Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0019927 Lotus japonicus HOM05D001101 ORTHO05D000893 2.4e-23 111.3 55 100.0
Os02g0730400 Oryza sativa ssp. japonica HOM05D001101 ORTHO05D000893 6.3e-08 60.1 41 75.6
Potri.010G094200 Populus trichocarpa HOM05D001101 ORTHO05D000893 1.1e-07 59.3 41 73.2
Lalb_Chr05g0217011 Lupinus albus HOM05D001101 ORTHO05D000893 1.8e-07 58.5 41 70.7
Potri.008G147700 Populus trichocarpa HOM05D001101 ORTHO05D000893 2.4e-07 58.2 41 70.7
Sabra08G0112300 Salix brachista HOM05D001101 ORTHO05D000893 2.4e-07 58.2 41 70.7
PGR083G2325 Punica granatum HOM05D001101 ORTHO05D000893 3.1e-07 57.8 41 68.3
PGR119G1830 Punica granatum HOM05D001101 ORTHO05D000893 3.1e-07 57.8 45 66.7
SalBow2G3253 Salvia bowleyana HOM05D001101 ORTHO05D000893 3.1e-07 57.8 41 70.7
SGA_v2.0_scaffold165G38262 Striga asiatica HOM05D001101 ORTHO05D000893 3.1e-07 57.8 41 70.7
Lalb_Chr09g0326421 Lupinus albus HOM05D001101 ORTHO05D000893 4.1e-07 57.4 41 68.3
QL03p061860 Quercus lobata HOM05D001101 ORTHO05D000893 4.1e-07 57.4 41 70.7
Sabra16G0097800 Salix brachista HOM05D001101 ORTHO05D000893 4.1e-07 57.4 40 70.0
Hund05975 Selenicereus undatus HOM05D001101 ORTHO05D000893 4.1e-07 57.4 41 68.3
Lalb_Chr16g0382351 Lupinus albus HOM05D001101 ORTHO05D000893 5.3e-07 57.0 41 68.3
CARHR063400 Cardamine hirsuta HOM05D001101 ORTHO05D000893 6.9e-07 56.6 41 68.3
Medtr5g034750 Medicago truncatula HOM05D001101 ORTHO05D000893 6.9e-07 56.6 41 73.2
Sp5g25390 Schrenkiella parvula HOM05D001101 ORTHO05D000893 6.9e-07 56.6 41 68.3
BcaB03g15541 Brassica carinata HOM05D001101 ORTHO05D000893 9.0e-07 56.2 42 69.0
Cfa009111 Carpinus fangiana HOM05D001101 ORTHO05D000893 9.0e-07 56.2 41 68.3
Haze_12149 Corylus avellana HOM05D001101 ORTHO05D000893 9.0e-07 56.2 41 68.3
Gohir.A04G134900 Gossypium hirsutum HOM05D001101 ORTHO05D000893 9.0e-07 56.2 41 65.9
Gohir.D04G178100 Gossypium hirsutum HOM05D001101 ORTHO05D000893 9.0e-07 56.2 41 65.9
Gorai.012G171100 Gossypium raimondii HOM05D001101 ORTHO05D000893 9.0e-07 56.2 41 65.9
Manes.05G088000 Manihot esculenta HOM05D001101 ORTHO05D000893 9.0e-07 56.2 41 68.3
PSO832G3645 Papaver somniferum HOM05D001101 ORTHO05D000893 9.0e-07 56.2 42 69.0
TAR371G0907 Trochodendron aralioides HOM05D001101 ORTHO05D000893 9.0e-07 56.2 41 68.3
Actinidia32588 Actinidia chinensis HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 68.3
MSTRG.24001 Avicennia marina HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 68.3
EL10Ac6g13649 Beta vulgaris HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 65.9
BcaC08g45822 Brassica carinata HOM05D001101 ORTHO05D000893 1.2e-06 55.8 42 66.7
C06p36160 Brassica napus HOM05D001101 ORTHO05D000893 1.2e-06 55.8 42 66.7
BolC6t38734H Brassica oleracea HOM05D001101 ORTHO05D000893 1.2e-06 55.8 42 66.7
CiPaw.06G073800 Carya illinoinensis HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 65.9
Ciclev10031448m.g Citrus clementina HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 68.3
COL.COLO4_19521 Corchorus olitorius HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 68.3
Duzib248G0364 Durio zibethinus HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 68.3
Gohir.D05G320500 Gossypium hirsutum HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 63.4
Hma1.2p1_0697F.1_g204810 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 1.2e-06 55.8 39 71.8
Lj7C589T17 Lonicera japonica HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 63.4
Lj2g0009470 Lotus japonicus HOM05D001101 ORTHO05D000893 1.2e-06 55.8 42 73.8
Phvul.002G072500 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 68.3
Hund25336 Selenicereus undatus HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 65.9
VMungo0251G1292 Vigna mungo HOM05D001101 ORTHO05D000893 1.2e-06 55.8 41 65.9
Actinidia15030 Actinidia chinensis HOM05D001101 ORTHO05D000893 1.5e-06 55.5 41 65.9
A07p31110 Brassica napus HOM05D001101 ORTHO05D000893 1.5e-06 55.5 42 66.7
AUR62005351 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.5e-06 55.5 41 65.9
AUR62014004 Chenopodium quinoa HOM05D001101 ORTHO05D000893 1.5e-06 55.5 41 65.9
Migut.H00139 Erythranthe guttata HOM05D001101 ORTHO05D000893 1.5e-06 55.5 41 68.3
Migut.L01428 Erythranthe guttata HOM05D001101 ORTHO05D000893 1.5e-06 55.5 41 65.9
Glyma.01G032000 Glycine max HOM05D001101 ORTHO05D000893 1.5e-06 55.5 41 70.7
Glyma.02G033400 Glycine max HOM05D001101 ORTHO05D000893 1.5e-06 55.5 41 70.7
GSVIVG01020207001 Vitis vinifera HOM05D001101 ORTHO05D000893 1.5e-06 55.5 41 65.9
Aa31LG4G10650 Aethionema arabicum HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 65.9
Aqoxy3G03038 Aquilegia oxysepala HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 65.9
AL2G29580 Arabidopsis lyrata HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 65.9
AT1G70280 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 65.9
BcaC08g46472 Brassica carinata HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 68.3
C06p44110 Brassica napus HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 68.3
BolC6t39484H Brassica oleracea HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 68.3
BraA07t31238Z Brassica rapa HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 68.3
Cpa.g.sc69.6 Carica papaya HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 65.9
Cc07_g02390 Coffea canephora HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 65.9
Cc11_g14460 Coffea canephora HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 65.9
Duzib251G0525 Durio zibethinus HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 68.3
Gohir.A05G318200 Gossypium hirsutum HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 63.4
Gorai.009G343600 Gossypium raimondii HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 63.4
Oeu025436.1 Olea europaea HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 68.3
PSO063G2075 Papaver somniferum HOM05D001101 ORTHO05D000893 2.0e-06 55.1 42 66.7
Sopen02g031780 Solanum pennellii HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 65.9
PGSC0003DMG400000502 Solanum tuberosum HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 65.9
THA.LOC104822133 Tarenaya hassleriana HOM05D001101 ORTHO05D000893 2.0e-06 55.1 41 63.4
Aa31LG7G7740 Aethionema arabicum HOM05D001101 ORTHO05D000893 2.6e-06 54.7 41 65.9
CANSAT64G2323 Cannabis sativa HOM05D001101 ORTHO05D000893 2.6e-06 54.7 41 68.3
Glyma.08G288800 Glycine max HOM05D001101 ORTHO05D000893 2.6e-06 54.7 41 65.9
Glyma.18G135800 Glycine max HOM05D001101 ORTHO05D000893 2.6e-06 54.7 41 65.9
Sabra10G0066400 Salix brachista HOM05D001101 ORTHO05D000893 2.6e-06 54.7 41 65.9
Thecc.04G006900 Theobroma cacao HOM05D001101 ORTHO05D000893 2.6e-06 54.7 41 68.3
TPR.G29174 Trifolium pratense HOM05D001101 ORTHO05D000893 2.6e-06 54.7 41 70.7
TAR622G1072 Trochodendron aralioides HOM05D000380 ORTHO05D000893 2.6e-06 54.7 41 65.9
BcaB02g09681 Brassica carinata HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
Carub.0002s1696 Capsella rubella HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
Dinv24882 Davidia involucrata HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
Dinv31019 Davidia involucrata HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
Dinv31083 Davidia involucrata HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
Duzib268G0494 Durio zibethinus HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
Hma1.2p1_0160F.1_g070690 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
Medtr8g063760 Medicago truncatula HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 68.3
Nitab4.5_0008887g0010 Nicotiana tabacum HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 63.4
Oeu027460.1 Olea europaea HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
PSO017G3792 Papaver somniferum HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
Psat2g092920 Pisum sativum HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 68.3
Psat4g125040 Pisum sativum HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 68.3
Solyc02g087010.2 Solanum lycopersicum HOM05D001101 ORTHO05D000893 3.4e-06 54.3 41 65.9
CSS0026381 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 4.5e-06 53.9 41 65.9
CSS0032434 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 4.5e-06 53.9 41 65.9
Dinv35044 Davidia involucrata HOM05D001101 ORTHO05D000893 4.5e-06 53.9 41 65.9
Eucgr.B03951 Eucalyptus grandis HOM05D001101 ORTHO05D000893 4.5e-06 53.9 45 62.2
Manes.01G198700 Manihot esculenta HOM05D001101 ORTHO05D000893 4.5e-06 53.9 41 65.9
Phvul.003G053100 Phaseolus vulgaris HOM05D001101 ORTHO05D000893 4.5e-06 53.9 41 63.4
Thecc.02G246000 Theobroma cacao HOM05D001101 ORTHO05D000893 4.5e-06 53.9 41 65.9
BraA07t30746Z Brassica rapa HOM05D001101 ORTHO05D000893 5.9e-06 53.5 42 64.3
DCAR_026546 Daucus carota HOM05D001101 ORTHO05D000893 5.9e-06 53.5 41 63.4
Thhalv10018442m.g Eutrema salsugineum HOM05D001101 ORTHO05D000893 5.9e-06 53.5 41 63.4
FAN05G2631 Fragaria x ananassa HOM05D001101 ORTHO05D000893 5.9e-06 53.5 43 62.8
FAN05G4804 Fragaria x ananassa HOM05D001101 ORTHO05D000893 5.9e-06 53.5 43 62.8
Hma1.2p1_0867F.1_g230370 Hydrangea macrophylla HOM05D001101 ORTHO05D000893 5.9e-06 53.5 41 63.4
Lj6C803T14 Lonicera japonica HOM05D001101 ORTHO05D000893 5.9e-06 53.5 41 63.4
Lj4g0015491 Lotus japonicus HOM05D001101 ORTHO05D000893 5.9e-06 53.5 41 61.0
Potri.016G092200 Populus trichocarpa HOM05D001101 ORTHO05D000893 5.9e-06 53.5 41 65.9
RcHm_v2.0_Chr2g0170891 Rosa chinensis HOM05D001101 ORTHO05D000893 5.9e-06 53.5 43 62.8
PGSC0003DMG400004115 Solanum tuberosum HOM05D001101 ORTHO05D000893 5.9e-06 53.5 41 61.0
vmacro16266 Vaccinium macrocarpon HOM05D001101 ORTHO05D000893 5.9e-06 53.5 41 65.9
Zm00001eb253510 Zea mays HOM05D001101 ORTHO05D000893 5.9e-06 53.5 42 69.0
CAN.G205.8 Capsicum annuum HOM05D001101 ORTHO05D000893 7.7e-06 53.1 41 61.0
Ca_22748_v3 Cicer arietinum L. HOM05D001101 ORTHO05D000893 7.7e-06 53.1 41 65.9
Dinv33507 Davidia involucrata HOM05D001101 ORTHO05D000893 7.7e-06 53.1 41 61.0
Rhsim12G0122000 Rhododendron simsii HOM05D001101 ORTHO05D000893 7.7e-06 53.1 41 65.9
Solyc05g005760.4 Solanum lycopersicum HOM05D001101 ORTHO05D000893 7.7e-06 53.1 41 61.0
Solyc06g048720.1 Solanum lycopersicum HOM05D001101 ORTHO05D000893 7.7e-06 53.1 41 61.0
Solyc10g018290.2 Solanum lycopersicum HOM05D001101 ORTHO05D000893 7.7e-06 53.1 41 61.0
Sopen05g001760 Solanum pennellii HOM05D001101 ORTHO05D000893 7.7e-06 53.1 41 61.0
AT1G23880 Arabidopsis thaliana HOM05D001101 ORTHO05D000893 1.0e-05 52.8 41 63.4
MSTRG.7883 Avicennia marina HOM05D001101 ORTHO05D000893 1.0e-05 52.8 41 63.4
A07p36700 Brassica napus HOM05D001101 ORTHO05D000893 1.0e-05 52.8 42 64.3
CSS0021459 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 1.0e-05 52.8 40 65.0
CSS0035328 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 1.0e-05 52.8 40 67.5
CSS0045296 Camellia sinensis var. sinensis HOM05D001101 ORTHO05D000893 1.0e-05 52.8 40 67.5
CiPaw.05G147400 Carya illinoinensis HOM05D001101 ORTHO05D000893 1.0e-05 52.8 41 65.9
FvH4_4g34810 Fragaria vesca HOM05D001101 ORTHO05D000893 1.0e-05 52.8 41 61.0
FAN07G0661 Fragaria x ananassa HOM05D000380 ORTHO05D000561 1.0e-05 52.8 41 61.0
FAN12G2904 Fragaria x ananassa HOM05D001101 ORTHO05D000893 1.0e-05 52.8 41 61.0
Manes.17G123300 Manihot esculenta HOM05D001101 ORTHO05D000893 1.0e-05 52.8 41 61.0
Nn4g22832 Nelumbo nucifera HOM05D001101 ORTHO05D000893 1.0e-05 52.8 41 63.4
Psat2g105520 Pisum sativum HOM05D001101 ORTHO05D000893 1.0e-05 52.8 41 68.3
RcHm_v2.0_Chr4g0444151 Rosa chinensis HOM05D001101 ORTHO05D000893 1.0e-05 52.8 41 61.0


User provided reference genes

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