Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 5.3e-136 487.6 242 100.0
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 7.8e-103 377.5 240 78.8
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 3.9e-102 375.2 244 76.2
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 8.6e-102 374.0 242 76.4
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 1.2e-100 370.2 214 81.8
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 8.1e-100 367.5 225 76.9
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 1.7e-97 359.8 211 81.5
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 8.3e-97 357.5 214 77.6
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.6e-95 353.2 237 72.2
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 1.1e-91 340.5 239 72.4
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.2e-90 337.0 239 72.8
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.1e-80 303.9 239 62.3
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 5.4e-80 301.6 206 68.0
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 3.5e-79 298.9 241 62.2
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 3.6e-76 288.9 224 64.3
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.2e-74 283.9 203 66.5
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 3.4e-74 282.3 204 65.2
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 9.9e-74 280.8 183 69.9
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 2.2e-73 279.6 191 66.5
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 4.9e-73 278.5 206 62.6
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 8.4e-73 277.7 229 59.4
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 1.1e-72 277.3 230 59.6
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.9e-72 276.6 195 65.6
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 7.1e-72 274.6 228 59.2
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 7.1e-72 274.6 228 58.8
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 7.1e-72 274.6 206 61.7
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 1.6e-71 273.5 204 63.2
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 4.6e-71 271.9 234 57.3
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 6.0e-71 271.6 234 59.8
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.8e-70 270.0 197 62.9
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 1.8e-70 270.0 176 67.6
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.3e-70 269.6 234 56.8
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 6.7e-70 268.1 234 56.8
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 6.7e-70 268.1 206 60.2
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.9e-69 266.5 191 63.4
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 3.3e-69 265.8 208 59.6
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 4.3e-69 265.4 241 57.3
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 7.4e-69 264.6 206 60.2
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.3e-68 263.8 217 57.1
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 1.3e-68 263.8 193 64.2
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 2.8e-68 262.7 190 62.6
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 3.7e-68 262.3 240 52.1
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 6.2e-68 261.5 190 61.1
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 6.2e-68 261.5 193 62.2
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 1.1e-67 260.8 177 67.2
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.8e-67 260.0 247 55.1
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 2.4e-67 259.6 187 63.1
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.4e-67 259.6 214 56.1
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 3.1e-67 259.2 239 56.1
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 4.0e-67 258.8 226 58.0
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 1.2e-66 257.3 226 56.2
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 2.0e-66 256.5 191 61.3
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 2.0e-66 256.5 217 58.5
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 5.8e-66 255.0 195 60.0
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.2e-65 253.1 181 63.0
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 4.9e-65 251.9 210 53.8
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 4.9e-65 251.9 177 62.7
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.4e-64 250.4 224 52.7
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 4.2e-64 248.8 167 67.1
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 5.5e-64 248.4 190 58.4
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 7.1e-64 248.1 191 59.2
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 9.3e-64 247.7 176 71.0
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 2.1e-63 246.5 190 57.9
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 7.9e-63 244.6 224 50.9
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 1.8e-62 243.4 165 63.0
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.8e-62 243.4 178 62.4
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.8e-62 243.4 168 63.7
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 1.8e-62 243.4 183 60.1
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.9e-62 242.3 170 61.2
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 3.9e-62 242.3 205 53.2
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 1.1e-61 240.7 168 61.3
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 1.9e-61 240.0 231 48.9
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.9e-61 240.0 165 61.8
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 9.6e-61 237.7 224 49.1
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 9.6e-61 237.7 224 49.1
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 4.8e-60 235.3 225 48.9
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.8e-59 233.4 179 57.5
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 2.4e-59 233.0 179 57.5
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 3.1e-59 232.6 224 48.7
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 3.1e-59 232.6 224 48.7
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 5.3e-59 231.9 167 62.3
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 9.0e-59 231.1 178 56.2
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 9.0e-59 231.1 166 59.6
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 2.0e-58 229.9 224 48.7
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 2.0e-58 229.9 157 66.9
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.0e-57 227.6 187 60.4
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 5.0e-57 225.3 189 51.9
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.5e-53 213.8 225 48.4
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.5e-53 213.8 195 54.4
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 5.7e-53 211.8 168 53.6
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 8.5e-49 198.0 198 53.0
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 3.3e-45 186.0 167 50.9
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 1.1e-40 171.0 146 56.2
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.9e-40 170.2 180 42.8
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 1.6e-39 167.2 119 68.1
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 3.9e-38 162.5 169 50.9
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 1.4e-35 154.1 131 55.7
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 9.7e-29 131.3 108 54.6
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 2.4e-27 126.7 137 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 2.0e-26 123.6 150 38.0
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.5e-24 117.5 121 54.5
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 1.2e-23 114.4 239 33.1
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 2.1e-23 113.6 92 63.0
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.2e-21 107.8 71 57.7
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 2.6e-21 106.7 139 34.5
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.3e-20 104.4 71 57.7
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 8.3e-20 101.7 230 31.3
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 5.4e-19 99.0 223 27.8
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 7.0e-19 98.6 181 30.9
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 7.0e-19 98.6 154 31.2
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.6e-18 97.4 170 30.0
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 2.7e-18 96.7 178 33.1
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 3.5e-18 96.3 63 76.2
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 7.7e-18 95.1 166 32.5
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 3.8e-17 92.8 157 29.9
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 5.0e-17 92.4 213 27.7
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.9e-16 90.5 217 30.0
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 1.6e-15 87.4 82 54.9
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 1.6e-15 87.4 163 29.4
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 2.7e-15 86.7 179 27.9
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 3.6e-15 86.3 133 32.3
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 4.7e-15 85.9 161 28.6
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 1.4e-14 84.3 165 27.9
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 2.3e-14 83.6 171 25.1
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 2.3e-14 83.6 67 53.7
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 4.0e-14 82.8 192 27.6
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 6.8e-14 82.0 171 25.1
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 8.8e-14 81.6 140 29.3
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.2e-13 81.3 140 29.3
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 1.2e-13 81.3 181 24.9
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 2.6e-13 80.1 185 26.5
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 3.4e-13 79.7 193 28.5
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 3.4e-13 79.7 161 26.7
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 4.4e-13 79.3 138 29.0
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 5.7e-13 79.0 151 28.5
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 7.5e-13 78.6 185 27.0
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 7.5e-13 78.6 167 26.9
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.7e-12 77.4 161 26.7
Hund05263 Selenicereus undatus HOM05D008077 ORTHO05D010221 8.3e-12 75.1 178 26.4
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 3.1e-11 73.2 156 28.8
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 5.4e-11 72.4 153 28.1
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 7.0e-11 72.0 174 25.3
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 9.2e-11 71.6 165 28.5
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.2e-10 71.2 108 29.6
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.0e-10 70.5 106 42.5
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 2.0e-10 70.5 133 27.1
arahy.Tifrunner.gnm1.ann1.PWM57A Arachis hypogaea HOM05D008077 ORTHO05D010221 2.7e-10 70.1 172 24.4
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 2.7e-10 70.1 169 25.4
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 2.7e-10 70.1 109 27.5
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 2.7e-10 70.1 133 27.1
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 3.5e-10 69.7 195 25.6
Cc10_g07800 Coffea canephora HOM05D008077 ORTHO05D010221 5.9e-10 68.9 128 28.1
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.7e-09 67.4 178 25.3
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 3.3e-08 63.2 35 65.7
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 3.3e-08 63.2 154 25.3
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 4.3e-08 62.8 154 25.3
Sabra05G0118800 Salix brachista HOM05D008077 ORTHO05D010221 4.7e-07 59.3 147 25.9
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 6.1e-07 58.9 215 22.3
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 5.2e-06 55.8 168 28.0


User provided reference genes

Program Settings