Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.1e-231 806.6 524 100.0
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 2.4e-88 330.5 484 49.4
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 4.3e-82 309.7 484 47.9
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 9.3e-77 292.0 524 42.9
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.4e-72 277.3 540 43.7
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 6.9e-72 275.8 478 48.5
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 5.0e-62 243.0 494 43.3
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.1e-56 225.3 532 45.9
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 1.3e-54 218.4 180 76.7
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 2.2e-54 217.6 175 68.6
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 2.5e-53 214.2 185 65.9
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.2e-53 213.8 169 68.0
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 3.2e-53 213.8 169 68.0
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 4.2e-53 213.4 177 64.4
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 9.4e-53 212.2 191 60.2
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.7e-52 210.7 170 70.0
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 7.4e-50 202.6 205 54.6
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 8.2e-49 199.1 177 62.1
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 8.2e-49 199.1 360 45.6
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 2.4e-48 197.6 183 60.1
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 2.4e-48 197.6 360 45.8
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 4.1e-48 196.8 184 63.0
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 5.3e-48 196.4 196 65.3
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 1.2e-47 195.3 519 34.5
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.2e-47 195.3 180 60.6
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 2.0e-47 194.5 198 63.6
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.5e-47 193.4 179 58.1
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 7.7e-47 192.6 181 60.8
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.0e-46 192.2 548 36.5
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 2.2e-46 191.0 585 34.2
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.9e-46 190.7 199 63.3
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 8.5e-46 189.1 183 67.2
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 8.5e-46 189.1 180 68.9
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.5e-45 188.3 554 35.0
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 1.9e-45 188.0 502 37.8
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 3.2e-45 187.2 182 59.9
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.2e-45 186.0 180 58.9
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 8.0e-44 182.6 186 57.0
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 8.0e-44 182.6 176 68.8
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 3.0e-43 180.6 177 56.5
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.2e-42 178.7 174 62.1
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 1.2e-42 178.7 177 55.9
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.2e-42 178.7 137 73.0
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 3.3e-42 177.2 177 57.1
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 4.4e-42 176.8 172 66.3
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 4.4e-42 176.8 174 56.3
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 5.7e-42 176.4 184 54.9
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 1.7e-41 174.9 168 60.1
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 2.2e-41 174.5 161 59.6
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 2.8e-41 174.1 179 57.5
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 3.7e-41 173.7 170 58.2
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.3e-41 172.9 263 44.5
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 8.2e-41 172.6 193 52.8
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 8.2e-41 172.6 194 61.9
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 8.2e-41 172.6 170 59.4
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 1.4e-40 171.8 209 47.8
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.1e-40 170.6 172 58.7
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 5.3e-40 169.9 204 52.5
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 7.0e-40 169.5 203 59.6
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 7.0e-40 169.5 166 66.9
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 2.0e-39 167.9 169 53.8
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 1.0e-38 165.6 203 58.1
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 1.3e-38 165.2 202 56.9
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.7e-38 164.9 170 61.2
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 1.7e-38 164.9 168 64.9
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 2.2e-38 164.5 170 60.6
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 2.9e-38 164.1 163 58.9
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.0e-38 163.3 203 56.7
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 5.0e-38 163.3 203 56.7
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 6.5e-38 162.9 201 56.2
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.9e-37 161.4 238 45.4
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 3.2e-37 160.6 180 61.1
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.2e-36 158.7 101 82.2
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.2e-36 158.7 165 53.9
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 6.1e-36 156.4 170 65.3
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 6.1e-36 156.4 179 62.0
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 1.0e-35 155.6 215 54.9
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.0e-35 155.6 169 51.5
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 5.2e-35 153.3 496 34.5
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 6.8e-35 152.9 166 53.0
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 2.0e-34 151.4 203 47.3
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 3.4e-34 150.6 203 55.2
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 2.8e-33 147.5 505 33.7
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 3.7e-33 147.1 176 59.1
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 6.3e-33 146.4 184 57.6
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 5.4e-32 143.3 124 64.5
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 7.0e-32 142.9 229 41.5
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 7.0e-32 142.9 172 50.6
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.2e-31 142.1 196 44.4
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.6e-31 141.7 158 62.0
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 2.0e-31 141.4 165 52.1
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 2.7e-31 141.0 174 58.0
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 5.9e-31 139.8 180 56.7
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 1.0e-30 139.0 166 53.6
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 1.3e-30 138.7 188 54.3
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.3e-30 137.9 501 32.9
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 3.8e-30 137.1 519 32.4
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 5.0e-30 136.7 174 57.5
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.1e-29 135.6 174 57.5
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.5e-29 135.2 167 57.5
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 3.3e-29 134.0 163 58.9
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.2e-29 133.7 518 31.7
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.1e-28 131.3 506 31.4
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 2.1e-28 131.3 185 55.1
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 2.1e-28 131.3 150 50.0
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 2.8e-28 131.0 167 55.1
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 6.1e-28 129.8 382 31.4
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.0e-27 129.0 163 48.5
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 4.0e-27 127.1 164 56.1
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.2e-26 125.6 489 32.9
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.2e-26 125.6 489 32.3
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 1.5e-26 125.2 193 48.7
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 2.6e-26 124.4 177 54.2
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 7.5e-26 122.9 176 51.1
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 9.8e-26 122.5 164 45.1
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 4.9e-25 120.2 150 48.7
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 8.3e-25 119.4 165 54.5
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 1.1e-24 119.0 189 48.1
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.4e-24 118.6 189 48.1
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.8e-24 118.2 129 61.2
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 1.8e-24 118.2 160 55.6
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 2.4e-24 117.9 532 26.5
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 7.0e-24 116.3 128 52.3
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 7.0e-24 116.3 97 62.9
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.2e-23 115.5 155 45.2
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.2e-23 115.5 86 66.3
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 3.5e-23 114.0 168 52.4
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 4.5e-23 113.6 165 53.3
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 2.3e-22 111.3 166 51.8
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 2.3e-22 111.3 166 51.8
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.1e-21 109.0 84 63.1
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 7.3e-21 106.3 174 50.0
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 7.3e-21 106.3 174 50.0
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 7.3e-21 106.3 84 60.7
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 9.5e-21 105.9 181 45.3
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.2e-20 105.5 91 57.1
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 8.0e-20 102.8 150 43.3
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 1.0e-19 102.4 72 70.8
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 6.8e-19 99.8 191 38.7
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 3.5e-15 87.4 84 57.1
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.7e-14 85.1 120 42.5
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 3.3e-13 80.9 100 47.0
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.8e-12 77.8 89 57.3
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 2.7e-07 61.2 54 63.0


User provided reference genes

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