Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 1.3e-106 390.2 271 100.0
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 9.5e-49 198.0 273 70.7
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 8.6e-42 174.9 184 58.2
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 1.1e-41 174.5 187 55.6
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 5.6e-41 172.2 188 53.2
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 4.7e-40 169.1 188 54.8
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 4.7e-40 169.1 188 54.8
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 8.9e-39 164.9 189 54.5
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 2.0e-38 163.7 269 65.8
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 2.0e-38 163.7 188 52.7
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 1.3e-34 151.0 185 50.8
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 3.9e-34 149.4 190 54.2
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 2.1e-32 143.7 221 48.4
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 5.2e-31 139.0 200 47.5
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 3.4e-30 136.3 200 46.0
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.3e-29 134.4 216 47.2
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 7.1e-28 128.6 205 44.9
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 6.0e-27 125.6 198 48.5
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 7.8e-27 125.2 202 46.5
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 3.9e-26 122.9 188 44.1
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 9.5e-25 118.2 183 46.4
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 1.6e-24 117.5 197 42.6
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 3.6e-24 116.3 200 46.0
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 8.1e-24 115.2 188 43.1
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 1.4e-23 114.4 201 44.8
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 4.0e-23 112.8 212 39.2
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 6.8e-23 112.1 186 43.0
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.2e-22 111.3 187 44.4
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.2e-22 111.3 195 41.0
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 1.2e-22 111.3 195 41.5
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.5e-22 110.9 195 41.0
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.6e-22 110.2 195 41.0
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 3.4e-22 109.8 183 42.1
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 5.8e-22 109.0 195 40.5
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 5.8e-22 109.0 186 42.5
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 7.6e-22 108.6 222 40.5
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 9.9e-22 108.2 208 37.5
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 9.9e-22 108.2 219 40.6
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 9.9e-22 108.2 187 41.2
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.3e-21 107.8 205 38.5
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.7e-21 107.5 207 41.1
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 3.8e-21 106.3 209 41.1
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.1e-20 104.8 192 42.7
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.1e-20 104.8 192 40.1
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.4e-20 103.6 207 41.5
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 5.4e-20 102.4 198 42.4
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 2.7e-19 100.1 205 37.6
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 3.5e-19 99.8 195 37.4
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 7.8e-19 98.6 216 36.6
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 1.0e-18 98.2 196 36.7
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 1.3e-18 97.8 199 39.2
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 1.7e-18 97.4 214 36.9
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.7e-18 97.4 223 39.0
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 2.3e-18 97.1 200 39.5
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 5.1e-18 95.9 223 39.5
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 8.7e-18 95.1 215 38.1
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 1.1e-17 94.7 193 39.4
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 1.1e-17 94.7 223 39.5
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.9e-17 94.0 196 38.8
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.9e-17 94.0 196 37.8
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.3e-17 93.2 203 42.9
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 4.3e-17 92.8 222 37.4
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 9.6e-17 91.7 184 39.1
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.2e-16 91.3 214 38.8
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 2.8e-16 90.1 201 36.8
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.8e-16 90.1 184 38.6
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 4.7e-16 89.4 198 41.4
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.4e-15 87.8 212 35.8
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.8e-15 87.4 183 39.3
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.1e-15 86.7 184 37.5
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 6.9e-15 85.5 213 37.1
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.2e-14 84.7 184 37.5
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.5e-14 84.3 213 36.2
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 4.4e-14 82.8 184 37.5
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 2.9e-13 80.1 196 33.7
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 3.8e-13 79.7 183 35.5
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 3.8e-13 79.7 185 36.8
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.9e-13 79.3 210 35.2
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 8.4e-13 78.6 202 33.7
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 8.4e-13 78.6 74 58.1
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 1.1e-12 78.2 185 35.7
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.4e-12 77.8 185 35.7
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 2.4e-12 77.0 194 33.5
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 3.2e-12 76.6 203 34.0
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 3.2e-12 76.6 198 36.4
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 7.1e-12 75.5 183 35.0
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 7.1e-12 75.5 143 39.9
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.2e-11 74.7 209 33.0
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 2.1e-11 73.9 180 36.7
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 3.5e-11 73.2 192 33.3
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 4.6e-11 72.8 209 31.1
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 7.8e-11 72.0 184 34.8
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 7.8e-11 72.0 186 32.8
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.3e-10 71.2 209 34.4
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 1.3e-10 71.2 151 39.1
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 2.3e-10 70.5 193 35.2
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 2.3e-10 70.5 206 31.6
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 6.6e-10 68.9 190 32.6
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 1.5e-09 67.8 182 34.1
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 1.9e-09 67.4 202 34.2
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 4.3e-09 66.2 183 30.6
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 5.6e-09 65.9 212 33.5
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 7.3e-09 65.5 196 31.6
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 7.3e-09 65.5 183 32.2
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 9.6e-09 65.1 216 29.6
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 1.6e-08 64.3 186 31.2
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 1.6e-08 64.3 184 31.5
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 1.6e-08 64.3 196 34.2
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 1.6e-08 64.3 203 33.5
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 2.8e-08 63.5 182 29.1
unitig_699.g19788 Utricularia gibba HOM05D006310 ORTHO05D007768 3.6e-08 63.2 42 64.3
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 6.2e-08 62.4 123 35.0
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 8.1e-08 62.0 180 31.1
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 8.1e-08 62.0 216 29.2
Gorai.013G234200 Gossypium raimondii HOM05D001903 ORTHO05D001847 8.1e-08 62.0 190 28.9
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.8e-07 60.8 64 48.4
Ciclev10009202m.g Citrus clementina HOM05D001903 ORTHO05D001847 5.3e-07 59.3 186 28.5
SEGI_34370 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 5.3e-07 59.3 66 45.5
Duzib150G0453 Durio zibethinus HOM05D001903 ORTHO05D001847 9.0e-07 58.5 179 29.1
TWI63G1536 Tripterygium wilfordii HOM05D001903 ORTHO05D001847 9.0e-07 58.5 188 30.3
ClCG05G016900 Citrullus lanatus HOM05D001903 ORTHO05D001847 1.5e-06 57.8 163 30.1
Gohir.A13G199800 Gossypium hirsutum HOM05D001903 ORTHO05D001847 2.0e-06 57.4 196 28.1
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 2.6e-06 57.0 56 51.8
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 2.6e-06 57.0 117 28.2
Gohir.A07G028000 Gossypium hirsutum HOM05D001903 ORTHO05D001847 3.4e-06 56.6 179 30.7
arahy.Tifrunner.gnm1.ann1.C6FBGW Arachis hypogaea HOM05D001903 ORTHO05D001847 4.5e-06 56.2 177 29.4
arahy.Tifrunner.gnm1.ann1.T4Y60T Arachis hypogaea HOM05D001903 ORTHO05D001847 4.5e-06 56.2 177 29.4
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 4.5e-06 56.2 57 47.4
Zm00001eb024820 Zea mays HOM05D006310 ORTHO05D007768 4.5e-06 56.2 173 30.6
Gohir.D13G205300 Gossypium hirsutum HOM05D001903 ORTHO05D001847 7.6e-06 55.5 198 27.8
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 7.6e-06 55.5 77 44.2
COL.COLO4_35107 Corchorus olitorius HOM05D001903 ORTHO05D001847 9.9e-06 55.1 203 27.1
Glyma.13G365300 Glycine max HOM05D001903 ORTHO05D001847 9.9e-06 55.1 73 45.2
Manes.06G057500 Manihot esculenta HOM05D001903 ORTHO05D001847 9.9e-06 55.1 109 34.9


User provided reference genes

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