Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0020269 Lotus japonicus HOM05D003294 ORTHO05D004060 6.0e-91 340.1 671 100.0
TPR.G36208 Trifolium pratense HOM05D003294 ORTHO05D004060 9.6e-73 279.6 168 81.0
Lj6g0023787 Lotus japonicus HOM05D003294 ORTHO05D004060 6.2e-72 276.9 157 86.0
arahy.Tifrunner.gnm1.ann1.NU92WK Arachis hypogaea HOM05D003294 ORTHO05D004060 6.9e-71 273.5 153 85.0
TPR.G40851 Trifolium pratense HOM05D003294 ORTHO05D004060 1.5e-70 272.3 167 79.0
Medtr1g033130 Medicago truncatula HOM05D003294 ORTHO05D004060 2.6e-70 271.6 155 83.2
Glyma.20G247850 Glycine max HOM05D003294 ORTHO05D004060 1.0e-69 269.6 146 87.7
Lj5g0001019 Lotus japonicus HOM05D003294 ORTHO05D004060 4.9e-69 267.3 144 87.5
Phvul.007G002400 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 2.5e-68 265.0 143 88.8
Psat6g050240 Pisum sativum HOM05D003294 ORTHO05D004060 3.2e-68 264.6 168 78.0
arahy.Tifrunner.gnm1.ann1.XI0QBF Arachis hypogaea HOM05D003294 ORTHO05D004060 9.3e-68 263.1 163 79.1
Psat0s2492g0040 Pisum sativum HOM05D003294 ORTHO05D004060 9.3e-68 263.1 145 84.8
VMungo0720G0780 Vigna mungo HOM05D003294 ORTHO05D004060 1.2e-67 262.7 156 81.4
Medtr1g116947 Medicago truncatula HOM05D003294 ORTHO05D004060 3.5e-67 261.2 145 84.8
Medtr1g033080 Medicago truncatula HOM05D003294 ORTHO05D004060 4.6e-67 260.8 167 76.6
Lalb_Chr02g0144471 Lupinus albus HOM05D003294 ORTHO05D004060 9.7e-65 253.1 143 84.6
Phvul.007G084600 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 3.1e-63 248.1 146 83.6
Ca_13010_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 3.3e-57 228.0 123 87.0
VMungo1383G0624 Vigna mungo HOM05D003294 ORTHO05D004060 1.7e-56 225.7 150 74.0
Ca_13009_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 2.8e-56 224.9 123 87.0
Psat0s3952g0120 Pisum sativum HOM05D003294 ORTHO05D004060 6.3e-56 223.8 170 69.4
Ca_13008_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 1.8e-55 222.2 123 86.2
Phvul.008G003200 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 9.4e-52 209.9 141 73.8
MELO3C000009.2 Cucumis melo HOM05D000068 ORTHO05D000084 6.1e-51 207.2 154 69.5
CsaV3_4G003720 Cucumis sativus L. HOM05D003294 ORTHO05D004060 1.4e-50 206.1 153 69.9
Sabra02G0176500 Salix brachista HOM05D003294 ORTHO05D004060 1.4e-50 206.1 152 68.4
ClCG07G016610 Citrullus lanatus HOM05D003294 ORTHO05D004060 3.9e-50 204.5 151 70.2
Potri.014G151101 Populus trichocarpa HOM05D003294 ORTHO05D004060 5.1e-50 204.1 150 70.0
Medtr1g033100 Medicago truncatula HOM05D003294 ORTHO05D004060 2.0e-49 202.2 132 77.3
arahy.Tifrunner.gnm1.ann1.F7AR35 Arachis hypogaea HOM05D003294 ORTHO05D004060 3.3e-49 201.4 161 65.2
arahy.Tifrunner.gnm1.ann1.U0YEJU Arachis hypogaea HOM05D003294 ORTHO05D004060 3.3e-49 201.4 161 65.2
Actinidia35892 Actinidia chinensis HOM05D003294 ORTHO05D004060 9.7e-49 199.9 147 68.7
Duzib268G0989 Durio zibethinus HOM05D003294 ORTHO05D004060 1.7e-48 199.1 156 64.1
Sed0017100 Sechium edule HOM05D003294 ORTHO05D004060 2.2e-48 198.7 152 67.8
BolC3t15227H Brassica oleracea HOM05D003294 ORTHO05D004060 3.7e-48 198.0 153 65.4
Potri.002G231250 Populus trichocarpa HOM05D003294 ORTHO05D004060 3.7e-48 198.0 145 69.0
Oeu006702.1 Olea europaea HOM05D003294 ORTHO05D004060 4.8e-48 197.6 147 67.3
PGR142G3893 Punica granatum HOM05D003294 ORTHO05D004060 6.3e-48 197.2 152 66.4
PGSC0003DMG400021603 Solanum tuberosum HOM05D003294 ORTHO05D004060 6.3e-48 197.2 149 66.4
MBI11_g02538_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.4e-47 196.1 151 65.6
CiPaw.01G105500 Carya illinoinensis HOM05D003294 ORTHO05D004060 2.4e-47 195.3 155 67.1
Nn1g09740 Nelumbo nucifera HOM05D003294 ORTHO05D004060 2.4e-47 195.3 150 67.3
Peaxi162Scf00286g00022 Petunia axillaris HOM05D003294 ORTHO05D004060 2.4e-47 195.3 150 64.7
Sabra14G0114500 Salix brachista HOM05D003294 ORTHO05D004060 5.3e-47 194.1 147 68.0
C03p28650 Brassica napus HOM05D003294 ORTHO05D004060 1.2e-46 193.0 148 66.2
Cc03_g11110 Coffea canephora HOM05D003294 ORTHO05D004060 1.2e-46 193.0 152 63.2
Sabra14G0114900 Salix brachista HOM05D003294 ORTHO05D004060 1.2e-46 193.0 147 68.0
Sed0006652 Sechium edule HOM05D003294 ORTHO05D004060 1.2e-46 193.0 144 69.4
Sopen09g036430 Solanum pennellii HOM05D003294 ORTHO05D004060 1.2e-46 193.0 147 66.0
TPR.G6490 Trifolium pratense HOM05D003294 ORTHO05D004060 1.5e-46 192.6 132 74.2
Cfa015791 Carpinus fangiana HOM05D003294 ORTHO05D004060 3.5e-46 191.4 155 66.5
Sp4g25280 Schrenkiella parvula HOM05D003294 ORTHO05D004060 3.5e-46 191.4 144 66.7
SpUn0921_0020 Schrenkiella parvula HOM05D003294 ORTHO05D004060 3.5e-46 191.4 144 66.7
Thecc.04G182000 Theobroma cacao HOM05D003294 ORTHO05D004060 5.9e-46 190.7 153 64.7
CSS0007766 Camellia sinensis var. sinensis HOM05D003294 ORTHO05D004060 7.7e-46 190.3 151 64.2
Cpa.g.sc164.2 Carica papaya HOM05D003294 ORTHO05D004060 7.7e-46 190.3 156 62.8
CAN.G710.61 Capsicum annuum HOM05D003294 ORTHO05D004060 1.0e-45 189.9 147 65.3
Migut.G00806 Erythranthe guttata HOM05D003294 ORTHO05D004060 1.3e-45 189.5 147 66.7
BolC4t22061H Brassica oleracea HOM05D003294 ORTHO05D004060 1.7e-45 189.1 143 67.1
Duzib151G0954 Durio zibethinus HOM05D003294 ORTHO05D004060 1.7e-45 189.1 151 66.2
Peaxi162Scf00378g00826 Petunia axillaris HOM05D003294 ORTHO05D004060 1.7e-45 189.1 147 63.3
Peaxi162Scf00378g00827 Petunia axillaris HOM05D003294 ORTHO05D004060 1.7e-45 189.1 147 63.3
Peaxi162Scf00378g00828 Petunia axillaris HOM05D003294 ORTHO05D004060 1.7e-45 189.1 147 63.3
Actinidia35893 Actinidia chinensis HOM05D003294 ORTHO05D004060 2.2e-45 188.7 144 67.4
BcaC07g40319 Brassica carinata HOM05D003294 ORTHO05D004060 3.8e-45 188.0 143 65.7
C08p34360 Brassica napus HOM05D003294 ORTHO05D004060 3.8e-45 188.0 143 65.7
Actinidia17219 Actinidia chinensis HOM05D003294 ORTHO05D004060 5.0e-45 187.6 145 66.9
A04p32470 Brassica napus HOM05D003294 ORTHO05D004060 6.5e-45 187.2 143 66.4
C04p70160 Brassica napus HOM05D003294 ORTHO05D004060 6.5e-45 187.2 143 66.4
BolC4t28519H Brassica oleracea HOM05D003294 ORTHO05D004060 6.5e-45 187.2 143 66.4
BraA09t40598Z Brassica rapa HOM05D003294 ORTHO05D004060 6.5e-45 187.2 143 65.0
Sopen12g033530 Solanum pennellii HOM05D003294 ORTHO05D004060 8.5e-45 186.8 149 63.1
BolC8t51035H Brassica oleracea HOM05D003294 ORTHO05D004060 1.1e-44 186.4 143 65.0
A03p24060 Brassica napus HOM05D003294 ORTHO05D004060 1.5e-44 186.0 143 65.7
CARHR138220 Cardamine hirsuta HOM05D003294 ORTHO05D004060 2.5e-44 185.3 144 65.3
Nitab4.5_0000383g0350 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.5e-44 185.3 150 62.7
Solyc12g098780.2 Solanum lycopersicum HOM05D003294 ORTHO05D004060 2.5e-44 185.3 147 62.6
FvH4_4g11660 Fragaria vesca HOM05D003294 ORTHO05D004060 3.2e-44 184.9 149 65.1
FAN12G0818 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.2e-44 184.9 149 65.1
FAN12G1447 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.2e-44 184.9 149 65.1
Aqoxy2G04082 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 4.2e-44 184.5 151 62.9
FAN17G2242 Fragaria x ananassa HOM05D003294 ORTHO05D004060 4.2e-44 184.5 149 65.1
THA.LOC104802293 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 7.2e-44 183.7 144 63.2
Aa31LG1G24960 Aethionema arabicum HOM05D003294 ORTHO05D004060 9.4e-44 183.3 148 63.5
PGSC0003DMG400004676 Solanum tuberosum HOM05D003294 ORTHO05D004060 9.4e-44 183.3 147 61.9
A09p51590 Brassica napus HOM05D003294 ORTHO05D004060 1.2e-43 183.0 142 64.1
Sopen12g033510 Solanum pennellii HOM05D003294 ORTHO05D004060 1.2e-43 183.0 147 61.9
Atru.chr3.1652 Acer truncatum HOM05D003294 ORTHO05D004060 2.1e-43 182.2 136 68.4
Aa31LG10G13630 Aethionema arabicum HOM05D003294 ORTHO05D004060 2.1e-43 182.2 149 62.4
Peaxi162Scf00323g00521 Petunia axillaris HOM05D003294 ORTHO05D004060 2.1e-43 182.2 147 61.2
QL10p046489 Quercus lobata HOM05D003294 ORTHO05D004060 2.1e-43 182.2 141 65.2
Rhsim09G0035700 Rhododendron simsii HOM05D003294 ORTHO05D004060 2.1e-43 182.2 154 61.0
Carub.0555s0001 Capsella rubella HOM05D003294 ORTHO05D004060 2.7e-43 181.8 144 64.6
Solyc12g150132.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 2.7e-43 181.8 149 61.1
TAR365G0590 Trochodendron aralioides HOM05D003294 ORTHO05D004060 2.7e-43 181.8 148 65.5
Sopen12g033500 Solanum pennellii HOM05D003294 ORTHO05D004060 6.1e-43 180.6 144 63.2
Sopen12g033520 Solanum pennellii HOM05D003294 ORTHO05D004060 6.1e-43 180.6 147 61.2
Sopen12g033540 Solanum pennellii HOM05D003294 ORTHO05D004060 6.1e-43 180.6 149 61.1
CAN.G484.118 Capsicum annuum HOM05D003294 ORTHO05D004060 8.0e-43 180.3 149 60.4
Manes.11G114666 Manihot esculenta HOM05D003294 ORTHO05D004060 8.0e-43 180.3 149 63.8
Nitab4.5_0011287g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 8.0e-43 180.3 146 62.3
PGSC0003DMG400004675 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.0e-42 179.9 146 62.3
THA.LOC104803514 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 1.4e-42 179.5 143 62.9
TWI15G0198 Tripterygium wilfordii HOM05D003294 ORTHO05D004060 2.3e-42 178.7 139 65.5
Nitab4.5_0000383g0230 Nicotiana tabacum HOM05D003294 ORTHO05D004060 3.0e-42 178.3 147 62.6
FAN07G0287 Fragaria x ananassa HOM05D003294 ORTHO05D004060 6.7e-42 177.2 145 64.8
DCAR_023908 Daucus carota HOM05D003294 ORTHO05D004060 8.8e-42 176.8 157 60.5
SpUn1318_0010 Schrenkiella parvula HOM05D003294 ORTHO05D004060 8.8e-42 176.8 141 63.1
CAN.G484.121 Capsicum annuum HOM05D003294 ORTHO05D004060 1.1e-41 176.4 149 59.7
Gorai.006G227800 Gossypium raimondii HOM05D003294 ORTHO05D004060 1.1e-41 176.4 135 66.7
PGSC0003DMG400002364 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.5e-41 176.0 144 61.8
Hund31331 Selenicereus undatus HOM05D003294 ORTHO05D004060 2.0e-41 175.6 148 60.8
Hund31332 Selenicereus undatus HOM05D003294 ORTHO05D004060 2.0e-41 175.6 148 60.8
CAN.G484.117 Capsicum annuum HOM05D003294 ORTHO05D004060 2.6e-41 175.3 149 59.7
Peaxi162Scf00323g00618 Petunia axillaris HOM05D003294 ORTHO05D004060 3.3e-41 174.9 155 56.8
FAN22G1863 Fragaria x ananassa HOM05D003294 ORTHO05D004060 4.4e-41 174.5 143 64.3
Psat0s3952g0080 Pisum sativum HOM05D003294 ORTHO05D004060 5.7e-41 174.1 190 53.7
Solyc12g150131.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 7.4e-41 173.7 145 62.1
Gorai.005G018000 Gossypium raimondii HOM05D003294 ORTHO05D004060 1.3e-40 172.9 145 60.7
Gohir.D09G203900 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.7e-40 172.6 144 63.9
Lalb_Chr21g0307691 Lupinus albus HOM05D003294 ORTHO05D004060 2.2e-40 172.2 98 83.7
Sopen12g018920 Solanum pennellii HOM05D003294 ORTHO05D004060 2.8e-40 171.8 155 57.4
HanXRQChr14g0437091 Helianthus annuus HOM05D003294 ORTHO05D004060 4.8e-40 171.0 151 60.3
Gohir.A09G210500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 6.3e-40 170.6 137 65.7
MBI08_g20550_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 8.2e-40 170.2 150 59.3
MSTRG.24590 Avicennia marina HOM05D003294 ORTHO05D004060 1.4e-39 169.5 150 58.0
MBI08_g05488_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 3.1e-39 168.3 153 56.9
Gohir.A02G013500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 4.1e-39 167.9 143 60.1
Gohir.D02G014550 Gossypium hirsutum HOM05D003294 ORTHO05D004060 4.1e-39 167.9 143 60.1
PSO675G6401 Papaver somniferum HOM05D003294 ORTHO05D004060 4.1e-39 167.9 150 60.7
CAN.G484.120 Capsicum annuum HOM05D003294 ORTHO05D004060 9.1e-39 166.8 139 60.4
ECA238G3164 Erigeron canadensis HOM05D003294 ORTHO05D004060 9.1e-39 166.8 160 58.1
PSO017G7143 Papaver somniferum HOM05D003294 ORTHO05D004060 9.1e-39 166.8 137 59.1
Lj6A66G18 Lonicera japonica HOM05D003294 ORTHO05D004060 1.2e-38 166.4 157 58.6
Lju521A1G13 Lonicera japonica HOM05D003294 ORTHO05D004060 1.2e-38 166.4 157 58.6
Dinv44225 Davidia involucrata HOM05D003294 ORTHO05D004060 2.0e-38 165.6 135 64.4
Lj6C64T13 Lonicera japonica HOM05D003294 ORTHO05D004060 2.0e-38 165.6 151 60.3
unitig_744.g24077 Utricularia gibba HOM05D003294 ORTHO05D004060 4.5e-38 164.5 147 59.2
BraA05t19350Z Brassica rapa HOM05D003294 ORTHO05D004060 1.7e-37 162.5 127 65.4
MBI08_g05491_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 6.5e-37 160.6 139 58.3
BraA03t11617Z Brassica rapa HOM05D003294 ORTHO05D004060 1.1e-36 159.8 128 64.1
PSO017G4822 Papaver somniferum HOM05D003294 ORTHO05D004060 3.2e-36 158.3 159 54.7
HanXRQChr03g0075661 Helianthus annuus HOM05D003294 ORTHO05D004060 1.6e-35 156.0 153 57.5
MBI08_g05500_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.6e-35 156.0 141 58.2
Lj2g0025231 Lotus japonicus HOM05D003294 ORTHO05D004060 2.7e-35 155.2 92 94.6
Lj2g0020959 Lotus japonicus HOM05D003294 ORTHO05D004060 3.6e-35 154.8 75 96.0
BraA04t18713Z Brassica rapa HOM05D003294 ORTHO05D004060 4.7e-35 154.5 125 64.0
Lsat_1_v5_gn_2_51341 Lactuca sativa HOM05D003294 ORTHO05D004060 1.8e-34 152.5 158 55.7
unitig_578.g16248 Utricularia gibba HOM05D003294 ORTHO05D004060 1.8e-34 152.5 147 57.1
Nn7g38030 Nelumbo nucifera HOM05D003294 ORTHO05D004060 2.3e-34 152.1 153 51.6
SGA_v2.0_scaffold406G51043 Striga asiatica HOM05D003294 ORTHO05D004060 2.3e-34 152.1 137 61.3
Nitab4.5_0020026g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 3.0e-34 151.8 133 58.6
Lsat_1_v5_gn_2_51461 Lactuca sativa HOM05D003294 ORTHO05D004060 5.7e-33 147.5 155 54.8
Lsat_1_v5_gn_2_51640 Lactuca sativa HOM05D003294 ORTHO05D004060 9.7e-33 146.7 155 54.8
BcaC01g05257 Brassica carinata HOM05D003294 ORTHO05D004060 1.7e-32 146.0 107 66.4
Lsat_1_v5_gn_2_50521 Lactuca sativa HOM05D003294 ORTHO05D004060 1.8e-31 142.5 155 54.2
ATR0743G132 Amborella trichopoda HOM05D003294 ORTHO05D004060 4.1e-31 141.4 134 56.0
arahy.Tifrunner.gnm1.ann1.3MFN7L Arachis hypogaea HOM05D003294 ORTHO05D004060 2.2e-29 135.6 105 66.7
arahy.Tifrunner.gnm1.ann1.067A10 Arachis hypogaea HOM05D003294 ORTHO05D004060 6.5e-29 134.0 105 66.7
SEGI_35656 Sequoiadendron giganteum HOM05D003294 ORTHO05D004060 1.1e-28 133.3 148 49.3
vmacro00571 Vaccinium macrocarpon HOM05D003294 ORTHO05D004060 1.5e-28 132.9 99 60.6
CARHR169650 Cardamine hirsuta HOM05D003294 ORTHO05D004060 2.1e-27 129.0 111 60.4
Peaxi162Scf00323g00620 Petunia axillaris HOM05D003294 ORTHO05D004060 2.1e-27 129.0 101 61.4
Dinv22670 Davidia involucrata HOM05D003294 ORTHO05D004060 4.7e-27 127.9 156 49.4
Nitab4.5_0004568g0020 Nicotiana tabacum HOM05D003294 ORTHO05D004060 6.1e-27 127.5 123 56.9
Nitab4.5_0001049g0140 Nicotiana tabacum HOM05D003294 ORTHO05D004060 8.0e-27 127.1 110 60.0
Peaxi162Scf00323g00616 Petunia axillaris HOM05D003294 ORTHO05D004060 3.0e-26 125.2 121 54.5
arahy.Tifrunner.gnm1.ann1.MNWX4W Arachis hypogaea HOM05D003294 ORTHO05D004060 6.8e-26 124.0 94 68.1
arahy.Tifrunner.gnm1.ann1.U55V76 Arachis hypogaea HOM05D003294 ORTHO05D004060 8.8e-26 123.6 94 68.1
Sc10g0006170 Simmondsia chinensis HOM05D003294 ORTHO05D004060 4.4e-25 121.3 141 51.1
arahy.Tifrunner.gnm1.ann1.AM9QWL Arachis hypogaea HOM05D003294 ORTHO05D004060 5.7e-25 120.9 114 57.9
BcaB01g03408 Brassica carinata HOM05D003294 ORTHO05D004060 6.3e-24 117.5 97 63.9
Haze_00702 Corylus avellana HOM05D003294 ORTHO05D004060 4.1e-23 114.8 100 63.0
RcHm_v2.0_Chr4g0408821 Rosa chinensis HOM05D003294 ORTHO05D004060 8.6e-21 107.1 100 58.0
HanXRQChr14g0437071 Helianthus annuus HOM05D003294 ORTHO05D004060 1.9e-20 105.9 112 54.5
Nitab4.5_0000978g0120 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.9e-20 105.9 145 45.5
Hund06534 Selenicereus undatus HOM05D003294 ORTHO05D004060 9.5e-20 103.6 122 45.9
Zm00001eb144520 Zea mays HOM05D003294 ORTHO05D004060 1.2e-19 103.2 158 42.4
Os01g0899700 Oryza sativa ssp. japonica HOM05D003294 ORTHO05D004060 1.8e-18 99.4 169 37.9
PSO478G2289 Papaver somniferum HOM05D003294 ORTHO05D004060 1.8e-18 99.4 150 43.3
Aqoxy1G02134 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 2.6e-09 68.9 87 42.5
Nitab4.5_0002908g0110 Nicotiana tabacum HOM05D003294 ORTHO05D017749 1.3e-08 66.6 39 69.2
Sabra14G0114800 Salix brachista HOM05D003294 ORTHO05D004060 6.4e-08 64.3 34 82.4
CAN.G484.124 Capsicum annuum HOM05D003294 ORTHO05D017749 8.3e-08 63.9 39 66.7


User provided reference genes

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