Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 2.1e-143 512.3 252 100.0
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.6e-127 459.5 252 86.5
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.5e-125 453.0 252 85.3
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 4.4e-125 451.4 252 84.5
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 2.3e-121 439.1 252 84.1
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.3e-120 435.3 252 82.9
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 3.6e-119 431.8 252 82.5
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.4e-118 429.9 247 83.8
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 5.8e-117 424.5 252 80.6
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.0e-113 413.7 252 79.8
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.8e-109 397.9 252 75.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.2e-108 396.0 252 75.4
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.2e-108 396.0 252 76.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 2.9e-108 395.6 252 76.2
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.9e-108 395.6 252 76.2
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 7.1e-107 391.0 252 74.2
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 6.6e-105 384.4 252 74.2
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.1e-104 383.6 250 72.8
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.1e-104 383.6 250 72.0
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.5e-104 383.3 252 73.8
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.9e-104 382.9 252 74.2
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 2.5e-104 382.5 253 76.3
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 2.5e-104 382.5 252 73.8
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 3.3e-104 382.1 250 73.6
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 5.6e-104 381.3 252 73.8
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 7.3e-104 380.9 252 73.0
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.3e-103 380.2 253 74.3
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.6e-103 379.8 252 74.2
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.8e-103 379.0 252 71.8
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.8e-103 379.0 252 72.6
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 6.2e-103 377.9 252 74.2
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 6.2e-103 377.9 252 74.6
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 6.2e-103 377.9 253 73.1
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 8.1e-103 377.5 251 73.3
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.4e-102 376.7 252 73.0
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.8e-102 376.3 252 74.6
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 2.4e-102 375.9 252 73.4
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 4.0e-102 375.2 252 71.4
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.2e-101 373.6 252 74.6
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.6e-101 372.5 252 70.6
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 2.6e-101 372.5 252 73.4
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 3.4e-101 372.1 252 71.8
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 3.4e-101 372.1 252 69.8
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.4e-101 372.1 252 72.2
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 5.8e-101 371.3 251 72.5
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 7.6e-101 370.9 251 69.7
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 7.6e-101 370.9 252 69.8
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.3e-100 370.2 252 69.4
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 2.9e-100 369.0 252 69.0
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 3.8e-100 368.6 252 69.8
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 3.8e-100 368.6 250 70.0
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 3.8e-100 368.6 252 69.4
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 4.9e-100 368.2 253 70.8
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.1e-99 367.1 253 70.4
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.4e-99 366.7 252 70.6
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.4e-99 366.7 252 69.4
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 2.4e-99 365.9 241 71.8
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.4e-99 365.9 252 69.8
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.2e-99 365.2 253 68.8
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 5.4e-99 364.8 252 69.8
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.4e-99 364.8 248 73.0
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.4e-99 364.8 248 73.0
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 9.3e-99 364.0 243 74.9
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.2e-98 363.6 260 68.5
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.2e-98 363.6 252 72.2
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.2e-98 363.6 243 74.9
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.6e-98 363.2 252 72.2
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.6e-98 363.2 250 69.2
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.7e-98 362.5 248 72.6
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 4.6e-98 361.7 252 69.4
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.0e-97 360.5 252 71.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.8e-97 359.8 252 68.7
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 1.8e-97 359.8 255 68.6
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 2.3e-97 359.4 252 71.4
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.3e-97 359.4 252 71.4
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.9e-97 358.6 252 70.2
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 5.1e-97 358.2 252 68.7
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 5.1e-97 358.2 252 69.0
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.7e-97 357.8 254 68.1
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.1e-96 357.1 252 67.9
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.5e-96 356.7 252 67.5
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.9e-96 356.3 253 71.1
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 2.5e-96 355.9 252 68.7
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 2.5e-96 355.9 252 68.7
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.3e-96 355.5 250 68.4
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 4.3e-96 355.1 252 67.9
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 4.3e-96 355.1 252 68.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 4.3e-96 355.1 255 67.1
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 5.6e-96 354.8 252 68.3
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.3e-95 353.6 252 67.9
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.6e-95 353.2 253 67.6
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.6e-95 353.2 252 67.1
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.1e-95 352.8 252 67.1
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 4.8e-95 351.7 256 68.4
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 6.2e-95 351.3 252 67.1
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.1e-95 350.9 255 66.3
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.1e-94 350.5 252 67.9
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-94 350.1 252 65.5
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 3.1e-94 349.0 252 69.0
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 4.0e-94 348.6 252 66.7
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 6.9e-94 347.8 274 63.9
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 6.9e-94 347.8 274 63.9
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 1.2e-93 347.1 251 67.7
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 3.4e-93 345.5 253 68.0
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 9.9e-93 344.0 245 68.6
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 9.9e-93 344.0 245 68.6
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 3.8e-92 342.0 256 68.0
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 4.9e-92 341.7 245 68.2
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.4e-92 340.9 252 65.1
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.5e-91 339.3 252 65.9
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.2e-90 337.0 252 63.9
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 2.1e-90 336.3 255 65.9
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.7e-90 335.9 252 63.9
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.8e-89 333.2 227 71.8
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.9e-89 332.0 291 59.1
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.1e-88 330.5 294 58.5
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 6.2e-87 324.7 253 63.6
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 6.9e-86 321.2 241 63.1
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.1e-83 313.9 252 62.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.9e-83 313.2 186 80.1
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 2.5e-83 312.8 259 58.3
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 3.2e-83 312.4 203 73.9
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 5.5e-83 311.6 242 63.6
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.3e-81 307.0 252 60.3
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 6.7e-81 304.7 249 60.6
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 7.4e-80 301.2 186 76.9
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.6e-77 292.7 244 62.3
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 5.9e-77 291.6 175 77.7
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.3e-76 290.4 253 58.5
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 6.5e-76 288.1 153 89.5
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 4.3e-72 275.4 252 57.1
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.0e-64 250.0 151 78.8
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.3e-64 249.2 147 80.3
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 2.8e-63 246.1 188 66.0
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 6.3e-63 245.0 182 69.8
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 5.9e-61 238.4 253 47.8
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.9e-52 209.5 176 55.7
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 3.2e-51 206.1 175 59.4
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 5.2e-49 198.7 195 55.9
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-45 187.6 193 53.9
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.2e-45 187.6 193 53.9
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 2.1e-42 176.8 110 75.5
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 6.8e-41 171.8 167 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 3.1e-38 162.9 134 59.0
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.8e-34 149.8 88 76.1
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 9.5e-27 124.8 73 80.8
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.2e-26 124.4 73 79.5
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.4e-25 120.9 174 36.8
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 8.9e-25 118.2 63 82.5
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.4e-22 110.2 168 35.1
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 5.4e-22 109.0 75 73.3
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-20 104.8 99 53.5
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-20 104.8 99 53.5
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 2.3e-20 103.6 108 53.7
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 1.3e-12 77.8 94 47.9
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 3.0e-12 76.6 83 51.8
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 5.1e-12 75.9 52 67.3
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.9e-11 73.9 41 90.2
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.8e-09 67.4 182 29.7
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 2.3e-09 67.0 54 66.7
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 3.1e-09 66.6 47 59.6
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 4.4e-08 62.8 52 61.5
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 9.9e-08 61.6 167 31.1
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.3e-07 61.2 218 25.7


User provided reference genes

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