Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 0.0e+00 1287.7 634 100.0
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 6.6e-202 708.0 654 59.8
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.8e-192 676.0 657 56.8
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 2.7e-187 659.4 656 54.4
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 7.8e-187 657.9 653 55.6
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 1.3e-186 657.1 664 55.3
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.9e-185 653.3 659 54.5
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 5.6e-185 651.7 654 55.0
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.9e-177 626.7 656 52.9
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 7.3e-177 624.8 645 54.7
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 4.0e-175 619.0 662 52.9
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.7e-173 613.6 657 52.2
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.0e-149 534.6 639 46.3
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.7e-149 533.9 637 46.6
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.4e-146 524.2 657 45.4
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.7e-144 517.3 656 44.8
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.8e-143 513.8 641 44.6
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.8e-143 513.8 654 44.0
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 3.1e-143 513.1 644 44.4
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 5.3e-143 512.3 652 44.0
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.3e-141 507.7 639 43.8
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.9e-141 506.5 641 44.9
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.5e-141 505.4 597 47.1
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.6e-139 500.7 639 44.4
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 2.1e-139 500.4 649 44.2
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 3.6e-139 499.6 658 43.0
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 6.1e-139 498.8 631 43.3
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 7.9e-139 498.4 642 42.5
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 7.9e-139 498.4 650 42.5
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.8e-138 497.3 639 43.0
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 5.1e-138 495.7 656 42.5
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 6.7e-138 495.4 648 44.0
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 6.7e-138 495.4 640 43.4
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.0e-137 493.8 649 42.7
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 3.3e-137 493.0 636 42.3
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 3.3e-137 493.0 635 44.4
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 7.4e-137 491.9 648 41.0
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.7e-136 490.7 651 41.8
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 2.2e-136 490.3 654 40.5
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 2.8e-136 490.0 635 41.9
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.1e-135 488.0 638 42.3
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.4e-135 487.6 630 43.5
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 4.1e-135 486.1 641 42.9
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 4.1e-135 486.1 649 40.2
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 7.0e-135 485.3 647 40.0
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 7.0e-135 485.3 636 42.3
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 5.9e-134 482.3 649 41.1
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.0e-133 481.5 651 39.9
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.3e-133 481.1 645 40.2
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.7e-133 480.7 648 40.0
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.9e-133 479.9 646 42.3
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.1e-132 478.0 661 41.9
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 2.5e-132 476.9 642 40.7
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 2.5e-132 476.9 639 41.6
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 2.5e-132 476.9 642 42.4
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 3.2e-132 476.5 701 38.8
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 2.1e-131 473.8 647 39.6
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 2.7e-131 473.4 637 42.2
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.7e-131 472.6 642 41.3
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 6.1e-131 472.2 648 39.8
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.4e-129 466.1 689 39.2
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 7.4e-129 465.3 653 40.9
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.2e-128 463.8 628 43.5
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 3.7e-128 463.0 667 39.1
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.8e-127 460.7 687 40.5
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.1e-127 459.9 659 40.7
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 4.1e-127 459.5 595 40.5
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 7.7e-126 455.3 643 40.9
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 4.2e-124 449.5 614 41.2
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 7.2e-124 448.7 646 42.4
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 9.4e-124 448.4 632 39.2
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 5.2e-122 442.6 804 36.7
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 5.2e-122 442.6 647 40.3
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 4.4e-121 439.5 635 41.3
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 2.5e-116 423.7 679 40.6
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.7e-115 419.5 644 39.8
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.0e-114 416.8 639 38.5
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.2e-113 414.8 653 36.9
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 4.4e-113 412.9 646 36.7
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.4e-111 407.9 629 39.1
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 8.6e-109 398.7 638 35.7
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.5e-108 397.1 533 43.0
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.5e-108 397.1 676 36.2
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 6.1e-107 392.5 690 35.1
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.0e-106 391.7 547 39.1
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 4.3e-100 369.8 458 41.5
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 4.4e-97 359.8 597 37.0
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 4.6e-94 349.7 553 38.9
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 1.1e-92 345.1 566 34.8
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 5.2e-90 336.3 372 47.8
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 8.3e-88 328.9 402 43.5
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 5.4e-87 326.2 451 41.9
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 4.9e-80 303.1 372 44.1
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 7.1e-79 299.3 332 46.1
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 7.1e-79 299.3 590 31.5
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.3e-76 290.4 643 29.9
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 4.0e-74 283.5 255 52.2
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.6e-73 280.8 512 30.3
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 7.6e-73 279.3 634 31.9
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-60 238.4 348 35.9
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.7e-48 198.4 262 47.3
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 1.9e-39 168.3 244 37.7
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-38 164.9 285 32.6
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 3.9e-37 160.6 268 36.2
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 3.7e-35 154.1 159 47.2
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 1.9e-31 141.7 227 37.0
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-29 135.2 293 29.7
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-27 129.0 185 37.8
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-27 129.0 319 30.4
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-27 127.9 294 29.6
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.1e-26 125.9 228 34.6
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.8e-26 125.2 427 24.6
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 4.1e-26 124.0 222 33.8
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 5.3e-26 123.6 231 33.8
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 4.2e-23 114.0 88 56.8
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.1e-22 111.7 186 38.2
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-20 105.5 319 28.8
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.1e-18 97.4 321 29.0
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.1e-18 97.4 279 29.0
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 2.6e-17 94.7 168 32.1
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.5e-17 94.4 191 27.7
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 1.0e-16 92.8 129 41.9
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-16 91.3 162 37.0
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 5.0e-16 90.5 142 35.2
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 6.5e-16 90.1 298 26.5
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-15 89.4 123 38.2
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.2e-15 86.7 148 35.8
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 3.0e-13 81.3 76 48.7
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-12 79.0 154 32.5
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.0e-12 78.6 399 22.3
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.7e-11 75.5 205 29.3
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.0e-10 70.1 175 30.9
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 9.1e-10 69.7 100 46.0
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.6e-09 68.9 112 35.7
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.7e-09 68.2 84 47.6
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 3.2e-07 61.2 94 38.3
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 1.6e-06 58.9 58 53.4


User provided reference genes

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