 70 51.4
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 6.0e-12 75.9 95 46.3
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.0e-11 75.1 101 43.6
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.3e-11 74.7 130 43.1
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.3e-11 74.7 80 53.8
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.3e-11 74.7 68 52.9
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.7e-11 74.3 69 55.1
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.3e-11 73.9 86 47.7
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 2.3e-11 73.9 80 52.5
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 3.9e-11 73.2 71 52.1
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.9e-11 73.2 115 43.5
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 3.9e-11 73.2 85 51.8
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 5.0e-11 72.8 82 46.3
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 5.0e-11 72.8 80 52.5
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.0e-11 72.8 101 44.6
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 6.6e-11 72.4 140 40.0
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 8.6e-11 72.0 80 48.8
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 8.6e-11 72.0 93 44.1
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 8.6e-11 72.0 93 44.1
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 1.1e-10 71.6 68 51.5
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 1.1e-10 71.6 72 52.8
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.1e-10 71.6 69 53.6
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.5e-10 71.2 72 51.4
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.5e-10 71.2 98 46.9
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.9e-10 70.9 79 49.4
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.9e-10 70.9 112 42.0
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.9e-10 70.9 68 54.4
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.5e-10 70.5 131 37.4
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 3.3e-10 70.1 138 37.7
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 3.3e-10 70.1 66 50.0
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.3e-10 69.7 76 47.4
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 4.3e-10 69.7 69 50.7
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 7.3e-10 68.9 83 49.4
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 7.3e-10 68.9 134 35.8
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 7.3e-10 68.9 134 35.8
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 7.3e-10 68.9 83 49.4
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 9.5e-10 68.6 119 41.2
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 9.5e-10 68.6 77 49.4
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-09 68.2 132 35.6
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.2e-09 68.2 83 49.4
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 1.2e-09 68.2 75 48.0
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.6e-09 67.8 119 40.3
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-09 67.8 132 35.6
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 1.6e-09 67.8 130 40.8
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.6e-09 67.8 77 44.2
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.1e-09 67.4 72 48.6
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.1e-09 67.4 73 49.3
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 2.8e-09 67.0 77 46.8
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 2.8e-09 67.0 76 48.7
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 3.6e-09 66.6 115 40.0
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 3.6e-09 66.6 83 47.0
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 4.7e-09 66.2 83 47.0
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 4.7e-09 66.2 83 47.0
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 4.7e-09 66.2 74 48.6
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 4.7e-09 66.2 109 44.0
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.7e-09 66.2 97 42.3
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 4.7e-09 66.2 109 41.3
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 6.2e-09 65.9 136 39.7
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 6.2e-09 65.9 127 40.9
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 6.2e-09 65.9 112 42.0
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 6.2e-09 65.9 110 38.2
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 8.0e-09 65.5 84 46.4
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.1e-08 65.1 152 36.2
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 1.4e-08 64.7 68 51.5
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.4e-08 64.7 72 50.0
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-08 64.7 72 50.0
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.4e-08 64.7 72 50.0
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 1.8e-08 64.3 101 39.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 2.3e-08 63.9 89 47.2
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 2.3e-08 63.9 89 47.2
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 2.3e-08 63.9 110 41.8
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 2.3e-08 63.9 110 41.8
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 3.1e-08 63.5 116 41.4
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 4.0e-08 63.2 148 35.8
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 4.0e-08 63.2 148 35.8
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 4.0e-08 63.2 148 35.8
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 5.2e-08 62.8 73 46.6
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 5.2e-08 62.8 78 47.4
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 5.2e-08 62.8 134 39.6
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 5.2e-08 62.8 99 40.4
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 6.8e-08 62.4 117 37.6
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 8.9e-08 62.0 148 35.1
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 8.9e-08 62.0 100 41.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 8.9e-08 62.0 99 47.5
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 8.9e-08 62.0 113 41.6
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.2e-07 61.6 93 40.9
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.2e-07 61.6 92 46.7
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.5e-07 61.2 148 35.1
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.5e-07 61.2 114 38.6
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.5e-07 61.2 69 46.4
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.5e-07 61.2 99 46.5
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 2.0e-07 60.8 81 40.7
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 2.6e-07 60.5 112 41.1
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 2.6e-07 60.5 95 42.1
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 5.8e-07 59.3 120 40.0
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 5.8e-07 59.3 92 38.0
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 7.5e-07 58.9 112 40.2
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 7.5e-07 58.9 116 41.4
TPR.G24450 Trifolium pratense HOM05D003853 ORTHO05D004171 7.5e-07 58.9 159 39.0
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.3e-06 58.2 122 36.1
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 1.3e-06 58.2 133 36.8
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.3e-06 58.2 98 40.8
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 1.7e-06 57.8 101 40.6
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.2e-06 57.4 116 38.8
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 2.2e-06 57.4 138 34.8
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 2.2e-06 57.4 141 38.3
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.9e-06 57.0 72 44.4
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.9e-06 57.0 81 38.3
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.9e-06 57.0 82 41.5
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.7e-06 56.6 109 40.4
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 3.7e-06 56.6 75 45.3
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 3.7e-06 56.6 117 38.5
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 3.7e-06 56.6 115 38.3
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 4.9e-06 56.2 103 39.8
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 4.9e-06 56.2 115 38.3
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 4.9e-06 56.2 133 36.1
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 4.9e-06 56.2 133 36.1
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 4.9e-06 56.2 103 38.8
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.4e-06 55.8 72 44.4
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.4e-06 55.8 118 39.8
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 6.4e-06 55.8 68 47.1
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 6.4e-06 55.8 71 45.1
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 8.3e-06 55.5 69 46.4
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.3e-06 55.5 105 41.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 8.3e-06 55.5 129 34.1


User provided reference genes

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